Array 1 1019160-1020348 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029995.1 Salmonella enterica subsp. salamae serovar 56:b:[1,5] strain SA20053897 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1019160 29 100.0 32 ............................. CCTTTATCGGGCCGATGGCATACCTGGTATAG 1019221 29 100.0 32 ............................. GCGTCCGGGGTAGTGATAAAACTCAGGGTGTG 1019282 29 96.6 32 ............................A ATATTCCACTGCCTCATGGCGCCGGGCGGTTC 1019343 29 100.0 32 ............................. ACCCGTATGGTCGGTGGTATCTGGCAATTGCG 1019404 29 96.6 32 ............................A GCTTCAGAGCGGGCATTATGTCGCTGGTGTGG 1019465 29 100.0 32 ............................. GGACGCTGGCATATACCAGCACCATGACATAG 1019526 29 100.0 32 ............................. GCGGTGCGGCATGAGCAATACATTTTTTATCA 1019587 29 100.0 32 ............................. GCGCGTACTTTCTCAACGTCTGCCCGGCTCAT 1019648 29 100.0 32 ............................. CCGCCACGTTTGAAATCACTCAGGGCGGGAAA 1019709 29 100.0 32 ............................. GCGCTGGGTCGTTTCCACCAGCTCAACGCTGA 1019770 29 100.0 32 ............................. TTTTAGTTGAGCCATTTTGGTAGCTGCAATCC 1019831 29 100.0 32 ............................. CGTTCGGATAGTCGAGTGAGTTCAATCAGCGC 1019892 29 100.0 32 ............................. GCCGAAACTTAGCCCTGATACCGGACGATAAG 1019953 29 100.0 32 ............................. CACACTTTTGGTGACCCGTCGTGATTCTTCCC 1020014 29 100.0 34 ............................. CGGCGTATCTGGGGCCGGACGGCACGCTGCCAGC 1020077 29 100.0 32 ............................. AATTAATTTAATCACGCCAGCCTCACAATATA 1020138 29 100.0 32 ............................. TTGACCACAACGAATACACAGGGAACGGCGTA 1020199 29 100.0 32 ............................. AATGGCGGAAATAGACGCACGCGGACCCGGTA 1020260 29 96.6 32 ............................C TGTATGTCGTTAATATGGGGATCGCTGAGGTC 1020321 28 86.2 0 ....C........C.........-.G... | ========== ====== ====== ====== ============================= ================================== ================== 20 29 98.8 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTTTATTTTCTCTATACGAATTTCGATGAGTGTTTAAAAGCACTGATAAATTTTCCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAATTAGTTTATAAACAATGATATACATTTAGA # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCGGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTAAGGGCCAGACCAGGATTAAGCCTGTTGGTCCAGGATGAGTCTACGTCGATCTTGTTCGACACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACTTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTCATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGACTTTTCTCGGTATTACCCGAAGAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1037648-1039750 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029995.1 Salmonella enterica subsp. salamae serovar 56:b:[1,5] strain SA20053897 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1037648 29 100.0 32 ............................. ATGATCGTCTGATCATCAAATACGGTCTCAAT 1037709 29 100.0 32 ............................. ATGCAATAAATTACTTTGGCAGTAAGACCAAA 1037770 29 100.0 32 ............................. ATCCGAACGCAGACCCTGAGACGGATTTCACC 1037831 29 100.0 32 ............................. TGGGCGCGGCTTAGCCTGGTATTCACTTCCAC 1037892 29 100.0 32 ............................. CACTTGACAAACTCAACGTTGATCAGGCGATC 1037953 29 100.0 32 ............................. AAAACGGTGGGACCATCTATGTACGCTAATGG 1038014 29 100.0 32 ............................. TCATGCACATGAGCGGATTCAGCCGGGATTAT 1038075 29 100.0 32 ............................. TTTGCTGAGAGACTCCAGTTGCGTTTCTGGTG 1038136 29 100.0 32 ............................. AAAAATATTTCAGAAGAAATTTCATTACCTAA 1038197 29 100.0 32 ............................. ATCGGAAAGATTGAGTGTAAACCTCATATTGC 1038258 29 96.6 32 A............................ GTGTGCCGGTACCGTCACCTGTGAGTCTGCCA 1038319 29 100.0 32 ............................. ATACTCACCTTCACCTATGTACTGAGCAAGAA 1038380 29 100.0 32 ............................. CTCCACCTCAGCAGGCCAGACGGTTTCCGGAA 1038441 29 100.0 32 ............................. CGTCCTTAATGGCTGCCATCGTGTCAGGTACA 1038502 29 100.0 32 ............................. GTTTCCGGAAAAGTGTGGATTCGACAGGCTGC 1038563 29 100.0 32 ............................. AATGCTCATCGATGTGGTGCCAGTCACTTAGA 1038624 29 100.0 32 ............................. GCTGCCGGAGAAATAGGGGGCTGGCAGAATGT 1038685 29 100.0 32 ............................. ACCGCGCCAGTCAGGGAAACGTTAAATTACCG 1038746 29 100.0 32 ............................. ATACAACGATTAAACATCCAATTATGCGCTAT 1038807 29 100.0 32 ............................. ACAAAGTTTTACCGCCAGCACATTATCGCCGT 1038868 29 100.0 32 ............................. ATATCCGCTTCCATGTCGATTGCCAGTTGGAC 1038929 29 100.0 32 ............................. AGGCATTCCGCATCCGTAGCATTGTTTCAGGT 1038990 29 100.0 32 ............................. TAAATATGAGTTTCACCCCGCAACTGGAGGCT 1039051 29 100.0 32 ............................. CTGATCCACGTCGCCCGCCGCGAGGCCGGGCT 1039112 29 100.0 32 ............................. GGGTCGGCGTCTGTGAAATCCTGTGGAATACC 1039173 29 100.0 32 ............................. AATTCCGCAACATGCAGGACCACTACAGCGAT 1039234 29 100.0 32 ............................. GAGGTTCCAGTCGAAAAAGTTGTCAGCGACAT 1039295 29 100.0 32 ............................. GACGAATGCCGCGACCGCCGCCGCGATTGCCA 1039356 29 100.0 32 ............................. TTGGTGTACCTGCCCGAATTCAATCGCGCAAT 1039417 29 100.0 32 ............................. GTGATGATTCAGGAAAACAAACTGCCTGTAGT 1039478 29 100.0 32 ............................. GGTTGGTAACAGGTTGGGTTGCGTATTAGAAA 1039539 29 100.0 32 ............................. AGTTGTTTGTCGCGGGATTCAGCCTGGCTGAA 1039600 29 100.0 32 ............................. TGGCGCGCCAATCCGCCTTCGGTGCGTATCAC 1039661 29 96.6 32 ............T................ AATACGCAAAGCTGATTTTGTCGAACAGTGCG 1039722 29 89.7 0 ............T..............GC | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAGGATGTGCTCGCGGCAGGTGAAATTCAACCGCCGTTACCTCCAGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCTTTGGGGGATTCCGGTCATCGGAGTAACTGACGATGAGTATGCTAGTGGTGGTTACCGAAAATGTTCCTCCGCGCCTGCGAGGAAGGCTGGCCGTCTGGCTACTGGAAATTCGGGCTGGTGTGTATGTTGGTGATGTTTCAGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTGCCTGTTGCAAATCAATAAGTTAGAGATCTTTAAAAGTAAGGAAAAGTTGGTGGATTTTTTGTATGCTAAAAACGGCTTTAAATTCAATTGGGTAGATTTAGA # Right flank : CTTTTCACCAGCAGATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGTTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAATGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCTGCGTCGCTCATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2239702-2240036 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029995.1 Salmonella enterica subsp. salamae serovar 56:b:[1,5] strain SA20053897 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2239702 29 100.0 32 ............................. TCCGCTCACTCACCGTTAGTGTTTCTGGCTCC 2239763 29 100.0 33 ............................. TGTAATAGGCTCTATTAGTTCACCAGCTTGGAC 2239825 29 100.0 32 ............................. CTTCAGGAAATCATCAGCAAAGCAATGACCTC 2239886 29 100.0 32 ............................. ATGGCGATAATCAGGATAAACAATCCCCCTTT 2239947 29 100.0 32 ............................. AGAACGGCATGAGCGAGTTCATTATAAATATC 2240008 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 100.0 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : CCTGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGTAAATATCAGATTGTACGTGCGCGTCACTGATTGTGTGCTGATTATCTCAAGCCGCCGTGGGGCTGAGGCGTATTCAGCACTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGGGCTCATCCCGTATCTCACGACCTGCCGCAGACGCTCCCTTGAGCTCTTTGCCGACGATATGCGCAAGATCTTACTCCCTCTTGATGTGATGATGTATTAATCCCCGAATTTTCCGTCATACGACACTCGGCATAGTATGTTGGTAGATTTTAAGAGAGAATCATGGGCGTGGTTTTTTATTATATGAAATCAATTGGTTATATGCTCTTTAATAATGCGGTATTGTTATTTATATGTTGGTAAGATGTTGCTGTGTGAAAATGTTGTTTATAAACATAGGGATGGCACTA # Right flank : GGGATGGGCTGTAACACAAAGCAATATTAAGAAGTGTTCCCCGCGCGAGCGCTGAGTTTGTGGGGTTAGTTCACTCCGGCTGGTTTTTTATGGCTGTTTGCCGGATGGCGGCGTAAATGCCTTATCCGGCACCGATCTTATCTCGGCGTTGCCTATTTTTATAGTGAAGGCATGCCTCAGGATTATCATCAGCTTCTCATCCTTCCCCGTACGGAGAAATATGAGGCAGTATGCTTAACGGGGATAATATATGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCGCTCGAATCGAACCTTAGTCGAAGCTTCTCATCCTTCCCTGTATGGAGAGATATGAGGCAGTGTGCTTAACGGGGATAATATATGCGACGGAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //