Array 1 5199520-5200034 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP040861.1 Klebsiella pneumoniae strain Xen39 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	============================	=================================	==================
   5199520	    28	 100.0	    33	............................	TCGCTGGAGTGGCATCTATGCAGGTAAGATGCA	
   5199581	    28	 100.0	    33	............................	CTATCACGCCGTCGTAAACTTCTTTGAGGTGTC	
   5199642	    28	 100.0	    33	............................	CCATGACTGATATCACCGAACTGGCGAGAGAGC	
   5199703	    28	 100.0	    33	............................	TACTCAGTGAGTGAGAGGGTTTGAGTATCGTCA	
   5199764	    28	 100.0	    33	............................	CGAGCTCATTCAGTCGCTGGAGTCGGCGGGCGA	
   5199825	    28	 100.0	    33	............................	TTCCATCATCTGCGGCGGGATAGCGCTGCGGGT	
   5199886	    28	  89.3	    32	............C.........C...C.	CTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 	
   5199946	    28	  96.4	    33	..............T.............	TTCATCACGTGTGAGCGGATTTGGCTCTATCCT	
   5200007	    28	  92.9	     0	...................A.......T	|                                	
==========	======	======	======	============================	=================================	==================
         9	    28	  97.6	    33	GTCTTCCCCACATGCGTGGGGGTGTTTC	                                 	       

# Left flank :   TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCAACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGTTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT
# Right flank :  TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGTATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATATGTTTTGAAAACTGTCCAGCGAAAACCCGGATG

# Questionable array : NO	 Score: 6.14
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTTCCCCACATGCGTGGGGGTGTTTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [2,9] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-11.50,-10.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.37   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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