Array 1 38-469 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAKG01000041.1 Prevotella dentasini JCM 15908, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================= ============================ ================== 38 49 100.0 27 ................................................. ATATAACGTCAGTATAAGTGATTTGGC 114 49 100.0 28 ................................................. AGTATCGAAAGATTCAGACAGGGGCTTC 191 49 95.9 28 ...............................................GT GAGTCGCGCCATCGTAGATACGCTTGTG 268 49 95.9 28 ...............................................CT TCCACTTCATATAAGCATATTCCTGCCT 345 49 98.0 27 ................................................C GGGCGCGTAGACTTTGTCAACGGATTC 421 49 95.9 0 ...............................................TT | ========== ====== ====== ====== ================================================= ============================ ================== 6 49 97.6 28 GTTGTGATTTGCTTGAAAATTCGTACCTTTGCGGTAGCAACAACAACAA # Left flank : CAACAACCCTCTCCGACAAGTCGGACTACACAGACCTG # Right flank : CAGAATTAAATGAGGATATAGCTTTACTGTTGTG # Questionable array : NO Score: 5.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:-0.5, 7:-0.04, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTGAAAATTCGTACCTTTGCGGTAGCAACAACAACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.57%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 314-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAKG01000026.1 Prevotella dentasini JCM 15908, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================= ============================ ================== 313 49 93.9 28 T..............................................GA TAACGAAAGTAATTAAAGACAGAAACAG 236 49 95.9 28 ..............................A................T. GGATTTAGTCCTGTTATGGAAGATACTA 159 49 98.0 27 ...............................................A. CGACGTCAGCAACAGGCACGACGACGG 83 49 100.0 0 ................................................. | ========== ====== ====== ====== ================================================= ============================ ================== 4 49 97.0 28 GTTGTGATTTGCTTGAAAATTCGTACCTTTGCGGTAGCAACAACAACCT # Left flank : CGACGGAACAGGCTTTCCGGCTCTGTCAATAGCCCCAATATTTAAGAAACCGACAGCGGAAGACACCCGGCACAATCTGGCAGGTGTCTTTCGCTGTCTGCATACAACCTAACACGCCAAGTCAGAATAGTCATTTCCAAAAAAAGATACATTGGTAGGTTCAGGTTAAGAAAGTGTTTGTAACAGTCGGCAACCCCGTTAATCCTTCGTGCATTTATGGATAAAAGTCAACAAGTTACAAAGACAGGGCTATGATTGCCAAAAACCAAGTTACAGAAAGATTCTGTATTATCAATGAGTTTAACAAGAATTTGAGAGTCAGGCTGAGCGAAAGCAGCATCCGCCTTCCTACGATGATAGCGGCAAACGCTATGGGAATCTTGCTGTCAAGACTGGGTTTTCTGTCAGGACGTAATAACTTGTAAATGAGGAGGTTGTTACAGCACTGACAGCATGACGGTAAAAAAGGAAAATAAATACAATACCCACGTCCGAATACG # Right flank : TATCTACGTTATCAAACACACAGCTCATTGTTGTG # Questionable array : NO Score: 4.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:-0.5, 7:-0.04, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTGAAAATTCGTACCTTTGCGGTAGCAACAACAACCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 89077-88569 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAKG01000014.1 Prevotella dentasini JCM 15908, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================= ============================ ================== 89076 49 98.0 27 ...............................................A. GTATCGAACGATTCAGACAGAGGCTTA 89000 49 98.0 28 ...............................................C. GTTGCCGAAAACGCATACAAGCCAATTG 88923 49 95.9 28 ...............................................CG GAATCAACGGCGAGACCATCACCATGCC 88846 49 95.9 28 ...............................................GT ACACGAAAGCAGGTGGTTGGCACACGAC 88769 49 98.0 27 ................................................T TATTGAAATTTTTTATCATCATTATGA 88693 49 98.0 27 ...............................................G. ACTGCCGGGCGTTTCCTAAGCCATTTC 88617 49 100.0 0 ................................................. | ========== ====== ====== ====== ================================================= ============================ ================== 7 49 97.7 28 GTTGTGATTTGCTTGAAAATTCGTACCTTTGCGGTAGCAACAACAACTC # Left flank : CAACAACACGTGCATACGTGTCTGACCTTGCTTTGC # Right flank : AACATGGACAAGGAATTGATTATCAAGACAATACAAGATTGTTGAGAGAAAAATAAAATGATACCGCAAAACAAAATCCTACTCCAAAAGAGTGGGATTTTCGTTTTCTATTAGTTGTTGCTTAGAATAACTCCAACTGCTGTCCGGGGGCATTGGGCGGTTTCGGCTTCTCACCATAAAAGAGCTGAATGTTGGCAAACTGTTTATCTGTTATGCACAAGATACCAACTTTACCAACCTTAGGCAACGCTGCACGTACACGCTTCATGTGAACTTCGGCATTATCCATGCTTGCACAATGACGCACATAGATGGAGAACTGGAACATGGTGAACCCGTCCTTCATCAAGGATTTACGGAAATCAATATAGGCTTTCTTTTCCTTCTTGGTTTCCGTGGGCAGGTCGAAGAATACAAGAATCCACATAATCCGATATTCACTGAAACGGTCGAAACTGGACATAATAATCTACATTTCCGGGTAACTAATACGCCGAACC # Questionable array : NO Score: 4.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:-0.5, 7:-0.05, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTGAAAATTCGTACCTTTGCGGTAGCAACAACAACTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.57%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.90,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //