Array 1 206092-201593 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPUE01000002.1 Prevotella sp. R6025 sequence02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 206091 36 100.0 30 .................................... GAGCAAATCTGGATTGTTGTCCCTGTTGAT 206025 36 100.0 30 .................................... CCCATTCTTCAGATGGTCAGCCGCACCACT 205959 36 100.0 30 .................................... GAGCTCGGCAGGGGTCGCGGTGGGGTCATA 205893 36 100.0 29 .................................... GTGAAATAATTTTGTGACAACGTTTCATT 205828 36 100.0 29 .................................... TCGAAGTTGCAAGGCACATAGTTCGTTGT 205763 36 100.0 30 .................................... ATATCATCAAATCTACGACGAATACCGCTA 205697 36 100.0 30 .................................... GCGATACCAATCTTGATAAATCTTGTTATA 205631 36 100.0 30 .................................... TTACTATATTTTTCTGTATTCATAATCGAA 205565 36 100.0 30 .................................... TCACGAATTGGTCCCAATTGTGCCAGAGCT 205499 36 100.0 29 .................................... TGCGGAATAATGTTATCGAAAACCTTTTG 205434 36 100.0 30 .................................... ATTATTAATCTTGTCGAACTCGGCTTTGAG 205368 36 100.0 30 .................................... TGTGGTATTCGTCGTAGATTCGATGACATC 205302 36 100.0 30 .................................... GATGAGACTTTACCGTACTGAGAGAACTTA 205236 36 100.0 29 .................................... TTCCTTACATACTTACGCTCCGCCCATGG 205171 36 100.0 29 .................................... TAATAATGGAGCGTATCACCGTGCAGGCG 205106 36 100.0 30 .................................... AATTTTTTCGAAAGACTCCTTAAAGACAGA 205040 36 100.0 29 .................................... ATCCAAAAGTACCATGGGGTGTGGAGTGA 204975 36 100.0 30 .................................... ACCAACACAGAACTTATCATCCAATCCTTT 204909 36 100.0 30 .................................... TACTCGCCCGACACGATGCCACGCGAACAG 204843 36 100.0 30 .................................... CATCCACAACTCCGAGGGCGGCATCTTCAC 204777 36 100.0 30 .................................... TGACAAGACGGGGACGTTTTAAGCCGATGC 204711 36 100.0 30 .................................... AAAATCCGAAGCCAGCCGGCAGCATAAGAA 204645 36 100.0 29 .................................... ATAAGATGGAGCGATTCCGCCTCATGTCG 204580 36 100.0 30 .................................... TTCATGCTCGGTCAGATCAACGACGCGCGC 204514 36 100.0 30 .................................... GTGTTTCTGAATTTTCTGAATCGTGTTTTC 204448 36 100.0 30 .................................... GGCAGAGCACAAGGACTACGGCACACTCAA 204382 36 100.0 29 .................................... TGCGGGATTCACTAAGCGGCTCGTGTTCA 204317 36 100.0 30 .................................... TAAAACTAAAAACTATTCACTGTCCTCACG 204251 36 100.0 29 .................................... CGAGTGCGGCTACATCTACAAAGGCAGCA 204186 36 100.0 29 .................................... TCTGTGATCTGAAAGACCACCAATCCATG 204121 36 100.0 30 .................................... CGCTCCTCACGGCGGGATGTGCGGAATTGC 204055 36 100.0 30 .................................... AGAGCAGACCGTTTTGGAACGCCACGGACG 203989 36 100.0 30 .................................... TGCAATCAGACTCTCACGTGTGTAATGGTA 203923 36 100.0 29 .................................... GGACAGTGAATAGGTTTTTAGTTTTATAA 203858 36 100.0 30 .................................... GTTTGCCAAGCTATTAGGCGTCAGTCCTCA 203792 36 100.0 30 .................................... TGGAGACACTTATGCTGACAACGGATATAG 203726 36 100.0 29 .................................... TCCCAGGAATATCGTACCGTCACAGGCAA 203661 36 100.0 30 .................................... TGCAAATTGGGATTATGTGAATATGATACA 203595 36 100.0 29 .................................... ACGGCATGGTTTAGGGCCAACAGCGTAAA 203530 36 100.0 29 .................................... TTAATATCTTCTCGCAACGTAGCGTTTGT 203465 36 100.0 29 .................................... CGTTTACAAAGTTATCAACGTCTTGCAAA 203400 36 100.0 29 .................................... AACTCAAAAGATTATATAAGGCTTGAGTT 203335 36 100.0 30 .................................... CAATCCTTACAGATGGAAGGTTTCGAAATG 203269 36 100.0 29 .................................... ATGACGTGCCCGACCTGCCGGAGCTAAGA 203204 36 100.0 30 .................................... GATATAGCCGCATTCGTGACCAAGGACAAA 203138 36 100.0 29 .................................... CCCAATCACCATTAATGATGCCACCATTC 203073 36 100.0 30 .................................... TGGTCAAAGGAACTATACGAGCTATGCAGC 203007 36 100.0 30 .................................... TGACCGAAATAGAAGAAGGAAATATGAAGC 202941 36 100.0 29 .................................... ATTACTTTATCCGTAATTTCCATCATCTT 202876 36 100.0 30 .................................... CCCGGATAGCCGACAAGCTGCTGACAGCAG 202810 36 100.0 30 .................................... GTGACGCGTGCCTGGGCACCGCAGGCGATG 202744 36 100.0 30 .................................... TCTGGCGATTGTAACTCCATTGTACTTAGC 202678 36 100.0 29 .................................... TTGTTATAGAACGGCATAGTCGACTGTGT 202613 36 100.0 30 .................................... TCATCAATGCCGGTGGCATCGACAAATATG 202547 36 100.0 29 .................................... AGGTCGAAGAATTCCTGCTGCTGGTCACC 202482 36 100.0 29 .................................... CCTTGCTGTAGCTTATAAAAAGCTTCAGC 202417 36 100.0 30 .................................... TTTGCGACCGACGAAACCACCTATGAGAGC 202351 36 100.0 30 .................................... TTCACCTGTCTTCGGGTCGATGTACGGGGC 202285 36 100.0 30 .................................... CTTAGGGCAGGACTACTGGAGCAGATGCAG 202219 36 100.0 29 .................................... TAGTACATCACGGTATCGCCTGACAAATG 202154 36 100.0 30 .................................... CCTACATGCATCAGATATAATCCCCATACT 202088 36 100.0 30 .................................... GAAGTGCGCACTCAGAAAGCACTCACGCAA 202022 36 100.0 29 .................................... GTACTTGGCGGCGAGCTCGCCGATATTGT 201957 36 100.0 30 .................................... GCCAGTGGCTAAGTATGTGCCTTTCCATGC 201891 36 100.0 29 .................................... AGCTCACCGCATTCAAATTCCGTTAAAAA 201826 36 100.0 30 .................................... TAAACCCCCGCAATCACTGCGAGGGTCTAC 201760 36 100.0 30 .................................... CTCTGTTTATTTAGGTTTGACTGAGCTCCT 201694 36 100.0 30 .................................... TTAGCCTGTTCAATATCGTAGCTCCCCGGC 201628 36 94.4 0 A...................C............... | ========== ====== ====== ====== ==================================== ============================== ================== 69 36 99.9 30 GTTGCGGTTTGATGTAGGAATAGAACGATATACAAC # Left flank : CAAATTCTATAAAGGTGAAACAAAAAAGCTTTCATTGCCAGTTCTTATATGACTTTTAACCGACTTAATGCATATCATATCATGTGGCTGTTCGTATTCTTCGACTTGCCTGTGACTACAAAGAAAGAACGCCATGACGCAGCACTCTTTCGTAAGAACCTGGAGAAAGATGGCTTCTCCATGATGCAATTCTCTGTTTATATCAGGCATTGCGGTTCCTATGAGAGTATGGATGTTCACGTCAAAAGGGTAAAAAGCCTTATACCAAAGTATGGGGCCGTAAGTATTCTCTCGGTTACAGACAAGCAATACAGTAATATATATAACTTCCGTGGAGTACCTAAAAATCAGAAACTAAAAAAAGAAATAAAACATATCAGCGAACCGATACAATTAGAACTTTTTTAGTATCTTTGCACTGGAAATAGACCTACACTTCCGTTTTTTTATCTCTCCAATGGCCTTGAATCTCTTTATTTAAGGGCAATTTAGAGAATAAG # Right flank : AACCAGGACAGCAAAAATGGCAACGATGATTCATCATCGCCTATTAACGCCCATCGACGCCCATCCGAGCCCCAAAACCGCCCTTCAAACGCTGCTCAAACAACCTTCAAATCCCGCTTGAAGCGTTTTTTCGGAGTAGCCCCGAAAGGGGCCGACACCGACTTCTGATTGACTCCCTCTACTACGGCGCCTCCTGCCCCTGCTGTAGCACGTCCCGTTCGCCGCAATACATTGCGGCGCCCTATATCGCCAACGCCGCGTCAGCGGCCATCTCCATCAACGCCGACGTCCTCGCTTCCTTCCTCCGTAAAATCTACGATGGCTTCGACACCTCCCATGAAATAGAGCCCTCCATTTGGCGCGAGGTCCTCCGCGTCATCAACTCCGCCACCGTCGAGGGGCTCACCCAGGCCGGCAACCGCTCACTCTCCGACGAATTTCTCTCTGCGCTTCGCCACTCCAACGAAGTATTCTCTGCTTTCAAGGTCCACCAGATGGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGTTTGATGTAGGAATAGAACGATATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 248712-249869 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPUE01000002.1 Prevotella sp. R6025 sequence02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 248712 32 100.0 34 ................................ ATCGTCAGTGGTCTCTCCCTCGATACTGAATCGA 248778 32 100.0 35 ................................ TTCTTAAAAAGCTGAACGTCGGAGTAGAAAAGAAC 248845 32 100.0 34 ................................ TGTCATGAATACCTTTTCGCCTCGTTTCAATCGG 248911 32 100.0 33 ................................ GCCAGTCTTCGGGTCGATGTACGGAGCAGCCCA 248976 32 100.0 36 ................................ ATCAAGACTACACAGCGTTATAACGACAAGCTCCAA 249044 32 100.0 35 ................................ TAAAAGTTTAGATGACCTTCAGCAGAAAATCGATT 249111 32 100.0 35 ................................ ATTAAATTTTCACACATTATGCAAATCTTGACATC 249178 32 100.0 37 ................................ AGCGATGCGCGCGACGGGCAGCGTGGGCTCCATCGTC 249247 32 100.0 35 ................................ TATGATTCTCAAGTGTACCGTGACTCTGATGGTAA 249314 32 100.0 33 ................................ TCGCGCAGACGCGAGTACTCGGAGTTTATCACG 249379 32 100.0 35 ................................ TCAGATACAATACGTCAAGGCTAACGCTCGCAAAA 249446 32 100.0 33 ................................ TCAGCGAGGTATTGGGGCGTGATGTAGGTAGTA 249511 32 100.0 34 ................................ ATTTACAAGGCGACACTCTGATGTACTATCGTGT 249577 32 100.0 32 ................................ AAAAATTCTATTTATTTTTGCAGCAGATTTAA 249641 32 100.0 33 ................................ TTTTAGTCAGCTGAAACCTGTCAGTGATAAATG 249706 32 100.0 34 ................................ CTCAATTCACTCGGGCAGCCTAATCTCGGCCTCC 249772 32 100.0 34 ................................ AAAGGTACTGACGGCCTTTTGCACATGCAGCCCA 249838 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 18 32 100.0 34 GTCGCGCCCCACGTGGGCGCGTGGATTGAAAC # Left flank : ATATGTTCGTACTGGTTACTTATGATGTGAATATCACATCGCCTTTAGGACAAAACCGACTCAGACAGGTTGCTAAAACATGTCTTAACTACGGAAAGCGCGTTCAAAATTCTGTATTCGAATGCGTCCTGACTGAAGCTCAATTTGTACTGCTAAAGGATAAGCTGTCTGAAATAATAAGTCAATCGGATGACAGCATTTGTTTCTATAAATTAGGTAACAATTGGAAAAGACATGTAGAAAGAATCGGCAAGGACACGTCAGTCGATGTGACTGACGTCTTAATATTATAATGCACTTCACCCATACTTACTCTCAGAATGATTTCGTTTATGCGAACCCTAACCGTTGCACTAAAAGCAGGAATTTTCGCAGAGACTAATACACAGGCAGTTAAGCTTTTTGAAAGGACAATATGCATTTAAATAGCTATGCTTTTCGCCATGTTCGCAAAATATAGTAACTTTGCCTCTGATTATTAGGCAATTGTCTAATAAGCG # Right flank : CGATTTATCTTTGCAGCAAACTTTTAGAGGTCTTTAAAACAAAGGCACGATATAACTGGGGGATGCGTTCTTCGAACGCATTTGAAAAAGCGCTCAAACATTACGATTTTCACTAAAAAGTGATTAGCTTTGTTGCGCCAGACAAGCTAAAGCCAGTTTCTTAGTAGGGCTCAGACCCTAATTTGCAGCGTGGCTCCGTCTCCTAGTAGACAAACGATTGTGCCGTAGGAGGCCTTATAGAAGAATACTTCTGTCCAGAGGAGTCGGGTCTGGCAATGTTTTACAACAAAAGCCAATCACGATGACAAAGGTAAGAAGAAAAAATGGAATCGGCAAGGATCGCGAGTTCAAAGTTGTCCATCTTAACGCTGCAGGTGTAGATGTATCCCCAAAGGAAATGCAGGTGTGTGTTCCAAGCGACCGCGACGAGAAGTGCAACCGCACGTTCGGTGTGTACACGAAAGACCTGCATGAAATATCCGCATGGCTGAAGAAGTGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 251586-253000 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPUE01000002.1 Prevotella sp. R6025 sequence02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 251586 32 100.0 35 ................................ AATGCGACACTGAATAAGTCGCTTGACAAGGTCCT 251653 32 100.0 33 ................................ ATAACGGTTAGATTAGAGGAAGAGAATCGACAT 251718 32 100.0 34 ................................ TTATCGATACTGCCCTACAAAACGGTAATATTAC 251784 32 100.0 33 ................................ CTATTCTAATCTTCCTTACATACTTACGCTCCG 251849 32 100.0 33 ................................ TAACTGCCGCCACTGGCCTCGTTGGCGGTTTAA 251914 32 100.0 33 ................................ CGAGTAGAGCCTTACATTCCGCCGCCACTACAG 251979 32 100.0 35 ................................ GGGGTATTCGTATCTGATACGAGCAGCCTCGTTGT 252046 32 100.0 34 ................................ CGTCGCTTCAGGAACTATCGGCAGTACGTCTGCT 252112 32 100.0 33 ................................ CTCAAGTACTACTATAGGTTAGGTGTGATTCGT 252177 32 100.0 33 ................................ GACAAGATTAACAATGAGGCCGATGTCGCAGCG 252242 32 100.0 33 ................................ AATGCGACATTGAATAAGTCGCTTGATAAGATT 252307 32 100.0 34 ................................ TTTTGGATTGAAGACGAAAGATATTGCTTAGTGA 252373 32 100.0 33 ................................ TTGGCTATTGTCCTTTTCTCGACTCTACTGGTA 252438 32 100.0 34 ................................ CCTTGATAAGGACGATTATATAATTGAAATATTT 252504 32 100.0 35 ................................ TTAAAAGAATTCAAAATCAGTCATTGGATGGAATG 252571 32 100.0 33 ................................ ATATTAAGCGTGCATGTCTAATCTATCGTGAAT 252636 32 100.0 35 ................................ GTCGTACCTGTTGAAGTCCTCGTCGCAGTCCTTGT 252703 32 100.0 34 ................................ CATAGCGTCCTTACAACGCTCGCACAAATCCATT 252769 32 100.0 34 ................................ ATCTGAGTAATAAACTGGTCCCAGTTGTGCCAAA 252835 32 100.0 35 ................................ ATCACGATGAGGGACACTACGACGAACACAACGAA 252902 32 100.0 35 ................................ TTTTCCGCAAAGATAGTCTATATCATGTGTTGTGA 252969 32 93.8 0 ....................A........G.. | ========== ====== ====== ====== ================================ =================================== ================== 22 32 99.7 34 GTCGCGCCCCACGTGGGCGCGTGGATTGAAAC # Left flank : GGATGAGTAAGAACTCCGCACTTCGGCTGCTTGCGGAACTTGGGCCGGACTTCGTGGAGAAATTTCCTGACGCAAGGCACTTCGAAAGTTGGGCGAATCTGGTGCCGAACAATAAAATCTCCGGTGGGAAGCTGCTTTCGAGCAAAGTCCCCAACAAGAACAATCCTGTGGGACAGGTGTTCAGACAGTGCGCCAATGCGCTATGGAGATCAAACGAACCGTTGGGAGATTACTTCCGCCACATCAAGGCAAGAAGCGGCCATTTACAGGCAATGGTTGCTACAGGCAAGAAAATGGCGGGAATCTTCTATACGATGGTCAAAAACAAAAAAGAATATGATGTGTCAATATATGCCAAAAGCAAGGAGAAAACTCTTGAAAGAAGAATTAAAAAGCTTCAAGCAAAGATTCTTCGCCTACAGAATGAGCAAGCTCAATCTGGGCTCAAGGTAACGGATGGCACTGATTAGTTATATAGAAGCACATAATAAAATAATTGT # Right flank : CCACCTACACTCAGATTCTTGAAAGATAGAAGATTTTGTATGTGCGTGCAGAATACTATAGGAATCCCTCGCACAAGCCTCAAGGCTGCAAGGAACAGGCAAATCCTTTGCGGAATCTTTGCGACCTTTGCGACTTGGCGAGATTTTTTCGGAGCAAGAGGATGGGGATATAACAAATCTTTGCAACCTTTGCGACTTGGCGAGGGTTATTCGTGGTAAGGGGATGGGGATAGAACAAATCTTTTACGGCCTTTGCGACTTGGCGAGGGTTATTCGTGGTAAGGGGATGGGGATAGAACAAATCTTTTACGGCCTTTGCGACTTGGCGGGATTTTTCGTGGTAAGGGAATGGGGATAGAACGAATCTTTGCGACCTCTGCGACTTGGCGGGATTTTTCGAGGCAAGGGGATGAGGATAGAACAAATCTTAGCGAGCGTGGAGCTTGGCGAGGGGGCTTTCGTGGCTGGAGGACGGTGATAGACGCAGTGAAAGGGTATTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //