Array 1 1258691-1258902 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022594.1 Mycolicibacillus koreensis strain JCM 19956 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1258691 29 100.0 32 ............................. AAATTCGTGGCAGGGCTGCGCCCCGTGACATT 1258752 29 100.0 32 ............................. CCCGGTGCCGCACCGCTGCACGCGAGGCACCT 1258813 29 100.0 32 ............................. CCGCACCGTCGACATGCCGTGCGGCCCGGCTA 1258874 29 79.3 0 ...........T..C....A...TC...G | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 CTCCTCCCCGCGCAAGCGGGGGTGTTCCC # Left flank : GGCGCACCAGGATGTCGGGGGTGAAAAACCGCTTCTTGCCGTCACTGTCGCGGCCCATGCACATCAGCGTGCCCTGCGGGTAGGTGCGGTATCCGGCGCGTTCGATCACGTCGCGCACTCGCTTCTCGGTCTTGCTGGTGGCTGCTGACCCGCCGAGCGACAGGTCGCCGGGGCGCGCGGACTTGCGGTTCATCTGCGGCAGCAGCGGCGGAGTTCTGCGCTGAGTCCACCACACCCAGGTCCAGACGACCAGCAGCGCCGACGGAACAGCCGGGTGCAGCAGGAACTCCGTCATGACGGCCACCGTAGGGAGAAACCGCTGGTGGGCCGGTCTCGGGCGCGGACGCAAGCATCTGTCACGTCCTTTGCGCCCGTGACGGTTTCGGCGTGTCGCGCCGGGTGGGGTCGCGGTGGCGGGTTACGCGGTTACGGTGGGGGCAGCACGATCACAACTGAATAGAAACGGGCGTTGTCACGGGTATCGGTGCAGGTCAAGAAGT # Right flank : GACGAAATACTCGGCGTGTAACCGGATGCCCGCTGCAGCAACCGCGGCCGCTGCTGTCACGTCGCATGTGGCGCGCCGCGGGGGCACAGTCGCGTCTCGGGATGGTGCACTGGTAGCCATGCGCGCACTCGAAGACGTCACCTACGCCGACATCGACTGGGGCCGAACCCCTACCACGCACCACGGCGTCACCCTGAGCGGTGTGCGTCGCATCGCGCAGATTGCCGGGGTCTCGTGGCCTCACGAGCCAGAGACCTGCGGCGCGGGGCCTCTGGAGACGGTGTGGGTGTGCGGCGGGCAGGTTCTGCTGTGCCGCGGCTGTGGGCTGGACGCCACCTGACGGGCGGCGGCTACCGGTAGACGGCGCGCACGATCCCGTCGGCGTCGACCTCGTAGGCGCGGGCGCGAGTCAGGCGGCCATCCACCCAACCACGATGCGCGACACCGTGGCCGGTCCGCGGCCGAGGCGGTCGTTGGTCTCGTGGACGTAGTGCCGCCCC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCAAGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.00,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1337232-1336959 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022594.1 Mycolicibacillus koreensis strain JCM 19956 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1337231 29 96.6 32 ............................A CCCCCGCTGCACCGAAGCTGCCCACGATGCCG 1337170 29 96.6 32 ............................T CAACGATGGGGCCAAAGGGCAGCGCGTCGATA 1337109 29 100.0 32 ............................. CCCGCAGCTGCGCCACGTCAGAGCTGGGGCGA 1337048 29 100.0 32 ............................. TTGGTCCGGCAGAACGCCGAGGCGGCAGCTTT 1336987 29 93.1 0 ............T.............T.. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 CTCCTCCCCGCGCAAGCGGGGGTGTTCCG # Left flank : GTCCACGCCGGGCCGAAGTTTGAGCGCACGTAAGTGTCCATGCTGCCCTTGGCCGCCACAGTCAACGTCGAAGGGTCGTCGCTGGGAGAGCCGGTGCCGCTGTCGACGGCCCCGCGGCTTCCCGGCACCCCGATGCTGGCGGCGACCTGCCCCCACGAGTCGCGCACCTTCGCCACCAGCCCCGAGTCGGTGCCGCCGTTGAGTAGCGCCAGCACCAGCCCCACCGCGGCCAGCATCACCAGCGGCATCAGCAGCGAGCCGAGCGTGGATTTGCCTGTCTTCTTCGCACCCATGGCGGCGAGGATGGTCGAGCTGGTGGCGCGCGACGGTGCGCGGCGCGTCACGGTGCGGGCACGGGAAGCGGCGGTGCCGTCGGAAGTTTCGGCGTGTCGCGTCGGCTGGGGCCGTAGTGACGGGTTACGCGGTTACGGTGGGGGACAGCGCGATCACAACTGAATAGAAACGGGCGTTGTCACGGGCAACGGTGCAGGTCAAGAAGT # Right flank : GTGCACTGCTGCATCGGCAACTGCGGCCTTGACATGCGATCCACCGTCTCCGACCCATGAAAGGCAGGCCCCATGCGACGCAACCCCATCGGCTACGCCACGGCGTGCATCCGCTACGTCCACCTCCCGAAGGCGCGGGCGGCGCTGCGGTGTCGCCGCCCTTCTGTCGCGCACCGCGTCGCGTCGGCCGTCGACTGGGAAGGGAAGGTGGTCGGGCCGCTCGGGGTTCTCGTGGGGGGCCGCTCGGGGCCGATAAGTGACGCGCTGCTGGCCGCGTGGCAGTGCGGGGACCACGCCACGGTGCGCCACATCCTCAACGCTGCGGCCAGCTGCTACCGGCACGACCCGGACGGCGGGCTGGGCGCGGTGTCTCCGGTGTCGGAGATGGACGCGATGTGGGTGCGCCGCATCATGTACCGCGAGCGCGGCGGGCGGGCGCTGGCCTTCCAGGCGATGTGGTGGATGGCTCTGGACGATCAGGCCCGGCGGGCGTCCTAACG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCAAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1346364-1346149 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022594.1 Mycolicibacillus koreensis strain JCM 19956 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1346363 29 93.1 33 ...........C................T GTCTACTCCAGCGCGATCCCCGGCCGCATCGCC 1346301 29 96.6 33 ............................A GGGGCGGGCTGTTCCTGATAGTTGCCCCCACAT 1346239 29 100.0 32 ............................. GGCCAGGCCGCGAGCTGGTTCCCCGACCGCGC 1346178 29 93.1 0 ...........T..C.............. | A [1346152] ========== ====== ====== ====== ============================= ================================= ================== 4 29 95.7 33 CTCCTCCCCGCGCAAGCGGGGGTGTTCCG # Left flank : CAACGAAGCGGGGCCGGGAAGCCACGACCAGACTGGTTGATTCATATTTAGATCATAGGTCGCTTTTCGGCGAAATGCCACATATTTAGATCACCGAGCTAGTCGGGCCAGGTGTGTCGCCGTGTCGGCCTCCGGAAAGGCTCACCGTCTCAGCAGGTCAGGAATCGTCGTAGATTTTTGCCTTCCAGCCCGGATCGTTCGACGAGCACCACAGCTCCACCCGCATCCCGTGAGCTTCGGGAGCCAGACGGCTGAGCGTATCGGCGGTCTCCTCGCACAAATCGCGGATGCGGACTCGGGTGTCGTGGTCGAGGGACATGGTGGGCAGGATACGAAGCCGCGCCGGGGCAGCGGCCGCGCGGCGCGGACGCGAGATGCGTCTCGGCGTGTCGCGGCGGCCACGGCCGCGGTGACGGGTTACGCAGCTACGGTGGGGGTCAGCACGATCACAACTGAATGAAAACGAGCGTTGTCACGGGTAACGGTGCAGGTCAAGAAGT # Right flank : CCACCGCGCCGCACGGCTGCGCGGTGCGTCTTCGCGGTTACGTTGCAGCGGACAACGACAGTGGAAGGGAACAGCGATGGCGGTGTGGACGGTCGTCGGGGCCTACAGCGGAGGCGAGCTGATGCTGTTCGGCGCGATCGAGGGCAAGCACCAGGTCGGCGGCGACTTGGGCTATCACGGCTACCAGCCATTCGCTGACCACGTCGATGCCGGAAGCGCCCAGGAGGCGCTGGAGAAGGCCGCGCAGTAACGGTCAGTCGTCGTAGCGGTCGTCGTCGTCGTAGTGGCGGTCGAACCGGGACTCGAATGCCGACTGCTCGTCGAGGGCCTGCTCGGTGAGCATCTGCGCGTGGGTCATCAGCGGTTCGCCTTCTTCGTTGAAGTAGCTGCTGCCGCCGCGGTCGCTGGGCATCGCACCGTCTCCTGTTCCGCTCAATCGCCTGCGTGCTGCATCTCGTAGCCGTCGAGGTCGGAGATGTCGTCGTCGTAGTTCGACGGGT # Questionable array : NO Score: 3.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCAAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1376805-1376410 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022594.1 Mycolicibacillus koreensis strain JCM 19956 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1376804 28 96.4 33 ...........................T GCGAACCCGCACCCCTTCGGGGGTCATGGCGAC 1376743 28 96.4 33 ...........................C AGCAGCCCGCCCGACGCGCTGCGGCTGGACACC 1376682 28 96.4 33 ...........................C AAGCACTTGATCGCTCGCCACGCTGACAAAGTC 1376621 28 100.0 33 ............................ CGCGAGGGCCAGCACCCGCTCAAAGTGGAAGCC 1376560 28 100.0 34 ............................ TACGCCCCGGCCAATCCAACCCAACCGATCGGCC 1376498 28 100.0 33 ............................ CAGCACGACGTCGAGGTAGATGCCATTCAGGTC 1376437 28 96.4 0 ...........................A | ========== ====== ====== ====== ============================ ================================== ================== 7 28 97.9 33 TCCTCCCCGCGTAAGCGGGGGTGTTCCG # Left flank : TCCGGAGGTGTCGGCCGCTAAAGAGTGCACGCCGCACTGGAGATGGTCCGACGCTGCGGGCGATACCTGGAAGTTCACCCGTTGCGCTGAACTGATCACTGTGGTCCGAGACGGCGGCCCGTTGGGGGCGTGCACCCTGACGTACCCGCCCGGCAGCAGGTGGAGCGGCCCAGACGATCTCTGCCGGTATCCAGGGCCGCGGTGACCCGGACGCGCCTCGACCCCGCGGCGGGGCCCCGCGGTGGCAACGTGCATGTGCATGAGCATCTACGACGATGAGGGTGACGTCTTCGACGAGCCCGACTACGAGGCCATCGCCGAGGCGCGGGCTGAGGCTCGGGCTGAGCGCATGGCCGAGATCGCCGAGGCGCAATACGAGCGCTCCATCTACGGCGACTGACGCCCAGCTGCTTGACATGTCGCGGTTATAGAGACAGTATGGGTGTCACAACTGAATGAAAACAGCTCCGGTCGCGTGTAACGGTGCAGGTCAAGAAGTC # Right flank : CCGCCAAGCACGGCGGCCCCGGCACCGGTCCGTGTTCCCGACGCACGTTACGTGTACGTCACCTTCGCCACGCCTGCAACCGTTTTCGTCCCGAAAACCCGTCCCGAAAACAGTCGGTCAGGTCTGGGCGAGTTTCTCTCGGCGTGTCGCGCCCGGATGTAGTTGCCGGGTGCATAGTGCATGTAATGTCCGAGTCGTGATTGTCGCCAAAACAGAGACACGTGTAGATGCGGTGCACGCCGACGGCGCTACGGCGCTGAGCTACCGCCTCCCCGCCGACCGGGCGCTGCTGCGCGCCGCCGCCCATGACCGCGACCTGGGCCACCGCTTCGTGGCCAGCAGGTTCCCCGACGATCTCGGCGGTCCGCCGCTGGAGCTGTGGCGCATCGGCGACGGTGAGTTCACCGTGGTCTCCACCGTCGCCCCCACCGGATTCGTCGGCACCCCGCTGCCCACCGTGGGCCTCGGCGAGCGGCTGAGCATCGCGGTCACGCTGGAGG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTCCCCGCGTAAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCTCCCCGCCGACGCGGGGGTGTTCCG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 1421048-1420529 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022594.1 Mycolicibacillus koreensis strain JCM 19956 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1421047 29 96.6 32 ............................T GAGATCGCCCACGGCATCGACCGTGCCCACGT 1420986 29 96.6 32 ............................C GCCGAGGCGACCGACACCGGTGACGTACCGCC 1420925 29 100.0 32 ............................. GAGCGTTGCCCCCACACAGCGAGGAGCTGAAG 1420864 29 100.0 32 ............................. CGCCCGCACACCATCGTGGCTGGCTCATCCGG 1420803 29 100.0 33 ............................. TCGAAGACCTGCTGCTCCAGCTCCAACGCATAC 1420741 29 96.6 32 ............................A CGCAAGGCGGCGTGCGAGTTCGGGGAGCTGGA 1420680 29 93.1 32 ............T...............C GGTGAGCCCTACATCGAGCAGATTCGTGACGC 1420619 29 93.1 33 ..........................T.C GGCGGGAGCGCCCACATGCTGCCGTCCGGCAGC 1420557 29 86.2 0 T..........T..C...........T.. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 95.8 32 CTCCTCCCCGCGCAAGCGGGGGTGTTCCG # Left flank : GCCGAGTGGGAGTGGGCCGGATCGGTGATGGAACACAGCCGCCGCATCCAGGCCCGGCTGGACGCCTCGGTGAGCACGCTCAAGGCACGCTGGGCACGCGAGGACGGCCGCCTCGACCATGTTCGGCGCACCGCACAGTCCACCGCGGCGGCGGCGGCGTGGGAGAAGACCCTGGCCAGTCTGGCGCGGTGGGCCGCGGACCCGAAGAAGGGGCCGGAGCACAAAAAGGCATCCGGCCGATTCACGGTCTCCGATGTGATGCGCAGCGCGAAAAGCGGCGAGTCACGGCGCATCAACGCGGCCAAGTTGTGTTCCGAGCTGGTCGAGGGCGGCGTCTGGGGCAGTGACGGCACCCATTTCTGGGTACGCGACAGTTGACGCTTCGGCGTGTCGTGGCGGCCGGGGCCGCGGTGACGGGTTACGCGGTTACGGTGGGGGCAGCACGATCACAACTGAATAGAAACGGGCGTTGTCACGGGTAACGGTGCAGGTCAAGAAGT # Right flank : GGTGGCGGTCGCGCGACTAGCGACCGCCACCCCATCGAGGTGCGCACGTGGTGTTACGCGCGCCCATCTTCCTGTCCCGCGCACTTGTCACGTCCTGCGCTTCGGCAGCGACGCGGGCCGCCTCAATGGCCCAATCCGGCGCACACCGCGGTGTGACGATGCTGCGGAGCCCAGGCATCTTCGCAGGTCAGTGCGCCCTCGCCTGTGGCCTCCGATCGGTAAATGTCACGTCCCTGAGTCCTGGAATCGGCACTATTCTGGCCGCAATCTGACGGATTCTGATGTATTACGCTGCAATCTGCATGTGCTACGTTGCGGAAACGAACGTGCATAATGCCGGTTTCGCTCGTCAGGAGGTGCTCACATGCCGGACACGGCAACTGCCGAAGGTGTCGTCCTCATCGACCCCAACGCGCTGTACCGGCCGGGATCGGTGCCGATCATCGGTGCCGACCGGCTGGCTCAGATGCGCAAAGTCGGCACCGGGCCGCGGTATCTGC # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCAAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //