Array 1 163412-161064 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNE01000015.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2015017 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163411 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163350 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163289 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163228 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163167 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163106 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 163045 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 162984 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 162923 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 162862 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162801 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162740 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162679 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162618 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162557 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162496 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162435 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162374 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162313 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162252 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 162191 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 162130 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 162069 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 162008 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161947 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161886 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161825 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161764 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161703 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161642 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161581 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161520 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161459 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161398 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161337 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161276 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 161215 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161154 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 161093 29 93.1 0 A...........T................ | A [161066] ========== ====== ====== ====== ============================= ================================ ================== 39 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181779-179919 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNE01000015.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2015017 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181778 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181717 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181656 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181595 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181534 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181473 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181412 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181351 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 181290 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 181229 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 181168 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 181107 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 181046 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 180985 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180924 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 180863 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180802 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180741 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180679 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180618 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180557 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 180496 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180435 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180373 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180312 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180251 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180190 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180129 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180068 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 180007 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 179946 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //