Array 1 1143364-1142206 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP013689.1 Streptococcus infantarius strain ICDDRB-NRC-S5 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
   1143363	    36	 100.0	    30	....................................	TGGTGGTAAAGATCGTTTGACTACTGAAGA 	
   1143297	    36	 100.0	    30	....................................	TTAAGAAGCTAGAAGCTGAAACATTGAATG 	
   1143231	    36	 100.0	    30	....................................	AAATATAACAAAATTCTATGCGTTTAATCA 	
   1143165	    36	 100.0	    30	....................................	AATCAATTGTTGACTTTGTTAACGAACTTG 	
   1143099	    36	 100.0	    29	....................................	CTATCAATCTTTCAGCAGAAACATTTGAA  	
   1143034	    36	 100.0	    30	....................................	TCACCAAGTGACGAATCTAATCCATACACA 	
   1142968	    36	 100.0	    31	....................................	ACCTTATTGCTAAACAAATTTTGAAGAGACA	
   1142901	    36	 100.0	    29	....................................	TACAAGTGAGCGACAAGTTCGAATGTATA  	
   1142836	    36	 100.0	    30	....................................	TGAAGTGCCACATTATTTCATTGAAATACA 	
   1142770	    36	 100.0	    30	....................................	TAAAGAATAAATTTAGCGAGGTAGTGAGTG 	
   1142704	    36	 100.0	    30	....................................	AGCTAGTCCTTTTTTATGGCTGTTATAACC 	
   1142638	    36	 100.0	    31	....................................	AAGCTACTAAAGTTTCAGGTGGGGCAGAAAA	
   1142571	    36	 100.0	    30	....................................	ACTGGAAACAACAATCAGGCGAGGATATGT 	
   1142505	    36	 100.0	    31	....................................	AAGCTACTAAAGTTTCAGGTGGGGCAGAAAA	
   1142438	    36	 100.0	    30	....................................	TTTAATCAGCGAATTAATTTCTGGGAAAGG 	
   1142372	    36	 100.0	    30	....................................	CGGTAACACATTTATTCGAACAACTAGCGC 	
   1142306	    36	 100.0	    31	....................................	GCAGATTCTTTGGCTTTTGCCCTTATTTTGT	
   1142239	    34	  83.3	     0	......................CAAC...--.....	|                              	
==========	======	======	======	====================================	===============================	==================
        18	    36	  99.1	    30	GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC	                               	       

# Left flank :   ATGGATGATTACCTTGATTATGCCTCATTTATAAGAATTTGTCAGGTTATCACAAGAATGGCTGATGAGTTTCCAAATTTTTATTGTACGATTTTTCCGTCAAACGAGAGCTACTTGTATGTGACTAAAGAAACAATAGAAAATATTACCATTGTTTCAGATTATATTGAATCTTTGTTTGATCTTGATTTTATGTATGAAAGGTTTGTTGGAAGATATCCATCCAACAATGTACCAACAAAAAAAGAATTTTTAATTCTTTTACAGAAGAATGCAAGTTATTTATTTAGTGAGCAAATTTCATATGTGAGTTTAGGAATTTCGGATATGGTAGCTATCAAGATACTAAATAGTTTATATCACTATGATAAGTCAGTTAAATATCCAATTTCAGAGATAAATCAGCTTGAAATAAGCTTTCTTAAGGATAAAGATTGACTTTTAGGCTCAATGAAATTATAATTCTTGTAGAGTATAAAGACCCAAAATGACGATTTGAG
# Right flank :  CCCACCTAGTTCGTCACTGGGTGGGGTAATCTATGTGGGTCATAGGTTTGCAGAATTGAGTTTTTATTACCTTTGATTAATGATAACGCTTTCTGCAAAAATTGTAAAATGATTTGCGGTAGCTGATTTTAGCGATATTTATCGTGCCTAGAAAACTTTTTATAGCACCAGTGGTGTTTATTTGTTATAATAGAAATAATGAATAATTGTATAGGATTATAGATAGATGGATATTCAAGAATTAAAAAAACGACAAGAAAAGATTCGCAATTTCTCAATTATTGCGCATATTGACCACGGAAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAAACTGTCTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGTATGGATTTGGAACGTGAACGTGGTATCACAATCAAATTGAATGCGATTGAGTTGAATTACACAGCTAAAGATGGTGAAACTTACATTTTCCACTTGATTGACACACCAGGGCACGTTG

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         R [matched GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [5-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.18   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
//