Array 1 212611-211116 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAH010000006.1 Salmonella enterica subsp. enterica serovar Derby strain GZ19MPS17 YZU1958_006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 212610 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 212549 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 212487 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 212426 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 212365 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 212304 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 212243 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 212182 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 212121 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 212060 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 211999 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 211938 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 211877 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 211816 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 211755 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 211694 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 211633 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 211572 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 211511 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 211450 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 211389 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 211328 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 211267 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 211206 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 211145 29 93.1 0 A...........T................ | A [211118] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 230011-229251 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAH010000006.1 Salmonella enterica subsp. enterica serovar Derby strain GZ19MPS17 YZU1958_006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 230010 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 229949 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 229888 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 229827 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 229766 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 229705 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 229644 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 229583 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 229522 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 229461 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 229400 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 229339 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 229278 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //