Array 1 31-194 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUQ01000022.1 Thermococcus sp. CX2 NODE_23_length_224_cov_13.608247, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 31 30 100.0 37 .............................. CTGTGTTTCCTCGACCCGGAGGCTCGGAAGCTTCCGT 98 30 100.0 37 .............................. TCTGGGGCGGCCTTAAGGAGGGCTTCGCCGAGCTGGA 165 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 100.0 38 GTTTCAATAAGACTCTAGGAGAATTGAAAG # Left flank : TCGTATCGTTTAGCATCTTCTAAAGCTTCTG # Right flank : AATAATCAAAACTCCAGGCGTGATTAGATT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 35894-34023 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUQ01000001.1 Thermococcus sp. CX2 NODE_1_length_741660_cov_37.093017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================ ================== 35893 30 100.0 38 .............................. TTAGCGAGTTCTTCGGAGAGTTTGGATCAGGGAAGACT 35825 30 100.0 37 .............................. CTAAGTAGGCTGCTTCCCTAAGAACTCTCAAACCCCA 35758 30 100.0 35 .............................. TCATTTAGACCCCCCCCAATCTCATTAATGAGAGT 35693 30 100.0 38 .............................. CTCTTTTTTGGGCTTCGAGAATCTTACGGTTCTTTTCG 35625 30 100.0 38 .............................. TGATGAGATAGAAGAGGAGCTTAGAAGGGAAGCGATAC 35557 30 100.0 37 .............................. CATACCGGGCTTACTTGTGGCATTTGCTATTTATCAG 35490 30 100.0 37 .............................. TTGGGAAAGGAAAGGAAAAAGACAGGCGGGGGAGTGG 35423 30 100.0 37 .............................. CGTAGTCCTCCTGGTTGAAAAGCCTGCGGAACTTGGG 35356 30 100.0 38 .............................. AATAGAGCTTGAAAGTTGCCAATAGTCCGTAATTTGTC 35288 30 100.0 36 .............................. GACGTTAACGTAGAAGTCGGTGGTGCTTGCATCAAC 35222 30 100.0 38 .............................. GCTGTTATTGCCACTCGGCTTGTCCTCTTCTTTCGGGA 35154 30 100.0 38 .............................. AACTAGTGGCCTCCCATCTGTTTACGGAGGGAAAGCTC 35086 30 100.0 36 .............................. TCTTTCGTGGTCGTCGGTCTTCTCTTCGAGGGTCTT 35020 30 100.0 36 .............................. CAGTACAGGTACAGGCTCTACGTTGACGGTCAAGAG 34954 30 100.0 38 .............................. TGATGGGCAGGCCATTCTTCTTCTGAAGCCTGACGCGC 34886 30 100.0 36 .............................. TCCTCCCTGGCCAGAAGGTCCCCATTGCTATCGTAG 34820 30 100.0 37 .............................. ATATACAAGAGGTATGAGCAGATGAAAGACCAGTTCA 34753 30 100.0 37 .............................. TCAACCACGGCCATCACGCTCCTCAACCTCTCCCCAG 34686 30 100.0 37 .............................. AGCGTTCTCGTATCGTTTAGCATCTTCTAAAGCTTCT 34619 30 100.0 37 .............................. CTGTGTTTCCTCGACCCGGAGGCTCGGAAGCTTCCGT 34552 30 100.0 39 .............................. AAGGAGATAGACCTTACTAAGATACGCCTGAGCGTCCAG 34483 30 100.0 37 .............................. TCTGGGGCGGCCTTAAGGAGGGCTTCGCCGAGCTGGA 34416 30 100.0 39 .............................. AATAATCAAAACTCCAGGCGTGATTAGATTCAGGTTTGA 34347 30 100.0 38 .............................. ACGACCTCAAAAACTACCCTGTGCCAGTGGACCTGGAC 34279 30 100.0 37 .............................. ACGTCTTTAGAATGTTCTCCGCCACTTGCCTTGTGAG 34212 30 100.0 60 .............................. TTATCGCTATCTGTTTAGCTATGGTGTGTTTGAGGAGGTTTCAATGCGGCGCCTCGTTTT 34122 30 100.0 40 .............................. AGGACGAAGACAGCGCCTATGACGATAGCGCCTACCTGTA 34052 30 70.0 0 ...............C......CCCCGCGC | ========== ====== ====== ====== ============================== ============================================================ ================== 28 30 98.9 38 GTTTCAATAAGACTCTAGGAGAATTGAAAG # Left flank : GGGACTTATAACCCTTGCCCGAAGAGATTTCGGAGCAGATTCATACTGCGGCATCCCCGGCCTTCTCACTTCAACGTCCAGAACTCTGGAAAATGGGGGCGGTGAAGTGTTTGGAAGTCTTTAGTAACACCCGGTAATTATCGGACTTTTTGTTACGATCTTTGCCTTAGGATGTAACGAAATTTTTTCAGAGCGTTGAGAAGAGCACGGTACGGCCGTTTTCATCCCATTTTCCAGAGGAAACCGTTCTTTTTGGCTGTTAAATGATTTTGAAGTCCGAAAATTAATTTTTCTCTTTTCTCCGGGCTTTGGAAGTCTCACGAACATTCTTGTTCACAGGATTTTTTGAGCTGTACAGGCCCTGAAATTCCTGAGAGAGGTTCCTGAAAGGCCCCGAATAGAGGATCCTCGTAGCGTTGAAATCACCCCTCCGCAGAAAAACTTATAAGATTCAAGGCACTTTATAGCCCTATAGAGCAAAAGAAGGAAAAAGCCGCCCT # Right flank : CCTTAAAATATACCGAGGGGAGGCAGAGGGCCTCACCCAACGGTGAATATCCGTATCGTGTTCGTTCCAGCGGTCTTCCCTATCGGCGTTCCCTTCGTCAGCAGAACCGTGTCGTTTTCGTTCACGAGGCCAAGGCCCTTGATGAGGTTCAGTATCTCGCGCTCGCTGGTCTCCTCGACGAGGAACGGGTAGACTCCATAGGAGAACATGAGGCTGTTGGCAACCTTCTCGTCGGTGGCGAAAGCCAGAATCCACTGCCTCGGCTTGAAACGGGATATCAGCCTGGCCGTCTCACCGGTCCTCGTGGGGGTAAGGATGTACTTGATGTCTATCGAGTTGAGGGCCTCTATGATGCTCCTCGCTATGGCGTCTTTTATTGTGCCCTTCTTGGGCATCTGGCCCTTCCACTCGCTCATCTTCCACTCTACCACGCGCGTTGACCAGAGAGAATCGCGGTAGGCTTCGGTGGTTCTTGCTATCTTAGCCATCATCTTGACTGC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 486509-488945 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUQ01000001.1 Thermococcus sp. CX2 NODE_1_length_741660_cov_37.093017, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 486509 30 100.0 37 .............................. ATTGGCGATTGATGAAGCGCATTTATTTGAAAAAGCG 486576 30 100.0 36 .............................. CAGTTATGGTGACGTTTGGCGTCTGTATTGAAATTT 486642 30 100.0 38 .............................. GTCTCTTGTGCAGGCTGAGTAGGGTTCACGGGAGCGAA 486710 30 100.0 35 .............................. TTACTTCACTTAAGTAATCACGCTGGAGTTGCAGC 486775 30 100.0 36 .............................. GGTTTATATTGAACTTCCCCGGGACCTTCCGGACGG 486841 30 100.0 37 .............................. TTTGGCGAGGGGTAAGGAGGGCAGCTACATCCTCAGT 486908 30 100.0 37 .............................. CAAGGATCGTCACGTCAAGGTTGCCCTCTTCATCCGT 486975 30 100.0 36 .............................. TAGCCTGAGCCCTCAACTACTGAAACCTGGAGAGTA 487041 30 100.0 36 .............................. ACTGGTTGAATGTCGTAATAGTATTCGATGAGGACA 487107 30 100.0 37 .............................. TAGAGATGCAATGACGATGGTGAACAAGCTGATAGAC 487174 30 100.0 36 .............................. TGTGGAATCCGAACTTTCTGGCCTCGGTGAGGATTG 487240 30 100.0 38 .............................. TGCTGTACTTGGCAGAAATCTTTGCGAAGATGGTGGGG 487308 30 100.0 38 .............................. TCATAAGTTCGTCTTTGGGGAGCTCGGTGGTCAGCCAG 487376 30 100.0 37 .............................. TACCGTGCAGAGACCTGTACCTGTTTGTGATTTTTCT 487443 30 100.0 36 .............................. GTTCCTTTTGCAGAATGCATCGTGTCGAGAATTATC 487509 30 100.0 36 .............................. CCGGTAGATGCGGGCTATCTCCCGCAGTTCGCGGCG 487575 30 100.0 38 .............................. TCAAGTGTCATTCTCGACGAGTTCAGGCTTTACTCAAA 487643 30 100.0 36 .............................. CTTATCCCTTGCAGGTGGAGTGGACAGGCCCCGCCC 487709 30 100.0 39 .............................. ACATGGTGCGGGGTTTTATTATCAGCGGAAGCAAGTTGT 487778 30 100.0 36 .............................. GGGTTTAAATCCGGACTCGGGCGCCGCCACTTGACA 487844 30 100.0 38 .............................. GGGTCACTTTTTACCACCCCGACCGAGCAGTAGTCCAA 487912 30 100.0 38 .............................. TTTCGCTAAAGTAGGTTTTGACCCTCGGGTTCATCTCC 487980 30 100.0 36 .............................. CCGCGGCCTCGTCTGCATCTCCGCCGCCGCCGTGGC 488046 30 100.0 37 .............................. AAAAATGCCTTCGCCGTTTGGGAAGTTCAAGATTATG 488113 30 100.0 36 .............................. AAGGAGGAAGTTCCGGTTAGAGCTGGAAGGAGGGCG 488179 30 100.0 37 .............................. GAACTTCAGTGACTATGTGCGGGAACTGATACGCCAA 488246 30 100.0 37 .............................. CCTGCGAGCTGTGAGGTGAAGGGTCCTTTTTGAGTGG 488313 30 100.0 38 .............................. TCCTCAAACCACAGCTTGAAGCCGGCGAGCTCCAAAGT 488381 30 100.0 38 .............................. ATAGTTACTCACAACCCAGAGACCCTGAACGGAATAGC 488449 30 100.0 37 .............................. GGCGAGGGGTTTCAAGTGTTTGTACTGGGGCATGGGT 488516 30 100.0 37 .............................. TGTATTTTCCTACCCAAACAAGCTCGTCTTTTCCTCC 488583 30 100.0 36 .............................. CCGCGATGATAAACTCCCCAAGCACCAGACCCGCGT 488649 30 100.0 38 .............................. TTGAGGTAGTTGGGTGTCTTTATCTCATAGCTGAATGA 488717 30 100.0 34 .............................. CACTTATGAGATCGAGGGCCTAAACACTCTTAAG 488781 30 100.0 36 .............................. GGGCCTGGTCCTTAGCCTCGACCATTCCCGTCACCT 488847 30 100.0 39 .............................. TTACTAATACGTCGTTGGCATGACTTACGGTTATTCCAG 488916 30 73.3 0 ...............CG...A....CTGGG | ========== ====== ====== ====== ============================== ======================================= ================== 37 30 99.3 37 GTTGCAATAAGACTCTAGGAGAATTGAAAC # Left flank : CCTTTTCCCTTTTAGGGGTTTCGAAGGATTTTCGATGCAGCCTCAAGAGGAAGAGATTCTCGAGTAGGGGCCTTTAAGCGACGTTCACGGGAAACAGGATTCTAAAAACCCGTTGGAAGTCATTGATAGTTTTTTGTGTTTTATGACCTGACGTTACATAATGCCAAAATAAATGTAACGAAATTTTTTCGAAAACTGCGAATGGGAGAGTTCAATTGGGTTTTAAACCTCTTTCCAGACCAAATCCGACCATTTTCGTGATCCGGCTTCTCACACGCTCTTATTCAAAATTAATCGTCTTGGACCGCTTTGGAAGGCTCATGTACATTAGGGCCTATTTAGAAATCCAAAGGTAGGAATTGCGGCATCTTCCAAATCAAGCCAATTGAACGCGCCCTACACGGCCGCGGCGGACTTAGCTACTACCCCTCTGCCAAAAGACTTATAATATTCAAGACCTCTTAGAATTTTTAGGGGCAAAAGAAGGAGAAAACCGCCCT # Right flank : GCAGGGATTAATTACATAATTCTGCAATCCTTCAACAATCTAATTGTGTAAAAGATGGGCCTGGAGGGAAATCGCAGCAAGCTAGCATCAAGTGAAAAGCACTATGGAAAGCTCACAGAAACAGAAAAGGGTAAAAAGCCCCTCACTCGAGGGCGGCCAAAAGCTTCTCGAGGAACATCTTCTCCGGGTAAGCTCCCTCGAACTGAACCTTGTCCTCGCCGTCCACCTGGATGACGATCTTCGGGACGGCCATGACGCTGTACTGGTCGGCCCACTCCGGATACTCGATGGCCTCAACCATGTCGCCCTTTATCTTGCCCTTGCCGGCGTTGGTGTTCTCGATGGCGAACTTGTGGGCCATCCTGACCGCGAGCGGGCAGTACGGGCAGGTCGGGGTGACGAAGACGAGTATCCTGACGTCCCTGTCGACCTTGGCAAGCTCCTCCTTCGTATCGGGCATGAGGTCGGTCCGGGCGTTGCTGACATCGACGATGTCCTCA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 167473-166234 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUQ01000003.1 Thermococcus sp. CX2 NODE_3_length_227100_cov_50.152208, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 167472 30 100.0 38 .............................. CAAGGACGTGGATCCACAGGCGGTCATCGTTCTTGTCG 167404 30 100.0 36 .............................. CACCTTAAAAGACTCAGTTGAATTCTTGTGATAACT 167338 30 100.0 38 .............................. TCGAGTTCATTAACGACTTCCTAAAACGCAAAAACAAC 167270 30 100.0 36 .............................. CACCCAATACCTCAAAGGCCTCAACGACTTCGATGT 167204 30 100.0 39 .............................. CGGGACTGTCGTCTCGAACATCACAACCAACTACACCAA 167135 30 100.0 37 .............................. CGGTTATCATTGTATCACTCTCCTGTCTCTGTAGATG 167068 30 100.0 37 .............................. TATTGAGGGCATAAAAAAGCGCCTTCAAGACATAATT 167001 30 100.0 36 .............................. TGATAGTAAGTGTTCCACGAGAAAAAATAAAATAAG 166935 30 100.0 37 .............................. GACTACATCAGGGTCTACGACACGGCTGGGACGTACA 166868 30 100.0 36 .............................. CAGATCGTTAAAAGCCCTGACAAGAGTCTAGTCCTT 166802 30 100.0 37 .............................. AAGCTAGTCATGGCCCCTGACATCATGCACAATGACA 166735 30 100.0 37 .............................. TAGTAGTGCGTAGGGTGGTGGTTCGTCATTTGCTATA 166668 30 100.0 37 .............................. GATTGTTACGATGGCTAATCCGGATGTGGGCATTGAC 166601 30 100.0 42 .............................. ATGAGGTAGTTGATGATGTCAAAGAGGTCGTCGTCAGTGAGC 166529 30 96.7 37 ...............C.............. TAAGCTGACGCCTCTTGAAGTATTTAGGCTTCAGGGT 166462 30 100.0 37 .............................. TATTTCTTAAGCTGTCTTTCGTTCCCGGCTATAGTCT 166395 30 96.7 34 .............................C CCGCGCGTGTCTCCTTTCATTCCCCCACCTTCCT 166331 30 90.0 39 .............C.C..A........... AGACGGCCGCGGTCAAAGGCTGGTTTGGGGCCGTGGAAG 166262 29 80.0 0 ...........G.C.C..-......A...A | ========== ====== ====== ====== ============================== ========================================== ================== 19 30 98.1 37 GTTGCAATAAGACTCTAGGAGAATTGAAAG # Left flank : GATCGGCAATATCTGAGGGCCGCAGAATTTTCGTTTCTCGTTTTTATCACCCTATTTCTGGAGTTCCGTGTTTTTAGTCCGCTTTTTGCCATTTAAGTTCATCAGAGAGCGCTGGAAGCCCCCAGGAGCATTTCATAACAATCGAACAAAATGTAACAACTTCCAGGAAAAGTGTAACTAATATTTTTCGAAAATCTGCAAAAGGGCATCTGGATAGGGCTTTAGCGCCGTTCCCCAACAAAAGCGAATATTTGAGGCATTAAACCGGCAGGAGAGCCAGTTTTCAAATTTCAAGACCTCACAAGCCGTTGGAAGTCTCATGGACATGGGTGTGCATGAAGTCTTTAGAGTCGCAACGTTGGAGAGAACCGGAAATTAACCTACGAATGGTACCCGAATGGAGGCATCTCCAACCCCCGAAACTGCACCATTATCAAAAGACTTATAAGATTCAAGGTCGCTTACAGCTTTTAGAGACAAATGAGGGAAAAAGCCGCCCT # Right flank : GACCCTTCACTCCCGCTTCCTGTGCCGCTCGTACCAACCCCACTCCTTCTTGGGACCGAAGGCCCTAACACCCTTCTCGACGAGGGTTATCCTGAGCTCCTTGGCCATCTCGTGGGTTATCTCACCGCGCTCCTCCATCCAATTGATGATTTCGAGCGCTTCCTCGTCAGTCTCGCACCTCCTCAGAAAATCGATGATGGTTGGGTTGTAGCCGGTGAAATCCATGAGCTCGTCTTCCTCGACAATGGCCTCCCTTTCGTCGGTTCTGTAAGCGTCTATCGGAACGCCTCCCCCCTCAAGCTCCTCATAGAGGTTAGGAAAGGTCTCCTTGAATTCCTCCTTATCGTACTCCTGCCAAGCGAACTCGTCAATGGGGCGTTTCTTCTTCTGCTCGTCCATACCAACACCTAACTGGACTACGGGTCGAGGGTTTATAAACCCTGAGTGGGAGCCCCTAACATGAAGGGCTCTTACTTTTTGGTTATATTGCTCGACAAGGA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTAGGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //