Array 1 4035-3538 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZBF01000005.1 Prevotella copri strain iAP188 NODE_45_length_12266_cov_47.2611_ID_89, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================= ================== 4034 29 82.8 49 .....A.CG...C...T............ TAGAGAGGTCGAGAGAAGTGAGAGCGGAGCAATTATAGAACATATGGGC 3956 29 89.7 49 .....C.AC.................... TAGAAAGATCGAGCGAAGAGAGGTTTTGACAGCTATAGAACATTTCTTC 3878 29 89.7 49 ............C...T..........C. TAGAGAGATCGAGCGAAGAGAGTCTATGACAACCGGAAAACATGCGTGA 3800 29 79.3 49 .....C......C....T........GCG AAGAGAGTTTGAGCGAAGAGAGTTTGTTACAATACCTGAATATGCCTGA 3722 29 93.1 49 .....CT...................... TAGAAAGATCGAGCGAAGAGAGGTTTTGACAGCTATAGAACATTTCTTT 3644 29 100.0 49 ............................. TAGAGAGGTCGAGCGAAGAGAGTTTGTTACATTCATAGAACATACGGTA 3566 29 93.1 0 .........T..............C.... | ========== ====== ====== ====== ============================= ================================================= ================== 7 29 89.7 49 CATATTCGTCACATTCGCTGTATTGAAAT # Left flank : GTATTGAAGTTAGAGACGTCGAGCGAGGTAAGCGCATAGCAGCAAGTGAACATATCGCGCATGTCCGTCACATTCTGGGTATTCAGATTCTCAATACCTTCAATTTCGGTCAGATAAAAACAATTTCCGAACCACCAACAACAGCTCGTTGGTCTTGCATTGGCAAACGAAGCATCGAAGACCACCTTCTTGATATTTCCTTTTTGGGCCTCCCACCCCGGATTGTTAGATTCCACATTAAGGTCATAAGCTTCTGCAGGCTTTACTCCCTTGTAGCGGAATGTAAGAGTAGCATTGTCAAACTCGGCATAAGCACATCCAGGAGTAAAATAACCATCCGTGCCGCAGTTGGCATATTTGCGGTCGGTCTTGCTATCGCTATAACCTTTGAGGTTTTTGCAACCTGAGAACATATCAGAACCAAATTCCACCCTGGTCGTTACAAACTCATCGCTAGCGTAGATGGTTGTGAGAGCGGAGCAATCAGAGAACATGCTGTT # Right flank : ATTCAAGGCCTGTAATTGTTTCCAATGTACTGCAGCCAGCAAAGAAATGTTCCAACGATGTAGGTGCGTATGTTTTGAAACTCTCATCGAAAACGATATTCTTGATATTTGTAGTTTCTATATCGTACATATCTTTCACCATCGGTTCGTCATTCACTATAACTAAACGGCTTAAATCAATACTTTCTAAATTATTAGAAGTGATTTTTTTGAAAGTCAATTTAGTGTTCGTAGCATCCAACTCTGCTACATAATCAGAAATAGTGGTTGCCGTGTTCAGATCGTATATGAATGCGCGGTCTGCACCTTTATTACCATCACCAACTAAATCGAATATATTGTATGATAATCTCAAAGTATATTCACCCTTGTTTAAAATGCTTTTATACACTTTTTGCTCTGTTCCCTTAATTTCATCAAGCAGTTTTCCATTTAAAGTAATAAAGACATAGTTAGAGTTCTTTGCCGAAATTAGATATTTAAATGAAAATAATATAGGC # Questionable array : NO Score: 3.46 # Score Detail : 1:0, 2:0, 3:3, 4:0.49, 5:-1.5, 6:0.25, 7:-0.12, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATATTCGTCACATTCGCTGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 611-379 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZBF01000027.1 Prevotella copri strain iAP188 NODE_53_length_7766_cov_46.0999_ID_105, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 610 36 100.0 28 .................................... GACTTGGTATCGCAGGTTTGGCTACCAG 546 36 100.0 30 .................................... CTCTGACGTATCTTATTCTTATACGCGTCA 480 36 100.0 29 .................................... GATAATTTGCCATATTGATTTGATTTTGA 415 36 86.1 0 ............G.C.........AC...A...... | T [395] ========== ====== ====== ====== ==================================== ============================== ================== 4 36 96.5 29 GATGAACATGCATTATGAATAGTGGGTAAGTACAAC # Left flank : GAAACTATCTGTGTGGAAAATCTTTCAATCAAGGATGGTATGTTGCAGGACAAGAAACATGGTAAGCATAATAAGCAAAAACGTTCTCGCAATAAGCTTATAGTTGATGCAGCTATGGGCATGTTGCGTATCAAGCTGCAGCAGAAATGTAAGTCGAAAGGAATCAACTTCATCAAAATTGAACGTTATTTTCCTTCTTCGAAGACTTGCCACTGTTGTGGAAAAATATTTAAAGGTTTACAGTTAAGTCAGCGTTCATGGGTGTGTCCTTCATGTCGTGCAAAGTTGGATAGGGATGTGAATGCTGCTATTAATATTAAAAATTTTGGAATTAGCAATAGTTCCCTAGGGAGGTGTACCCCCGAAGTAAAGTCTGTGGAGCATCGTAAGCAGAAACGAAGAAATGCCAAAAGCAGTGACGTTTCAGATGTAGAGAAGCAGAAATAAGAGAGCTCTAACATTGAGCAAATGCCTGTTATACAGAATAATATTTATCTGAG # Right flank : CATGCAGTCGCTATCCATTCGGCTGACGTCTGATGGCTTTACTTTCAGAATTTTTCATTAGGCAAAATGTATATTACGTATTTGTTCTTCTCTACATATCTTGTATATCCTCTAAGATTCAGAATATGCAGATGGAATTAGTAAAAAAATAATTGATAGTTAATTATGGATAAGACAATAAATACAACGCTCATCATAGGAAATGGGTTTGATTTAAGTATGGGTAAACATACCAGTTATAAGGAATTTTATGAGAAGCTGGTAAAGAATAAAGGTTTTTGGGATACCTCAAATCCGCAACCTATAGGGTTTCGTGGGAATTTACTTGTAAAACGACAAAAATTCTTTTATTGTACATATTCCTTGGGCATAACAGAAA # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAACATGCATTATGAATAGTGGGTAAGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 16885-14289 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZBF01000037.1 Prevotella copri strain iAP188 NODE_12_length_75971_cov_42.5719_ID_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 16884 30 100.0 35 .............................. CCGTTTAATGAGCATGATACCCACGTTGTTTGTGT 16819 30 100.0 35 .............................. AGAAGTGACAAACTTTATAAAAAGTGAATATAAAA 16754 30 100.0 34 .............................. TTATAACTTTAATTACGTAGCCTAATGAAAAAAC 16690 30 100.0 36 .............................. TTGTTGATGATTTAGTTGCTGATTTCCGATATCTGT 16624 30 100.0 37 .............................. TTATAACGAAGAGATGGCAGATATGCATCTTTGTCTC 16557 30 100.0 35 .............................. GTAAGAAACTCAATTTCAATTGGAACGGCAAAACA 16492 30 100.0 38 .............................. TGAATGGCCGTCACCCCTTCTTGGAAATAGAACGAAAT 16424 30 100.0 39 .............................. CCCACCGCCCCCTTGAGTCTCTGATGTCCCTTTGCTAGA 16355 30 100.0 34 .............................. GTCTATCGTCGCCATTGAACGTGCAAAGGCAACT 16291 30 100.0 36 .............................. ATGCTTGAAGGTTACTAAGGCTCGGTTGCGCCCATG 16225 30 100.0 39 .............................. TAGGGTGGGACCCACGGCTGCTGCGCAGCCCCCACCCTA 16156 30 100.0 38 .............................. ATGTTGTTTCTACTCTCCGCGAATCTCTCTCTGCTACA 16088 30 100.0 34 .............................. GAGACAAAAGGTCAACATTTCCATTGTAAGAAGC 16024 30 100.0 39 .............................. GCTTTTTGTGCACCAGCTTGTACACTAGTTTTTACTTTA 15955 30 100.0 36 .............................. AGGCTCTGGAGGGCGAACTGGGCTGCAAGCTACTGA 15889 30 100.0 37 .............................. GATAGAGAAGCAGATAGAATACTATAAAGATGTGATA 15822 30 100.0 34 .............................. AGAGCTATTCCTGCGTGGATATGCAGTATAAGGA 15758 30 100.0 36 .............................. GAAAAAGGATTTTGAGTCAAAGTACAGCGAGGATGA 15692 30 100.0 34 .............................. GGCTTATTTGTCGCCTAGCGGAATTTAACCCCCT 15628 30 100.0 38 .............................. AAGAATGATGCAAGTAAAACTCAGGCAAAGCTGAGAGT 15560 30 100.0 37 .............................. TAGTAAAATATGGATATGAATATAAAGGCATATCCCG 15493 30 100.0 34 .............................. AGGCACGCCGCAAGCAGTATATCCTCGGCATCAT 15429 30 100.0 34 .............................. GTTATGATGAAGAGGATTTCGCTACTGATGGCGC 15365 30 100.0 34 .............................. AAAAGAACGCAGTTATAAATCTCGCTATTGAATA 15301 30 100.0 35 .............................. TTCAGTACCGCTACGCATGGCGGAACTACGCTCCG 15236 30 100.0 36 .............................. AAGTGTTCCTTGATTTTTTTCCAGAGTGCGCAGTTG 15170 30 100.0 37 .............................. GCGGTTATCTCTGCCTTGGCAGTAATGAGGAGTTGCA 15103 30 96.7 34 .............T................ TAGAATTATGGCAGTAAATCAAAAAGCAATCGGG 15039 30 100.0 35 .............................. GCGCATGCTCATGACCACCGTGGGCGCAGCATACA 14974 30 100.0 36 .............................. AGTGGAAGAACTATCTCACCAAGAAGGAGGCATCTG 14908 30 100.0 35 .............................. GAGAAGGGATTGATAAATTCACAGGAGAATGCTAT 14843 30 100.0 37 .............................. TTTCAGCCATCATTGATGAAGAGGTGAAAGCTGTAGA 14776 30 100.0 34 .............................. CAATTTTCAGCACCTCGTGTGACAATCACGAACC 14712 30 100.0 34 .............................. ATTTGGTCTAGCATATCATATACAATAGTAATAA 14648 30 96.7 34 ............................T. TTTTTTCTAGGTTTTAAAAAGAAAAAGGCTGGAA 14584 30 100.0 37 .............................. AGTACAACATCAAGGATGAGTGCATCAATCCGCACGT 14517 30 100.0 35 .............................. ATCATCTTTGCGCCTTCGATTGGTATCTCTTGATC 14452 30 100.0 36 .............................. GAAATATAGAGAGAAAAGCGGGCGTGCGTATATCGC 14386 30 100.0 39 .............................. ATAGACAATATGTATTGAGTTAATTCCGAACAAAGTTCT 14317 29 80.0 0 AA..T...C................-..T. | ========== ====== ====== ====== ============================== ======================================= ================== 40 30 99.3 36 GTTCAAATTGTACCTTTATGGAATTGAAAT # Left flank : CCTTTTAAAATGTATTGGTGATATGTATGTGATTATAGTTTATGATGTTGGTGAGAAGCGAGTAGGCAAAATGTTGAAGCTTTGCCGCCAATATTTGTGTTGGATTCAGAACTCAGTTTTGGAGGGAGAATTATCTGAAGCTAAACTTCGGGAATTGCAAATGAAGATGAAAGCTATCATTGATGAATCCGAGGATAGTGTCATTGTTTTCACCAATAAAATGGGGTATAATATGAACAAACAGATTCTTGGAAAAGAAAGAATGTCTACCGATAATTTCTTATAAAGAGTTGTCGATGTGGTTCTAATTTTCCGTTTCTAGGTTCGGAAAAACCTCCGAAAGTGTTCTTTGACTTATTGAAACCTCCATAAATAGGCAGGTTGTCGTAAGGCCGCAGAAAAAATATCTTTAGGCATCGACATTTTTTCTGAAGATTTTTTGTATCTTTGCACCCGCAAACCTATTGATTCTTCGAGCATCTATGTCTAAGGATTAACGG # Right flank : CAGAAGTACTGATAGCTTTAGTATTATACCGCAATCTCTAGTTATAAGTGTTCAGAATGTGTCTCCTCCTGCCACAGCATTCGACTCCTTCAGCTATCGCATTCGACTCCTTCAGCTAATGCATTCGACTCCTTCAGCTAATGCAGCCGTCTCCTTCTGCCAACTCAGCCGTCTCCTTCACCTAATGCAGTCGACTCATTCAGCTAACTCAGTCGTCTCCTTCAGCCACCGCATTCGACTCCTCCAGCTATCGCATTCGTCTCCTCCGCTCACCGCATTCGTCTCCTTCAGCCACTGCATTCGACTCCTTCAGCTAATGCAGCCGTCTCCTTCAGCCAACTCAGCCGTCTCCTTCAGCCACCGCAGCCGTATGTGTCAACTCAATGAAGTAGATGAACTCGTGAAATGAAGTGGATGAACTCGTGAAATGAAGTGGATGAGTTCGCATAATGAAGTTCATGATTTCTGCATAATAATTAATACATGCGAATGGTAAAGCA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTGTACCTTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //