Array 1 1722832-1721919 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAII01000001.1 Streptomyces sp. E1N211 s-211_S3_L001_R1_001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1722831 36 91.7 38 ....A.........C....................T CTCGACGACTACCTCGAGCTCCCCGTCCGCATCAAGGC 1722757 35 94.4 37 ..............................-....G GAGGTCGCCGTGAACGTGCCGAGGCAGAACGGCAAGC 1722685 36 94.4 37 .....T........C..................... CGCACCAACGCCGCAGCGCCCCGCAGGCACAGCTCAA 1722612 36 91.7 37 ..............C..AA................. CAAGCGGCGGACCTGATCGCCGAGGGCCTCGTCGACC 1722539 36 86.1 37 ........AT....C..A...........C...... GCGGACATCCTCGTGATGTTCGCCCAGACCATCCTCT 1722466 36 83.3 38 .......TA.T..TC......G.............. AGCTCGGCCGGGGTCGCCTTGGCGAGCGCCGCCGCCGC 1722392 36 91.7 37 .............TC......G.............. GGCCCGAGCACGACCAGGGAGGCCTGGTAGGTGTTGC 1722319 36 100.0 37 .................................... CACGCGTACAGGCGGGTGACAGTGCCGCTGTCAGGGG 1722246 36 91.7 38 .........T....C....T................ AACTCCGGCTGCGCATATGCCACGATGGGGCGTCCAAG 1722172 36 94.4 37 .........T....C..................... GGCCGGGACGCGACCGCGGAGCAGCTCGCCCCGTTCC 1722099 36 100.0 37 .................................... TGGTAGTTGGTCAGCATCTGCGTGACCAGGTCGCGGC 1722026 36 97.2 36 ..............C..................... CCCGTCGGGGACGGGCCGCTCACCCAAGCTCCCGGC 1721954 36 94.4 0 ...........T...A.................... | ========== ====== ====== ====== ==================================== ====================================== ================== 13 36 93.2 37 TGGCGGTCGCCCTCTGGGGCGACCGAGGATCGCAAC # Left flank : AAGGGGCTCGCCAACCCAGACGACCTGGACACACTGCGCTCCTACTACCAGCACCGCTACCGACTCCAGGCCGGACGCTCCTCCACCGACCCCAACGGAGCCACCGGAGAAGCCATCGAAGCGCTGCGAGAAAGGCTGGACTACCCGGAAATCGCCCGCAGAATGCGCATGATCGACAACGAGCACTCCGTGGCAGTCGTCGTCATCCGTCCCCAGCTCGACCAGCACGACCGGCAGGTCGCCCAAGACGCCATCGAACAAATCCGCAGCGGGGTACCGACTCCGGAGACCTACCGCACTCTTCAAGACCACATGGCATCCATCCCACAACGTGAACTGGATACAGCGATCAACACCGGAGACGCCGCCGAAATTGCCGGTGACCTATACGAATGGACAGGCCCCTACCATCCACAACGAGGAATCGAACCCGCCCTATAGTGAAATCGGCAGCGGTAGAAGATCCTCCGATCGATACAGTGTTCTGGGATAAAGCATCG # Right flank : ATCGCCCACAGGGCGTCAGCGCCCTCGCCCGCCATCTGGCGGTCGCCCACTGGCTCTAGCACCTGATCAGGCCGCCGTGAGCCCTGAAAAAACGCTGCTGTTGTGGCGGTTGGCCTGCGACCATCAGGCACGGGTTCAAACAGGTGAGGAACGATGGCCAACTTTCGATTCGGCTCGAACGATTACACCGTCAACCTTCGAGCGCAGCAGCACGCCGACCTCTTCCAGGGCTGGGACGCCCACCGACTCGCCTTGACCTTCGAGGTGACCGCCCACGGCGACTACACCGAGGACACCCCGTTCCTCGTCTCCGGCCGTCTCTGGACACACGAGATGCCCAGCCCTGCGAGCTGGATCGGCGTCCTGCACTCCGTATCGGGGCCGATCGGGCTGAAGTCGTTCCCGACGATGCTCGCGCTTGAGGCAACCGTGACAGACCAACAGCTGTGCGGCCTGGAGAAGATGCGGGCGGGCGCCGCCTTGTCCATGCGCGCCGAACT # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGCGGTCGCCCTCTGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.40,-13.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [5-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1728968-1729803 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAII01000001.1 Streptomyces sp. E1N211 s-211_S3_L001_R1_001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1728968 36 75.7 35 G.A..A......G.-G.G...A..T............ AATCTTGATCCCAAGCAGGTCACCATTGCAGCCTT 1729039 36 78.4 35 A.AA....A....-.TCG................... ACCGCCAACGGAGCAGCCAACCTCATCAAGGTGAG 1729110 36 89.2 35 ................-G..TA............... ATGGTGATGCAGGGAACTGGCGGAAATGACGGTCT 1729181 37 83.8 37 T.A.............TG......T...A........ GAGTCGGACGAGATGCAGGCGACCATCGAGCGCGTCA 1729255 36 89.2 36 .......G.......TG......-............. GCCGAATACGCCGAGGCCCGCCAGTCCGGCTACCTG 1729327 37 97.3 37 ...................A................. ACCCACACCGGCCCCGTGGCCATGATGATCCCGGCCA 1729401 37 94.6 37 ................GG................... CTGTCTCCCGGGCATCCGCGGACAGCCGTCAACGAGC 1729475 37 100.0 37 ..................................... CTCGTGTCCAGAGTACGGAGCGATGCGCAGGCATCGC 1729549 37 100.0 35 ..................................... GTGGCGATCGCCACCCCTACGAACGTCGGCGCTCC 1729621 37 97.3 37 .........................A........... TCCGGAGTCTGATTTTTGAGCACCACCACGATCTCGA 1729695 37 86.5 35 ..........T..C..G.......T.......A.... GCGAACCCGCGCAGCGAGCCGAGGCTGGCGGCTAA 1729767 37 78.4 0 .........A....GTGGT..........G.....C. | ========== ====== ====== ====== ===================================== ===================================== ================== 12 37 89.2 36 CTGGCGGTCGCCCTCCAAGGCGACCGAGGATCGCAAC # Left flank : CCGCTCCATCGACCCCATCACCCCTCTCGAGGCCGGCATCACCCGCGTCGCCCCGAACAAGCCCGAAGACCTCGCCAAGGGCAAGGTCACCGAGATGGGCAACAAGCACTACGTTCCCTACGGCCTCTACCGCGGCCACGGCTTCTACTCCGGCGCCCTCGGCGCCAAGGCCGGCGTCACCCCGGACGACCTGGCCGCCTACTGGCACGCCATGACCATGATGTTCGACCACGACCGCGCCGCCTCCCGCGGCGAAATGGCCATCCGCGGCCTCTACGTCTTCACCCACGACGACGCCTACGGACAAGCCCCCGCCCACAAACTCCTCGACCTCATCCGCATCAAGCCACTGGGCCACAGCGAAGCACGATCCTGGGACGACTACACCGACCGCATCACCACCGACGAAGACCACATCCCCAACGGAGTCACCCTCACCCGCCTCATCCACTGAACCGACCCAAGAGCACGGAACGCGGCTCAGGGCTGCGCACCGTCTC # Right flank : CGACCTGGGCGATGTTGCTGTACGTGCTCAACTGAGGCAACGGAACAGGCCGCGGCAGGGCCGGACCCGCTCCTGGCCGTGGTCCTCTTCCGGCTGCGGCAGCGCCGCTGCCTGGAGGGGCGGCTGTCTCTCTGTGCGTGTCCTCCAGAGGTCCTACCAGGAACCGAGCGGGTGTAGAGCTGGCGCATGTCGAGGTGGCACCGCAGCTCTCCGGCTGGTCGGCATCCCGACTGGTGCGCTCCGTGGACGTCGTCGCTCACCGTGCGGCCAGGGCCGCATCGTCAGCTACGCAGCGGGTTCATACGTCACGCTCTGGTCCGGGCAGCCGGCCGCCGTCTCGTGCAGGGCCGCTACTTCGGCCTCGTCGGCCGCGAGGCTCCAGCGGAGTTTCGTGCCGACCCACTCCGCGGCATACCGGCAGTGCGCCTCGGTGGCCGGCGGCAGCCACTCGGCAGGATCCTGGTCGGCCTTGGAGCGGTTGGAGCGGGCGGTGACCGCGA # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGCGGTCGCCCTCCAAGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.00,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [27-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //