Array 1 8332336-8332790 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCBA010000001.1 Actinomadura luteofluorescens strain DSM 40398 Ga0104561_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8332336 28 75.0 33 ACG....ATC.C................ CCGTGCAGGTATTCAAGAAGGCAGAAAAGGCGG 8332397 28 100.0 33 ............................ AGGTCTCGGCGTACCTGCGCCACCTGGTCGGGC 8332458 28 100.0 33 ............................ CCGCCGGCGCTCGTCCGGCGCGGCCCGGTGGTA 8332519 28 100.0 33 ............................ TGCCCTCCATCTCCTGATCGGTCATGAGCCACG 8332580 28 100.0 33 ............................ GAACCGCGCCCCGTACTTCTCCGCCGCCATCGC 8332641 28 100.0 33 ............................ CGCTACACACGCGCCCACGCAATGGCTGCCCTC 8332702 28 96.4 33 ...................T........ GCCACCCGACTTGCGCTGGGTCACACCCCAGCA 8332763 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 96.4 33 CTCGGCCCCGCACGCGCGGGGATGGTCC # Left flank : GGGCCAACAAGGCGCGGAGCTGCGCGGGCGTGGCCGGCCTCGAACCATCTCCGCGGGTGCGGGGCCGCCCCATGCAGCCGGTCCGCGCCTGGGTGGCTGCGGACCGGCACCGCTTACGCGGGGCCGACCGCTTGGCCGGACCATCCCGCGCACGCGGGGCCAACCGGACGCTTCCGAAGCCCCTCATGATCGACGCCGAACCGTCCCCACGTATGCGGGGCCGACACGATCCGACAGCACCTCGCCACCATCTCCAGCGAACCATCTCCGCGTGTGCGGGGCCGACCAGCTCCTCGCCAAGCCGCCGCTTACGCATCGTGGACTATCCCCGCGTGTGCGGGGCCGACTCGAACCCTGTCACCCGGCTCGGTGTCGAGTGGGGACCATCCCCGCGGGTGCGGGGCCGACTCCGACATCTCCTCCGGGGTGGAAGCGAACACAGGGCCATCCCCGCGGATGCGGGGCCGACTCGCGGTGGATCTCCAGCGCGGTCGTCGCCG # Right flank : CGCACGACGCGTCCGAGGCGCTCGGCAAATACGGCTCCAGCACCGCGGCGGACCGCAGCAACGCGTGCAAACGATAGACACGCTGTGACCCCTTGACCGGCTCGGCAGGCACCGCCTCCCAATCTGTGCCCGTGACCAGACACCGGGGCACGCGCACACCTGCCGGTCGCTCACCGCGTACGTGCCGATGCAGCCGACCCATCCGCTGCAACAGCAGGTCGCTCGGGCACAGGTCCGTGACCAGGAGATCGAAATCGATGTCCAATGACTGCTCGGCGACCTGGCTGGCCACCACGATGTGCTTCACCGGACGCCCGCCCGCGCTGTCCTCCGGCGGTCCGAACCGCCTCAACAGGTCGGCGTCCTTCCGTGCCCGGTCCAAGTCCACGAAACGGGCGTGGGCCACGGTGACCTCGTCCACCCCGAACCGGCTCCGCAGGAACTGCGCGGTCTTCAGCACCCGCCCCACCGTGTTGCGGACGACCAACGCGCATCCGCCG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGGCCCCGCACGCGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8372553-8373869 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCBA010000001.1 Actinomadura luteofluorescens strain DSM 40398 Ga0104561_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 8372553 30 96.7 31 .............................A GTCGTAGGGTTGTGCGCATCGGATGGTCCCT 8372614 30 93.3 32 ............................TC GACGACGAACAAAGAAGCGGACCGCCCCCCCG 8372676 30 96.7 31 .............................T GGGCGATCGCGCCGTCGGACACGCGCGTCTT 8372737 30 96.7 31 .............................T CCTGCTCGGCCAGCGTGGTGAGCCGCTGCCA 8372798 30 100.0 31 .............................. AAAGGACCCCCCGGTAATGGAGATCAGGGGA 8372859 30 100.0 31 .............................. GCCAGGGCGTTGGTGCCGGCGGCCTCGGTCA 8372920 30 96.7 31 .............................A CCGCGGCGACTGCCGACCTCGCCAAGGAGTT 8372981 30 96.7 31 .............................A CGCACGCCCCCGCCACCAGCAGCGCCGAAGC 8373042 30 96.7 31 .........................G.... AGAGCAGGCTCAGAAACCATGGTGGTCCTAC 8373103 30 100.0 31 .............................. CGAGAACCCAGCAATGCCCGTTGCTCTTAGA 8373164 30 100.0 31 .............................. AGGAGGCCCGTTGACCCACACCGAGCAGCGT 8373225 30 96.7 31 .............................A CCGGCTCGGTCAACGAACTGCCGGTCAAGGG 8373286 30 100.0 35 .............................. AACATCAGGTCAGCCCGCGACCACCGGGCCTTTTT 8373351 30 96.7 31 .............................A CCAGCACGCCGACGGCGAGCGGGTGGATGCT 8373412 30 96.7 31 ......................G....... GGAAGCCCTCGGCAAGGTCGGACCACTCCAG 8373473 30 96.7 31 .............................C GACATGCCACGACACCCCCAGCGGACGCAGG 8373534 30 100.0 31 .............................. CCGACTCCTCCAAGGGGGTCCGGTTCGGCTA 8373595 30 90.0 31 ......G.........T............A CGTCAGATCGAAGTCGCTCGGCCGGGACTCG 8373656 30 93.3 31 .....................T.......A CGCTCACCGCTGAGACCCCGCTGATGACGCC 8373717 30 93.3 31 ...........................T.C GAAGGAGAACCAGATGGGCAGTGCATCGGCT 8373778 30 90.0 31 ..C.........G................T ACCTGCCACGAACGAGTCGGTCCGCCGCCTA C [8373798] 8373840 30 70.0 0 CC....A....AG...T.......C.G..A | ========== ====== ====== ====== ============================== =================================== ================== 22 30 95.3 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : TGACCTTTGATGATCAGCCGCAGCCGCACTGACAATGCGGGCGAGGCACGTGTCAATGGCTCAGAACTATGCCCGCGCCCGAGCGCACCGGAAGCCCAACAGTCGGCGCCGCGCGCGTCGACTTGCCATCTCGCGTGCGCGGGGAGCACGGGAGTAGAAAGCGGCAATAAGTGGTGACAATGGACCATTCCCGCGTGCGCGGGGAGCGAAAAGGCCCGGTGATCGCGGGCTGACCTAGGACGATCCGGCCACCCCCGATGGCACGAGTTGATACCCCGACCATGGGCCACCGCGTACCATGAAGATCATCGCACTGCTGCGTCAGCTCCGCCGGAACCGAGTGAATGTGCCAGCCGCGGGACCTGTGAGCGCTGGCCCGATGCAGTCGGCGCAGGCAACTCCATTGACGCCACGCAACTCGCGGAAAGTCCTGTATGTCCGTTTGTTTAGAAGTGCTCGAAACCAGGCCCGCACCACGCTAAGAGCCCAGGTCGCGGAGT # Right flank : ATGTTGCACGGCGCCTTGGTTGCCGCCAGACCCGCACTGGTGAACCTTCCATGACCGTGGCCCCCTTCGTGCTGACCGGCGGGAACGGGGTTAGTGGTACCTGGTGGCCTAATCGGCGTCCGGTGATTTGGTGCTGTTGTGCGGCCTGTCTTGTTCGTTTCGGGTAAATCATTTCCTGCGGCTAATTAATGTATCTCCACGGCTTCTGGTTCGCGGGGCGGTGGTAGGCCTATGTCACCATCTTGGGTGCCCATAGTCTCGCTTAACTTGTGAAGAAGGGGGGTTGGTTGAAACGTTCATGCAGTTGTTCGAGCTGGTGAGAGTCCTGGCGAGTGGGGCTGGGAAGTCGACTGCGGCCAGCTTGGGCTGGTTTTGCTCGTGGAAATTGGTCGCTCGACGGATTATTAGGCATACTTCCTGCGGGACGGAGTGCGGGGAGGTGAGGTCTTGAATTGCTTGGGCTAGTGTTGTGATTGCCTGACTGCCTTTGGTTTTGGCGG # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //