Array 1 1968295-1969254 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP032400.1 Streptococcus iniae strain YM011 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   1968295	    36	 100.0	    30	....................................	AGATAGTTGGTATTTAACTAATCCGTCAAT	
   1968361	    36	 100.0	    30	....................................	TTTTACTACGTTCTGAAGCGTTTATCGGAT	
   1968427	    36	 100.0	    30	....................................	TTATACCACTAAAAAACCACTGCGGGACAG	
   1968493	    36	 100.0	    30	....................................	TTAAATAGATCCCAATATTCTAAGTCGTAA	
   1968559	    36	 100.0	    30	....................................	TTGTCAGTCTGTGATTGCTTAATCCCTCCT	
   1968625	    36	 100.0	    30	....................................	CCTCACCATCAGGCAAAGACCTTGATACCT	
   1968691	    36	 100.0	    30	....................................	GTGTTCGCCGAATAAGTAGAATTAAGAAGC	
   1968757	    36	  97.2	    30	..........................C.........	CCTGCAAAAGATTCATATGCGATTAGTTAT	
   1968823	    36	 100.0	    30	....................................	CAAGTCTTGCAACAACAAGTATCCACTACA	
   1968889	    36	 100.0	    30	....................................	ATATATATCAATGGAAATACCAAAACGTTT	
   1968955	    36	 100.0	    30	....................................	TTAATTCCTTGGTTGTCAGTGTAATAGATA	
   1969021	    36	 100.0	    30	....................................	CGGTTTAGCTGCTCTTGAGAAGATTGTATT	
   1969087	    36	 100.0	    30	....................................	TTAGTATTAAATATAATATCAACACCTTTA	
   1969153	    36	 100.0	    30	....................................	TACAACAGTACCTATAAGTGTGGCTACACC	
   1969219	    36	  75.0	     0	................T.....TG..T.T.TTT..G	|                             	
==========	======	======	======	====================================	==============================	==================
        15	    36	  98.1	    30	GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC	                              	       

# Left flank :   AACCAGAAGTAAAATCAATGATCGAAAAACTTGCTGCAACTATTACCGAATTAATTGCTTATGAATGTTTAGAAAATGAGTTGGATTTAGAATACGATGAAATCACAGTTTTAGAGCTAATTAAGGCCTTAGGTGTAAAAATTGAAACTCAAAGCGATACGTTTTTTGAAAAATGTCTGGAAATCGTACAAATATTTAAATATTTAACTAAAAAGAAGTTACTAGTTTTTATTAATAGTGGAGCATACTTTACTAGAGATGAATTTGAGAAACTGTTAGAATATATTAGTTTGTCTAGTCAACCAGTCTTATTTTTGGAACCAAGAAAGATGTATGATTTTCCTCAATATGTTTTAGATGAAGATCTTTTTATGCTAACTGAAAATATGGTATAATAGTATTAAGAAAGACAATAGTAATTAAAAGGATCATCAAGATAGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTGTAGAAAAAATTTAGCTACGAG
# Right flank :  GGCAATATTTCCCATTTGAATAACTTACATATTCGGAAACCGCTTTCAAAAATAGTTTTTTTATGCTATACTGATAAAAAAGCTAAGTGAGGGCATTATGGAAAAAACCTTTTTTATGATTAAACCAGATGGTGTTAAGCGGGGGCTGATTGGTCAGGTTCTTGAACGTATTGAGCGTAGGGGTTTTGTGATTGAGAAGTTGGAATTGCGTCAGGCTGATGCAGCAATTCTGAGAAAACATTATGATTTTCTGGTTGATAAACCGTTTTTTCCAGAGATTGAGGCTTACATGACAAGTGGTCCTCTGTTGATTGGTGTTTTGTCAGGCAATCGTGTGGTCTCTTCCTGGCGTATGATGATGGGGGTTACAAATCCTAAAGATGCCCTGCCAGGAACAATTAGAGGAGATTTTGGGCAAGCGCCAGGAGACGATGGTGGCATTCAAAATGTGGTGCACGGTTCAGATTCTATCGACGCTGCAAGACGTGAAATTGATATCT

# Questionable array : NO	 Score: 6.16
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:63.89%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.90,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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