Array 1 6788-5433 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHF010000002.1 Listeria marthii strain FSL W9-0650 NODE_2_length_489679_cov_132.838567, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6787 36 100.0 30 .................................... ATGGAAAAAGACAATGTTAAAACTCCCGGC 6721 36 100.0 30 .................................... TTCACTACGCGGCTAAGTGCTTCGATTGTT 6655 36 100.0 30 .................................... TTAAAGTCTATAGCTAATATTTCTATTATT 6589 36 100.0 30 .................................... GATACATTTTAGGTCTTTGGGTGCTGGCTG 6523 36 100.0 30 .................................... TGGGATTTTCCGTTTTTATATAAATAAGAG 6457 36 100.0 30 .................................... GCTAGTAGCGGCTATTGTGACAAATTTCGG 6391 36 100.0 30 .................................... CTGATTATAAACAAGTAAGACAACTAATGC 6325 36 100.0 30 .................................... TAACGGGATGTCTATATATGAGTCTATCGA 6259 36 100.0 30 .................................... CAGTGGAAGTGAGATTTTAGCAGCAGATGA 6193 36 100.0 30 .................................... GAGGAATTGAAGTATTTGTCCCGGTAAATA 6127 36 100.0 30 .................................... AATAGGCGCTGGCTTATTGTAAGTGCTACT 6061 36 100.0 30 .................................... CAAAATGGAAAAAACTTATTGGTACAATGA 5995 36 100.0 30 .................................... CTATCTATTTGTAACGTGGGTGTACGTGTG 5929 36 100.0 30 .................................... GCTTGGAGGATGAAGTCATTAATAAAGTGA 5863 36 100.0 30 .................................... GACTATTGCCCGTGGTGCGGCAGATTGTTG 5797 36 100.0 30 .................................... GCTTGGAGGATGAAGTCATTAATAAAGTGA 5731 36 100.0 30 .................................... TGTGGCGAAGTTAGAAGTTAGATATCCGAA 5665 36 100.0 30 .................................... TTGGAAGATTAAAAGTTTAGAAGATATGTG 5599 36 100.0 30 .................................... GCTTGGAGGATGAAGTCATTAATAAAGTGA 5533 36 94.4 29 .........................A........C. ATCTGATGAAGATAACTACGCTGAAAAAA 5468 36 77.8 0 .G....A......A......A..G........T.TA | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 98.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGACAAGTTGACTGCAACAATTAGCGAGTTAATAGGCTATGAGCTATTGGAACATGAACTGGATTTAGAAGAAGATGAAATTACAGTTATTGAATTATTTAAAGCGTTAGGAATAAAAATAGAAACTAAAAGCGATACAATTTTTGAGAAATTAATTGAAATTGTACAAGTCTATAAATATTTATCAAAGAAGAAGTTGCTAGTTTTTATTAATGTATGTGCTTATCTTACAAAAGAAGAGTTGTTAGAATTAAGAAGGTATATTTCTTTGTATCAAGTAAAAGTTCTGTTTATTGAACCTAGAAAAATAGACGGCTTTCCGCAGGCTATTTTGGATCCGGATTATTTTCTGCATGTGGAAAATGGTGTTTAAGGGCTGGACGTTCTTTGAAAATAAAATATTATTTAATTAACTTATTAAGCAGCATTCAAAATTGAAATCTTGCTATGGATAAGTAGCGCGATTACGGAATCTTGGAGGATAAAAAAATTCTACGAG # Right flank : AGAAATAAAATCTTTCACATCAAAAGTTCTCGTTAGCCTTTAACAAGAACTATAAAAGTTCAAAAAGGAGGTAAACCAACCACATGACACAATATCACTACCTCGCTTCAAAGTCGCTCCTACAAAAAAATGAAGATAAGCTTGCTTCCCCTTTCTTCTATATAAACGATTTGGATTTTTTAAACTTAAATTTCGAAGTAAACATCGACCGTGATACAAATGATTTATTCTCCTATTCAATACACTTCAATCAAGCTTGCGAATTTCAGGTTGCTATAAGCGAAGGAGAATTACCATTAAAAGGCGAAGTGCAAAATAACGATTACGAATCTAAAAGTTTAAAAATCTTATACGATTACATTATAAATGCGAGTAAAGAAAGCGATACACTTGAACTATATACTTCGTGGAACGGCGAGGAAAATCTTCCTTTAACAAATAAAACAGAACTATCCATAGAGAATTTAACTCCTGAAAGCTTGATTTTAAGCGACAGAGAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 261076-261819 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHF010000001.1 Listeria marthii strain FSL W9-0650 NODE_1_length_907658_cov_106.021382, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 261076 29 100.0 34 ............................. AAAATTATCATCACTTTATTATTGCTGTCGCCTG 261139 29 100.0 37 ............................. CTTTACTACTCTCTTATAATAACATGGATTGTGTTAC 261205 29 100.0 37 ............................. TTGATGGCTGCTGGATAAATGGTCGCAGTGCGGATGT 261271 29 100.0 36 ............................. CCTTTCTGTAGATACCAAAAGAGCTTAGTTTTCCCA 261336 29 96.6 35 ..............G.............. ACACTTATCCACCTTTCTAAAGTTAAATGCGTTAG 261400 29 96.6 34 ..............G.............. ATAGGCAAAGTCGATGTGCCGATTATTATAGTGA 261463 29 100.0 36 ............................. TTTATCGATTTAAGCGATTGTAATTGCGCTATTGCT 261528 29 96.6 36 ..............G.............. GCAATTACAGACATAAACGACACGAAAATCATTACT 261593 29 100.0 38 ............................. ATGCCAATAAACTCACCATATTTCTTGATGTGTTCACA 261660 29 96.6 36 ..............A.............. AGAGCAACCTGGTCTAAAGCAATAGGTGTCACTTCG 261725 29 96.6 37 ..............A.............. TTCGATGGCTATAACGCACGTTTGCATAAAGGCGAAA 261791 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 98.3 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACTGAACGTTTACAAAATTCAAGTATCAAAGAAATCATCACATCTGACTCTATCGACCTTCCAGAAGACAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGGATTAATGCAGAAAACAGTAACTTTTAGAGTTGCTGTTTTTTTGCGTTTGGTTGTCTGTCGACCTTGGGTAGCGTGAAAAATGCTGGGGATCGACAGAAAGGTGAGAATGGTTGGAGTGAGGGGAGTTTGGTGGTTTTTGGTTTTGAAAACCATGTAGAGAAGGATGGATTTTCATTGATTTTTAGTCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCATTTCCAATGCCTATACAAAAAAGCCAACCAACAGGATTTAGGCTTATTTTTTATCCCCCCGTTAACAATTCCGCAACAAACACACCAAAAACCCCCAATTTCCTCCGAACCTCCAACTACACCACACGCCCAACCTATGCTAAACTCAAAGAGAAGCCAATACCACATACATAAAAGGAGGATTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATTCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACCAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAACATCCCGAAAAACATGAAAGAACTAGCAAATAATAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGCAAAGAAAGCAACACAATTAGTGAAGTAGAAATTTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGACATTTCAGAACCATGGTACTTAAG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGATACTTAGTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //