Array 1 700579-702765 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXGQ010000002.1 Saccharothrix sp. SC076 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================== ================== 700579 28 100.0 46 ............................ CGAACAGGACGCCTCCGCACAGGACCCGTCGCAGACCGGCGAGGAG 700653 28 100.0 32 ............................ TGCGCCGCCGCGCCCGCGCCGAAGCCGACCGG 700713 28 100.0 32 ............................ ACCGACGGCGAGTTCTTCGACGGCACGCAGTT 700773 28 96.4 33 ...........................A CTCGCGCTCGTGCACGCCATCGGTGAGCATCCT 700834 28 100.0 32 ............................ TGCTCCACCCGCAACGCCGGCGGCGCGAGCGG 700894 28 96.4 32 ...........................G GCGACCGCCGAGGCCAACGAGGGCAACATCAA 700954 28 100.0 32 ............................ CTGGAGACCAAGATCCGATGAGCACTTCGACT 701014 28 96.4 32 ...........................T GCCTCCAGGTCGGCCACCGACTCGTTCGCGGC 701074 28 100.0 32 ............................ GTGTAGGCACCGGGCCCCACGTGCGTGGCGGA 701134 28 96.4 32 ...........................G AAGTACACCGACACCGCGGTCGGCACGCTCGA 701194 28 100.0 32 ............................ AGCGCCCAGTCCTCTGCGGACCAGGCGTAGCG 701254 28 100.0 32 ............................ TCCGCGATGAGTTCCAGCAGGTTGGCGACGCT 701314 28 100.0 32 ............................ CTGCACGTCGACCGCGGTCTCGGTGGTGTCGA 701374 28 96.4 32 ...........................T TTCCTTCTTCGTCGCTTCCGAGATTTCCATCT 701434 28 100.0 32 ............................ CGCACGCGCCACAGGGCGACGTTCGACGCGAT 701494 28 100.0 32 ............................ AGGTCCGTGATCACGGACCACACCGCGGTGTG 701554 28 100.0 32 ............................ ACTCCATCCGCTCCGACGGCTACACCCAGCCC 701614 28 96.4 32 ...........................G TCGCCCCGGCGGGAGAACAAGGCCGCGAGCTA 701674 28 100.0 32 ............................ GTGCACTGCTCGACCTTGATGCGGTTGAGGTC 701734 28 100.0 32 ............................ GTGCCCACGTGCACCGCGTTCCCGAGGCGCGT 701794 28 100.0 32 ............................ TCGATCGCCCACACGTTGCCGTCGCCGTCCGC 701854 28 100.0 32 ............................ TGATCAGCTCTGCGGCCCTCTCCCGGTCCTGC 701914 28 100.0 32 ............................ GCGTAGTAGCGGGAGTGGGCCGAGGTGTTCCG 701974 28 96.4 32 ...........................G GCGGCGCGGGCGCTGTTCGCGGACACCGTGTT 702034 28 100.0 32 ............................ TCGATGTGGAGCCCACGGGCGTTCGCGGTAGG 702094 28 96.4 32 ...........................G CAGTCGGCAGCGATGGCGCGCTCGGAGTCGAT 702154 28 100.0 32 ............................ TCCCACGTCTTGGCCTCGACCACGCCGCCGAC 702214 28 100.0 32 ............................ TCGCCGTGGCAGCACCCCACCGACACGCGGGT 702274 27 96.4 32 .....-...................... TCGTCGCGTCATCGATCTTCACTTCGATCGCC 702333 28 96.4 32 ...........................G GGCGTCGTAGTGGTGATGCCTTGGTCTTCCCC 702393 28 100.0 32 ............................ GTGGCGTGGTCGCCGTCGACCACCAGGGCGCT 702453 28 100.0 32 ............................ TTCGCCGCGCCGATGAGCAGTAGCGTCTCCGC 702513 28 96.4 32 ...........................G ATGCCAGTGGGGTGGGTCGGTTCGGGTGCCTC 702573 28 89.3 14 ......................T..C.T TCACGTCTTCGAGG CG [702593] Deletion [702615] 702617 28 96.4 32 ...........C................ ATCTCGTCCGCGGACAGGCCCAGCGACTCGTA 702677 28 92.9 33 ..................A........A CTGGAGCGCAAGCTGGGCCGGTCCACCGGCCAG 702738 28 96.4 0 ..................A......... | ========== ====== ====== ====== ============================ ============================================== ================== 37 28 98.3 32 GTTCTCCCCGCGCAGCGGGGGTGGGTCC # Left flank : ACAGCCGTCGGGACGACAGGATTTGAACCTGCGACCCCTTGACCCGGTCGCCCAGATCATGTCCTGACCTGCGGAAACAGCGAGTTCGCCCTCGATTAAGGAGCAGTTGAGAGCACTTGTTGCTTGGACATGTCGGCAGCGGGCAGCACGCACCTCCCTCCTGCACCTCGACCGAGCAAGGCCGGCCCGTTCCGAGGCACCCGCATGGTGGCTGACAGGTGAACTGCAACCCGCCCACTCCTAGCGACTGATCTCGGGGCGAGAGCCCCGGCGCGCGTCCGAGGGGTGACGACGACCGTCAAGCCTGGGCTTGTGTCCGGGATGCGGACGGCTGAACAATCAGCGGGACAAGGTGTGTACGCCTACGAACGCGGCGTGGCCGCAACCGTCGGGATCCGACCATGGCAGGGCAACCGAGATGCGGGGGCACCGTCTTCCAGGACACCATCCGGGAACATCACGAAACGGTAACCCCTGTGCATCGTCGCTGTTCAGGAAGT # Right flank : CCGCGAGCTTCAACCACTGGCTCGGTGGAAACCCGCCCCCGTTAAGTCCTGCCTACCGTGAAGTCGCTGGTGGGTCGCTCTCGTCGTCTGGGTTGCCGTTCCCCGCTGGCTTCGCTGTAAGCGAAGCCAGCGGGCCCTCGCTAGGAGCTCACCCGCGGCCAGGTATACGGACCGTAGCCGGAGGTTGCGCTGTCGCGAGGAGCGCGGCACGTCGACCGGGTTCTCAAGCACCCAGATGACTCACCCTCGCCGAGGCGAGGAGCAGTTGGACTCATCCGGAGTCCGGTTGCCCAGTGCCGCCGCGTCACCGTCACTCGGTGGTGCCGCTGACAAGGGCAAACCTTAGCCGGCACCTCGCTGTGCCGCAGGCCACAGCGGCCTGGTAGGGTCCTTCTCTTCGATTCTGAAGTCTGGTTGCTTAAGGAGGAACGTGAGGATCGACGCTCCATGGGCTAAGGACAAGGACCTTGATCCTCGGTATCCCCTGGTTCATCACCTGC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCAGCGGGGGTGGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 711913-713320 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXGQ010000002.1 Saccharothrix sp. SC076 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================= ================== 711913 28 100.0 32 ............................ GTCCAGCCCGGTGCGCAGGGCGTCGAGCCGAG 711973 28 96.4 32 ...........................G ATCGTCGAGCGGCTCGGCGCCGCCGAGGTCGG 712033 28 100.0 32 ............................ ATGGCGTCCTACACCTACAGCCTCTCCGCTCC 712093 28 96.4 32 ...........................T TGGAGCCGGAACGGCCCCGCGGCGCGCGGTCC 712153 28 96.4 32 ...........................G ACCTACCCCGACCAGGTCGAGGAGGTCGAAGA 712213 28 100.0 32 ............................ TACGCGATGGCCGCCGACCTGTTCGCGGGGCT 712273 28 100.0 32 ............................ CAGAGGTTCCACGCCGTCCGCTTGGCCGGGTC 712333 28 96.4 32 ...........................G TCAGTGGTGGATGCGGAGGCGCGCGGTGCCCC 712393 28 100.0 32 ............................ CCTGGGTGGGTGCGGGAGTAGCCGACGTCGGC 712453 28 100.0 32 ............................ ACCAGGCCCGCGGCGTATGCGGACGTGGAACT 712513 28 100.0 32 ............................ TCTGGGTCTTGGACAAGGTTCCCGACCACCGT 712573 28 96.4 32 ......................C..... CATCCCCGGCTCGGCAAGCCGCTGTCGGACCG 712633 28 100.0 31 ............................ TCGGCTCCGCCTTGGGATAGGGGGTGATGTG 712692 28 89.3 32 ........T................G.G GTCTCGTAGCTGGCGAGGTCGCCGCAGCGGAG 712752 28 96.4 89 ...........................T TCTCCGACGCTGTGGCGACCCGCTCCTGCTCGGTTCTCCTCGCAGCGGGGTGGGTCGATCCCCGCGTTCACCTTCCGTGTTCGCGCCGC 712869 28 96.4 32 ......G..................... CTGGACGCGAGCCTGCACCACCTGGAGATCCA 712929 28 92.9 32 ...........A..........A..... GTGGTCAGCTCATCCGGGGTGATCGGGCCGTC 712989 28 96.4 32 .......................C.... CTGATGCTGAGCCCCCTGGGTAAAGCGATCAT 713049 28 96.4 32 ...........................G TCACCAGCGCGGCACGGGGTCCGAGGTGACCA 713109 28 92.9 93 ...................A..C..... GTGCTCCTGCCCATCGAACCACGCGAGGTGCTGGCCCCCCGCCCCCCGCGCAGCAGCGCGGTAGATCGCTGCTGCTGCTCTCCGGCGGCGGGG 713230 28 85.7 32 AA...............A.....A.... TCCAGACACCCACCGCGGACGTTGCGGATCGG G,T,A [713232,713238,713247] 713293 28 89.3 0 .....T...........C........T. | ========== ====== ====== ====== ============================ ============================================================================================= ================== 22 28 96.3 38 GTTCTCCCCGCGCAGCGGGGGTGGGTCC # Left flank : CGACATCCACTACATCCTCGACGACAACGACCAACCCCCACCCACGGACCACCCCGCCACCGGCGTCGTCGACCTCTGGGACCCGGACGGCAACGTCCCCGCCGGCGTCAACTACGGCACCCACGACACACCGGACCCGGGCTTCTGATGGCACACTTCGCCGTCATCACCACCAGCGGCATCCCCGACGGAACCCGCGGCGCCATCACCCGCTGGATGATCGAACCCGCACCCGGCGTCTACGTCGGCACACTCACCACCAGAGTCCGCACCTACCTCTGGACAGCCGTCAAAGACAGCATCGACCAACAAACCGGATGGGCCGCGATCGTCTACAACGCACCCACCGAACAGGGCTACCAGGTCGAAACACACGGACAACGCCACATCGAACGAACACTCACCAACCTCGACGGACTCACCCTCGTCGCCTGGCCCCGCAACACCACCAGCAACACAACAGAATGGTAACGCCACCACATCAGCCCAGGTCAGCAAGA # Right flank : CGTCCGGCGGTTCCCTGAGCCATCCCGCTGAATGCTGTGCGTGCTGGTGATCCGGTCCGGAGGCGAGCGGCGAGAATTCAACTGGTTCGGAGCGGGCCAACGACGTGTAGCTCTGGACCGTCCGCGTCAACTCCGACTCCTTCGCCGAAGCGGTCTTCGCCATGACGGTCGCCATGATCACGGCCGGTCGGGTATCGCGCTGGCCGGTGACATCCGGTTGAAACCGTCACGTCTTCAGGCTTGTCGGACTGCGGGCGGTCTGTCGGTGTCACCGGTCGCGCTGCCCAGTGCGCGTCGTAGTCCCGACCGTGCCCGGTAGGCCAGTGCCGAGATGGCGTTGGGGCTGGCTCCCAGGCGGGGTGCGATGTCGGCGGGGCGCTGGCCCTCGATGTCGATCAGCCACAGAATCGCCCTCCAGCGTGCGGGCAGTTCCGCGAAGCTCTTTGCGAGACGGGCATGTTCGTCGGCGACTGCCTGGGCGTTCTCGGGGCTGGGGGTGT # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.42, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCAGCGGGGGTGGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 744614-745541 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXGQ010000002.1 Saccharothrix sp. SC076 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 744614 28 100.0 32 ............................ ACCGCGCTGTTCAACGGCCTCCAGCAGGCCAA 744674 28 100.0 32 ............................ TCGCCCATCCCCGCTTCCGCGGCGAGTACATC 744734 28 96.4 32 ...........................G ATGATCAAAGAGGCCAGGGAGGCCCGAGGGCT 744794 28 100.0 32 ............................ AGCGCGCCGCCGAGGTCGCCGACTACGAGGCC 744854 28 96.4 32 ...........................G GCAGGTGCCTGATGCCGCACCGCCACGAACTC 744914 28 100.0 32 ............................ TATGTTGACCGCCGGGCCTGCCAGGCTCCCAG 744974 28 100.0 32 ............................ CTCGTAGACGAGCTGGTAGCGCTCGCCGGTCA 745034 28 100.0 32 ............................ CCGTACGGCGACCGCGGGGTGCTGCGCAAGGA 745094 28 100.0 32 ............................ AGGGCGAGCTGGTTCGGGTCGACCTCGGCCTG 745154 28 100.0 32 ............................ CTCACCAACGCGGAGCTGAACAGCGCGAACCT 745214 28 100.0 32 ............................ TACAGCGGCACTGGCGGCGAGCTGAAGGGTGT 745274 28 100.0 32 ............................ GCGCGTTGCATCGCGCCGACGCTCGGAAGGCC 745334 28 96.4 32 ...........................G ACTCATGGCTCTATCTCCTGATGTGGTCATGG 745394 28 92.9 32 ................A..........G CTGGAGGTGGCGGCATGAGCCAGGTACCCGAC 745454 28 92.9 32 ..........T...A............. TCCGGAGAGGTGGGCGGCCGATGCGGTGTAGT 745514 28 89.3 0 ...........A.........C.A.... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 97.8 32 GGTCTCCCCGCGCAGCGGGGGTGGGTCC # Left flank : GGCGACGATGTGCGCGCGAACGTGGTCGATGAGCGCTTCGGGAAGTTGGATGTTGATCGAGCGGTTGAGCTCGTCGCGCTCGCGCATGGACTCCTCGACACCGACGTCGGTCAGGTCGATGGGGGCATAGTCGAGCAGTTGGTCGGCGTAGCGGCCGACGACCAAGCGGCGGTGCCAGTCCGGTGTGCCGGGATAGGGCCGGTGTTCGGAGGCCGAGGCGCGGAACCGTCCGGGTAACGAGGTCAGTGAGGCCACGATTCCGGTGCTCGTACGAGGGCGACGGTAACCGGACGCCGAACCTGGACTTGTGTCCGGGATGCGGACGGCTGAAGAATCGGCGCGACGAGACATGTGCAGATAGCTACGAACGCGGAGTGGCCGCAACCGTCAGGCACCGACCATGGCAGGGCGGCCGAGATGCGGAGGCCACCATTCCACAGGGCGCCACTCAGCAACATCACGAAACGGTAACCCGCTCGTATCGTGCCTGTTCAGAAAGT # Right flank : CTCGCTGTCACCCTGCACGACAGTCTGGACCGCTTGGCGCACGGAAGTTGACGCGCGCCTCGTTCAGCAACAGGATGCTCGGCGCGCGAGGCGATCAGGTTGTGGGGGGGCGATCTTCGTCGGAGCACAATTCCCGCATTACCACCAGGCAACCCTCGTCGTCCGGTATCCAACGTCGCCGCGATCGCCGTAGGGGCCCGCCACGCAAGGTCCGGTTCAGCACGTGCACTTGGTCAAACCTGGACTTGTGTCCGGGATGCGGACGGCTGAACAATCAGCACGACGAGACATTCGCAGCTACGAACGCGGCGCAGCCGCGGCCCCGCCGGGCGCACCAAACCATGGCAGAACAGCCGAGATACGGAGTCCGCCGTCTTCGAGGACACACCATCCAGCAACATCACGGAACGGTAACCGGTCCGTATCGTGCCTGTTCAGGGAGCGTTCTCCCCGCGCAGCGGGGGTGGTCCGGTGCGGGGGTCGTCGGGTTCGGTGAGGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCTCCCCGCGCAGCGGGGGTGGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 745984-747565 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXGQ010000002.1 Saccharothrix sp. SC076 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 745984 28 96.4 32 ...........................G GTGCGGGGGTCGTCGGGTTCGGTGAGGGCGGG 746044 28 100.0 32 ............................ GTCCATCAGGTGGCCCAGGCGGTCGACCCCGA 746104 28 100.0 32 ............................ GACGTCAAGAAGGTCAAGGCGACCGCCGAGGC 746164 28 96.4 32 ...........................G TCGACCTCTACACAGTCAGCCCCGGTGCCGCT 746224 28 100.0 32 ............................ CGGGCTCGGCCGCCGGGCAGGTGCCAGGGGTG 746284 28 100.0 32 ............................ AGCACCGGCTCTACTCGCTGCTCAGCCAGCTT 746344 28 96.4 32 ...........................G ACGTTCACCGCCACGGCCTCGTCGACGCCGCC 746404 28 100.0 32 ............................ AAGGTCTCCCGGCAGGGCGGCTCGGAGTTCGG 746464 28 100.0 33 ............................ CACGCGGTCAGCGCGCCGCCGGCGGTGAGCAGC 746525 28 100.0 32 ............................ ACGGCCTGGACGCCGGTCTCCACCGAGGTCAG 746585 28 100.0 32 ............................ CAGATCAGCGTGGACAGCACGCCGGTGGCGTC 746645 28 100.0 32 ............................ TCCCGGCCCAGGAAGGCGGCAGCCGATGACCA 746705 28 96.4 32 ...........................G ACCCCGACGCACTGTGGCGAGTAGTGCTGGAG 746765 28 96.4 32 ...........................G CCTGGCGTGGCGCGGGTGGCGGGCACGGCGTT 746825 28 100.0 32 ............................ GACCCGGAGCGGTGGGGTGCTCGGCTGGACGC 746885 28 100.0 32 ............................ GACGAGGGCAAGTCGGACCCGGTGGACGTCGG 746945 28 100.0 32 ............................ CGCGTCACGCAGATCCCGGGCCTGCGGCGTGA 747005 28 92.9 32 ......T....................A CCACCAGCGCCGACCCCGACACCGCCCGCATC 747065 28 100.0 32 ............................ CGGATCGTGTAGCCGAGCGCGACCGTGAGCGG 747125 28 96.4 32 ...........................G CTGGTCCCCGGGCTGCCCGACGAGCAGGCCCG 747185 28 92.9 32 ...................T.......T CCGTTGGCCCCGATCGACATGGGCGCGCCAGC 747245 28 96.4 32 ...........................G AGCGACGACGCGACCGCCCTCGTGGCGATCCG 747305 28 78.6 29 ......................CCCTTA CCGCGTCTACGTCGACAGCGTCGTTCTCC 747362 28 96.4 33 .....................C...... GTCATGTGGGACTCCGTCCCGTGGTTTGTCGGA 747423 27 89.3 31 ................-.....A....A AACCGGGCGTGCTTACGATCCGGCTGGGCTC 747481 28 82.1 30 ....C...T.T.....A.A......... GCATCCCGGATGATGCGCCGTCCGTCGTCG 747539 27 75.0 0 CCGT.....-.........A.......T | ========== ====== ====== ====== ============================ ================================= ================== 27 28 95.6 32 GTTCTCCCCGCGCAGCGGGGGTGGTCCC # Left flank : CGGAGAGGTGGGCGGCCGATGCGGTGTAGTGGTCTCCCCGCACAGCGGGGGCGAGTCCTCGCTGTCACCCTGCACGACAGTCTGGACCGCTTGGCGCACGGAAGTTGACGCGCGCCTCGTTCAGCAACAGGATGCTCGGCGCGCGAGGCGATCAGGTTGTGGGGGGGCGATCTTCGTCGGAGCACAATTCCCGCATTACCACCAGGCAACCCTCGTCGTCCGGTATCCAACGTCGCCGCGATCGCCGTAGGGGCCCGCCACGCAAGGTCCGGTTCAGCACGTGCACTTGGTCAAACCTGGACTTGTGTCCGGGATGCGGACGGCTGAACAATCAGCACGACGAGACATTCGCAGCTACGAACGCGGCGCAGCCGCGGCCCCGCCGGGCGCACCAAACCATGGCAGAACAGCCGAGATACGGAGTCCGCCGTCTTCGAGGACACACCATCCAGCAACATCACGGAACGGTAACCGGTCCGTATCGTGCCTGTTCAGGGAGC # Right flank : TGCAGCTTTGGGCCCTCCACGGCACCGACCCAGTCTGGGTGGACCCCCGCGTGTTCTCGTGCTGCGTCTGACCGAAGCCGGCCACACGCCACGGGCCGCGGAGAATTGGGCGTGCCGCAGCATTCCCGCCTACAACGACGTCACCGGCGAGCAGCTCGACGCGTTCGCCGCGTACCTGGCCGGGATGTGGAGCTGCTGGGAGGCGGCAAGCTGGGCGAGCCACAGGCACCGTCATCCTGGTGGCCGTACGTGAATGAACACCGCGTCATGGCGGCGTGGCACGCGCACCCATAGCTACCTGTTGGTGTTCTTCGGCAGGTAGGCAGTCGCGGACCAGGTTTCCTCCGTCGGTCTTGGTGGCCTCCAATCACCACCGCTCCGGGGGGACCAGTGCGGGGTTCACGGTGGAGGGCCGACTGAGGGAAAACCTGGCGAACAGACCCGGAGCCGCGGGTCGTCCTGGTATGCCGGACCCGCCCGGTGAGAGCGGTGGCCAGGGG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 800664-800936 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXGQ010000002.1 Saccharothrix sp. SC076 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 800664 30 100.0 31 .............................. GGCTCGACACCCCGGCATGTCGTTCCCCGGC 800725 30 93.3 31 .........C...................A TCCCGGCGCTCGGGCAGACGGGCACCACGCA 800786 30 96.7 31 .............................C ACGACCACCCCGCCGAGTCCGACGGGCAAAG 800847 30 93.3 31 ...........G................C. AGGCCAAGGCCCGCGGCACGCCGCCCGGCCT 800908 29 83.3 0 ...........G.........A...-..TT | ========== ====== ====== ====== ============================== =============================== ================== 5 30 93.3 31 GTCTTCCCCGCACACGCGGGGGTGGTCCGG # Left flank : CTTCGTGACATCGCTGCCGACACGAGGTGCCACGGTCCGCTTGATGGCCTGTCAGGTGAGCACAGCTGCGCGGCCGACGTCGCCTCACTTGATTCGCGGACGTCCATGTAGCCATACCTGGGAAAACATGGTCTCTGACATCCACACTCAAGTGCGCCACGATCTCAGGTCTTGCTGCAATCGCTGGGTTCCGGTCCACGCGCGGTCCACGCGAGCCGTTGGACTTGATCGAACGTCAAGTGATCAGCATGGGCGCTGCGTCTCCCGAGCAAGACACACAGCCCCATCGCAAGCTGCACACTCTTACTGCTGGCTGTAGACCAGACCCGGCCCGCCTCAGGGACGCCACTACGGCGTCCAACATCACGGACGTCTCCCCTGGCGAAGCCCTGGGTGGGCAACGCGGCAAGATGGGTAGCTGAACACCATCTCAATAAAGAGACTGTGGTGAACCGAATCAAAACGGCTTACTTACCAGGTAAAGTGCCAGGTCAAGAAGT # Right flank : TGCTCTCGCGCGGCGCGAAGCCTATTAGTCAGGCAACAACCCGCCAATACCCAAGAACGCGAGCACCGCCACCCCGATCAGCCACCACGGCGAGAACCAGCCCAGAATTACGGCTGTCAAGATCAGACCAGAGGCGAGCAGGAGCATGACCCCGAATTTTCGCAGCTGCCGTGCCTCTGTCCGGTCAGCCCTCCGAAGCTCAGGGATGCTTGCCTCAAACTCCAGCATCTCCTCAGTGAGCCGGTCAATCTCGTCCTGAAGCCTCAACCAGACCGACCCTTTATAGCTGGTTTCATCACGTAACCTCGCCTTGTCTTTGATCTTCCGCCGGAACTCCTCAAGCTCTTCTTCGTACGGATCGGTGTCTCTTACGGCCATGTGCCCCTACCTCGCATCCCGGTGCAGAATCTCCCTGCGGTGCGACCACGCGAGGTGGATCGCGGCAGAGGCACCTGGGGACAACTGCCCCGACTGACATAGCCGCTCGATCGTGTTGCCTT # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCACACGCGGGGGTGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 998344-998132 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXGQ010000001.1 Saccharothrix sp. SC076 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 998343 29 93.1 32 ........T...................T CGGTGGTGGACAATCCGCTTGTCGGCGAACTG 998282 29 100.0 32 ............................. CCGATCAACGACGAGTTGGGGCACCTCACCGG 998221 29 93.1 32 ............G...............C GTCACGCGCCAGCGGTCGGCGGGCAGCACTTG 998160 29 86.2 0 .A...................TC..G... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 93.1 32 GTCTTCCCCGCGCCAGCGGGGGTGGTCCG # Left flank : GGTCCGCCACGACTCGACCGAGCCGGGTTCGCCGCTGCACCCCGGTGCCGACGGCAACCGGTTCAAGCCCGAACTCGACGGCGCGCGGCCGGACCTGGTGTTCGGCAAGAGCGTGCACTCCGCGTTCCACGGCGAAGTGGACCTGCACGCGTGGCTGACCGGGCGCGGCATCACCGACGTCGTGCTGGCGGGCATCCAGACCAACATGTGCGTCGAGACCACCGCCCGCGTCGGCAACAACCTCGGCTACCGGGTGCGGGTGGTGCTCGACGCGACGTACACCTTCGACCTCGACGGCCTGACCGCCGAAGACCTGACCCGCGCCACCGCGGCGAACCTGCGTGGCGGCCGGTTCGCAGAGATCGCGGCCACCGCGGACTTCCTCTAGGTCCTCGACGCCGGAGGAGCGGGGTGGCCAGGTCGAGCACGCCTGGTAACGAGATGACGATGAGCCGAATGAAAACTGCCCCACCGCGCAGTAAAGTCACAGGTCAACAAGC # Right flank : CGCTCCGCGGGCCTTGCGGACGGCTCCTAGGCGAGGCCGCGGGCTTCGCGCACCACGGTCACGATCTCGTCCATGATCTGCGTCAGCTCGTAGTCCTTCGGCGTGAAGACGCGCGCGATGCCGCGTTCACGGAGCTTGTCGGCGTCGTCGGGCGGCACGATGCCCCCGACGACGACCGGCACGTCACCCGCACCGGCGGCACGCAAGCCGTCCACCACCGCGGGCACGACCTCCAGGTGCGATCCGGACAGCACGGACAACCCCACCACGTGCACGTCCTCCTGCACGGCAGCGGACACGATCTGTGCGGGTGTCAGCCGGATTCCCTGGTACACCACCTCGAACCCGACGTCCCGGGCACGCACCGCGACCTGCTCGGCCCCGTTGGAATGACCGTCCAAACCCGGTTTGCCGACCAGCATCCGCAGCCGCTCGCCCAGTTCGCCGCCAGTCACGCGCACGCGTTCCCGCACCCGTGCGATCTCCTCGCCCGCTTCGCC # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCCAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1099323-1098868 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXGQ010000001.1 Saccharothrix sp. SC076 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1099322 29 93.1 32 ........T...................G ACCGACGCCACCCCGCCCGGCACGCCCCTGCT 1099261 29 100.0 32 ............................. TGATGGGCGAGTTGGCGGAGCCGGACCGCAGG 1099199 29 93.1 4 ......T.................T.... GCAG Deletion [1099167] 1099200 29 93.1 31 ......T.................T.... TCGTCGCCGCCCGCCCTTGGACGGCACCACC 1099140 29 100.0 32 ............................. TTCACTCCGGGGCGTCGCCGCACCGGAAGATG 1099079 29 96.6 32 ............................G TCCGCAGACTGGGTCCGCCTGGTCGACCTCCG 1099018 29 96.6 32 ..............G.............. ACGATGCTCTGGCCCTGAGTGGCGGCCTGGAT 1098957 29 89.7 32 ...........A.............C..G GTCTTCCAGTTCGCCCGGAACACCAACGTGCG 1098896 29 82.8 0 .C...T..............A...G.T.. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 93.9 28 GTCTTCCCCGCGCGAGCGGGGGTGCTCCC # Left flank : TGCCGGCCCTGTCGCTGGTGGCCGAAGCGCCGACCGGCGAGATCGTGGGGCACGTGGTGTGCACACGGGCGACCGTGGCAGGCGAACCGGCCCTCGGCCTCGGACCGCTCGGCGTCCACCCGGACCACCAGCGGCGTGGTGTCGGGTCGGCGCTGGTGCACGCCGTGCTCGGCGCGGCCGACGCCCTGAACGAGCCGCTGGTGGCTTTGCTCGGCGAGCCCGCCTACTACGGGAGGTTCGGCTTCCGGCCCGCCGAGACCCTCGCCGTGACACCGCCGGTGGCGGAGTGGGGGCCGTACTTCCAGGTGCGGACCCTGCACTCCTACCGGGGACAGCGCGGACCGTTCCGGTACGCGGAGCCGTTCGAACGCCTCTAAGCCCTCAACACCGGCAACGGGGCGCGCGCTCCGCCGTGCAACGGCCCTCACAGGCCATAACGAGACGATGAGGAACCGAATGAAAACCGCCCCATCTCACTGAAAAACCACAGGTCAACAAGT # Right flank : TCTTCGGGGTAGAGCCGCTGGTGGTCCGCTTCGTCTTCCCCGCCAGCGGGTTCTCCCGCCCCGAAAGCGATCGTGTCCCCCCGGCGCGTCTCGCCGCGCCGGGGGGACACGCCTCAGGACAGGGTGAACGCCACCGCCGCAGTCGCCGTGAAGTCGATCGCCGGCTCCGAACTCGGCCACGAGCGCAGCTCGTCCAGGAACCGGGACGTGGCCGAGTCGAACTCCGCCGGGTACGACCGCGCGCACGGCACCGCGCCGTCGGGCAGCTCACCGAGCCCGTCGAACAACGCCGCCGCGTTCGGCCCGTTGATCACCGCGCCCACCAGCACCCGGTGACCGCCACCCGCGAGGTTCGCCGCCTGGTGGTGCGGGCACTCCGGGAACCGGCTGCCGACGCCGACGACGAGGGTGGTGCCCCACGCGTTCGCGCCGAGCGCGAAGTTGCGCTGCCCCACGCCGAACGCGTCGTAGCTCCGGTCACCGGTCAGCTCCCGGTGCAG # Questionable array : NO Score: 5.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.39, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGCTCCC # Alternate repeat : GTCTTCTCCGCGCGAGCGGGGGTGTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 200433-199978 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXGQ010000011.1 Saccharothrix sp. SC076 11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 200432 29 96.6 32 ............................C TTCTCGCCCATCGCCTTGCCCGCGCAGAACCC 200371 29 100.0 32 ............................. TTCGTGACCCAGCCCGGTACGAGTACCCATCC 200310 28 89.7 33 ........-................G..C CAGGTGGCCCACCGGTGGACGGCGGCGTTCGCC 200249 29 100.0 32 ............................. GTCGCCCGGTCGAACCGGGCGTTGTCCAACAC 200188 29 100.0 32 ............................. TGTCGTCCCTGTGGAACGCGCCGCCCGTGCCG 200127 29 96.6 32 ............................C GATGCTGGAGCCCGGCCGGGTGGTGCTGTCGC 200066 28 93.1 32 ........-...........A........ CTCTACGTCCGCAAGATCGGCGCGGTCGCTCA 200006 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 8 29 96.6 32 GTCTTCCCCGCGCCAGCGGGGATGGTCCG # Left flank : TACCGCCATGGGTCGGTGTCGTCGGTCGCACCCGGAGCGCCACGGTGAGCAGAGGTTTGACCACCGTGCTGGCCCGACCTCGGGCGGCGCAACCCGCGGCCCCGCGCCCACGGCGGGAGTACGCCGCTGCCGTCCCCACCTGACGTCATGGGTGACCGCGTGGCGGCTGGTAGGGAACACCTCGATCAGTCTGCGGCCATGCGGACCACTGCTCTGCTCGGCATGGGCAACTCGCCGCTGCCGACCCGTGGCGGACTCCACGCCGAAGTCGACGGGAGAGCAACGGGTCGATCACGACCCTGGGCATGGCACCACGTTGGCCACCACGACGCTTCGACGGACCAGCAACCCTGGACGCCGGTGTTGTCGGATACCGACGCCTTCCCTGCACCCACTCGTCGCCCACCCCGCCAAGCAACGGCATTGATGACTCGTAACGAGACCAAGGTGAACCGAATGAAAACCTCCCCACCCCGATGTAATGTCGCAGGTCAACAAGA # Right flank : CGCGGGTAGCGGACCTGACGCCACAGGTTCAGGTCTTCCAGCGCCAGCAGGGTGGTTTCAGCTCTGCTTCCACCTCGCGGCTACCGCCATATCGGTGTGACGCGCGACGATCGTCGCAGCCGCCTCCGCCGCCACGCTAAACGGCCTCACCAACGGCGGACGCGGGTGTGGCGGACGCGATCAAGGCCGGCGGCCGGCGTCGCGATCGCCAGGGCGATGATCCGGGACTTTTCCATGCGAGCCGCTCCCAGGAATGGTTCACACGAGTCCTTCTCCCCCAGGAGGTCGGGATCGATTCCACAACGCGACAACACATGCGCCTTAGCGATGAGCGCACTGCTCTACGCATTCAGCGTCTACCGCCTTTCAGCACGGCGTGGGACCCTCGCCTCGGGCGGAGCGGGATCGGGGAAGTTATGCGGAACGTGTTCGACAGCGCTGTAGTGCCTGGTCACGAGCGGGTGGAAGCCTGGCGGCACGTCACCGGGGCCGCATTGGTG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCCAGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 368998-368784 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXGQ010000004.1 Saccharothrix sp. SC076 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 368997 29 93.1 33 .....T......................G GCTCAACCCATACTTGACCCACACTTCGCTCTG 368935 29 100.0 33 ............................. TACCCGGGTGGGGAGACCGTCGCCTGGGCCGAG 368873 29 96.6 32 ........T.................... AGCCGGTGGTTGCCGGACTGCTGCGGCTTCGC 368812 29 72.4 0 .G..........TTG..A......C.T.G | ========== ====== ====== ====== ============================= ================================= ================== 4 29 90.5 33 GTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Left flank : TGTAGTGGAGAGATGAGCAGGCAGTTCTCCCGAAGCGCGTCGTGGGGTACGAATGCGCTCTTGGCATCGGGCTTGGCGTTGACGCCCCCTGGTGCGGTGGACCGGTGGCCGCGGTCCTGCCCGCTGTCGTCACGTTCGAGCGCATCAGCCGCCGGTGGGCGTCATCGGGGCTCATGCCGCGGTCTTGCCGAGTACCGCGGGTGGCCGGACTCGCGGTCGAGAGCCCGGGGGCCGTGCGCAGCCTGGAACGTGCCATAGCGTTGGCGCGCCATGCCTGGGACGCTCGCGCATGGCCTCAGCTTTACGCCACTCTGACACACGGCGACCGCGCGCACTGGCGGCCCAGGGGTACGCGCCCATCGGGCGCTGAGCGTGGCGGACGCGGCGCTGTCGCGCGCTGAAGGCGAACCGCCTCCCGACGCCTACAGCTCATAACGAGACGATGATGAACCGAATGAAAACCACCCCACCCCGCAGTAAAGTCACAGGGGTCATGAAGT # Right flank : GGAACCTCGACCGGCCCGACGGCCGCACCCGGTCTTCCGCCCACGCGGGTGCTCCCCGCACGACCCGCGGTGCACGGCAGACCGGGCGCCCCAGCGACCCCGGCACCGCCGGGTGCCCGGGACAAGGCCGTGGTGATCCTCGGCGCGAACCCGAGGATCACCACGCAGGTCACCGGGCGGCGTCGGTCAGGGGCTCGTCGGTGAGGAAGCCGCCGGACTGGTGGTGCCACAGGCGGGCGTAGGCGCCCTGTGCCCGGAGCAGTTCCTCGTGCGTGCCCTGCTCCACGATCCGACCCTCGTCCAGCACGATCAGCCGGTCCATGCGGACCACGGTGCTGAGCCGGTGCGCCACCACGATGGCGGTCCGGTCCTCCATCAACCGCCACAGCGCCTCCTGCACCAGGACCTCGTTCTCCGAGTCCAGCGCGCTGGTCGCCTCGTCCAGCAGCAGGATCGGCGCGTCACGCAGGATGGCGCGGGCCAGGGCGACCCGCTGGCGC # Questionable array : NO Score: 3.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 449094-449673 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXGQ010000004.1 Saccharothrix sp. SC076 4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 449094 29 100.0 32 ............................. CACCGGTTCAGCTTGATCGTGCGGGTCGGGGT 449155 29 100.0 32 ............................. TCGCCCACGACTTCGCGGTTGAGGTCGCCTGG 449216 29 96.6 32 ............................G GACGTGATGGCGCAGGCCCTCGCCTACCTGGC 449277 29 96.6 32 ...........A................. TTGAGTCGACGCGCCGCCTGTCGGAGGGTGAG 449338 29 100.0 32 ............................. AGCTCGACCCGAGCCGTGTGGTCCTCGGGCAG 449399 29 100.0 32 ............................. TCGACCGGCGCGCTGACGCTGTCCGCGGCACA 449460 29 93.1 32 ..A.........................G TCCGCCGCCGTCCGGTCCTCCGACTTGATCGC 449521 29 96.6 33 ...................A......... GTCGCCCACGCCCCCGATCACGCCAGGCCCCTG 449583 29 100.0 32 ............................. AAGAAGGTCACGCGCGACCTGGCCGAGCCGCG 449644 29 96.6 0 ..............G.............. | T [449669] ========== ====== ====== ====== ============================= ================================= ================== 10 29 98.0 32 GTCTTCCCCGCGCCAGCGGGGGTGGTCCC # Left flank : TGGACCCGGCGGACCGCGACCTGCTCCGGTACTGCGCGGCGGCCCTGGCCGAGGTCCTGCCCGAACCGGGTGACCGGCTGCTGCACTGGGACCTGCACTACGACAACGTCCTGGCGGGCGACCGCGAACCGTGGCTGGCCATCGACCCGGAACCGCTGGCGGGCGACCCGGCGTTCGACCTGCTCCCGGCCCTGGACAACCGCTGGGACGGGTCCGACGCGCGCCACACCACCCTCCGCCGCTTCGACCAGCTGACCGAGACCATGGGCCTCGACCGGGACCGCGCGGCACACTGGACCCTGGGCCGCGTGCTCCAGAACGTGCTGTGGGACGTGGAGGACGGCGAGCCCGTGGTGGACCCGGTGCAACGGACGATCGCGACGGTCGTGGCGGAGCACCGGCTCGGGTGAGGCGCGGACGGTGCCCGTGCCTCATAACGAGACGATGATGAGCCGAATGAAAACCGCCCTACTCCGCGGTAAAGTCACAGGTAAACAAGT # Right flank : CGGTTCAGGGCCGGCCTAGCCGCCGGCCTTCCACTCGTCGTGGTACTCGGCGAACACCGTGCGCAGGTGGTGGCCGATCTTCAGGTAGTCCAGGTCGTCCAGGTTCGCCAACGACACCCGCACCGACCACTTCGGCCCGTCGAAGCCGCCTCCGTTGAGCAACACGACGGAGGCGTGCTCCGCCAACCGGAACAACGGGTCGATCGGCTCGTAGGTGTCCTCCAGGTACTTGGCGAACTCGGCGCCGTGCACGCGCTCCGCCTCCGCCAGCAGGTCCAGCTCCAGGTAGTACCCGGCACGCTGGGGGTCGTCGGCGATCTTCATGCCCACGCCCTCGACCAGCAGCCCGAGGCGGGTGCGGACGATCTCCTGCACGCGTGCCTTGTACGCCTGCCCGTCGGGCAGCAACGTGAACAAGGAGAACAACCCGAGCTGGACCTGCTGCGGCAGGCTGAGGCCCGCCGTGTGGTTGAGCGCCACGCGGCGGGAATCGGCCACCA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCCAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 774026-774727 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXGQ010000004.1 Saccharothrix sp. SC076 4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 774026 29 100.0 32 ............................. CGGGTTCACAAGAGCTTCTGCGTCCTGGAATA 774087 29 100.0 32 ............................. TTCGACACCGGACTGATCTGATCAATGAACCG 774148 29 100.0 32 ............................. TGCCGCCCGAAGCGGTCCGCAACCTCCGGCCG 774209 29 96.6 32 ............................G TCCGCCAGCAGATGCGCCACGTGACAGGGCAG 774270 29 100.0 32 ............................. AATCGACGCATCATCGGACTTCTTGTTTCTGC 774331 29 100.0 33 ............................. CACACCCGCCGCCGGGCCGCACGCGCCTACATG 774393 29 100.0 32 ............................. GGCCCGGGAACGCCGTCCGACGGGGTCGCCGG 774454 29 96.6 32 ............................T TGAGGAGGAGTCCCGACGCCCTCCGGATGGTT 774515 29 93.1 33 ..................A.........G TGCTGTGCGTCCTGCCAGACGGCCACCGGCCCG 774577 29 100.0 32 ............................. TCATCGACGATGATCGGACGCAGCGGGGTCTC 774638 29 100.0 32 ............................. TGCGCGCTCTGGGCTACGTCTACCGAGGCCGC 774699 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.9 32 GTCTTCCCCGCGCCAGCGGGGGTGGTCCC # Left flank : CAAGGCTTCGACCTCAGCCGCGTTGCCCCGCCGCCACGGGTCGTCGACCCACGCGTCGTAAGCGGACGGGCTCTCCCAGGTCGCGGTCACGACGTACCGGTCACCACCGCCGACGGGCCGGTGCAGGGCCGCTCCCAGACAGCCCGGCTTGGCCAGAGCGCGTTCCAGCACCCGGTGCTCGCGGAAGAACTCCTCAAGCTCCGCACCCCCGCCGGGGCGGGCGGACAGGTAGAGAACGCTGCGAATCACGGTGCCTCCCGAGTGTGGTTTCGCCGCCCTGAGCGGCGAGAGCGTCACTGTAGGAAGCGCGTTCACGGCTGCTGTGCTTGGAGCACCCTCATGAGGGGTTCGCCTGTGCGTGTGGCCCAGCGCGTGTCTTCTGGGGCAGAGGAGGCGTCCGGCCGCGTGCTCCGAGTAACGGCGCCTGCAACACATAACGAGACGATGATGAACCGAATGAAAACCGCCCCAGGCCGCTATAAGGTCACAGGTCAACAAGT # Right flank : TCGGGGTGAGCCGTCGACACCACCTCGACGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCCAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 87340-87067 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXGQ010000006.1 Saccharothrix sp. SC076 6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 87339 29 100.0 33 ............................. ACCGGCCGCTGGCCGGCCACGTCCCAGGTGTGC 87277 29 100.0 32 ............................. GTCAGTGGGTTTGTCACGGCGTCGGCTCGGGT 87216 29 100.0 32 ............................. TCACCGCGGAGTCGTGCAGGTACATCCGCCAC 87155 28 89.7 32 .....................-....T.G TCGTCTGTCAGTGACCACCTCGGCTACCGGGC 87095 29 89.7 0 ..............G..........G..A | ========== ====== ====== ====== ============================= ================================= ================== 5 29 95.9 32 GTCTTCCCCGCGCCAGCGGGGGTGGTCCC # Left flank : CGGTGGGACGCGTTTGCCGCCTGCGCATCCGATCGAGGCACGCGTTCACCACTATTCGGTGCAACCACGTCGTGACCTGCGATTCCGCCCGGAAGCTCCCGGCGGCGCGGAACGCCGAGATGAACGCCTCCTGCAACGCGTCCGCCGCCTCTTCGGGGTCGCGCAACGTGCGCAACGCGACCGCCCACATCCGATCTCGGTGGCGTTTCACCAGCTCCGAGAACGCGTGCGGGTCGCCGGCGGCATGAGCCGCGATGAGGTCTGCGTCCGAGCTGGCTGCGGCGGTCACGGAGAGAGGGTATCGGCACCGCCGGGGTGCACCACGATCACCCGTTCAGCGATGTTCCCGCACCCCGGTCCGCGCGCGGGGGCGTGCGCTCGGGGTCAGGGGGTCCACCCAAGCCCCTTCGCCGAGCGACGGTGCCCGAAGCTCATAACGAGACGATGGTGAACCGAATGAAAACCACCCCACCCGGCTGTAAAGTCACAGGTCAACAAGG # Right flank : AGGCCGGCCGGCCTTGGCCCCAGCGGTGAGGGGCTAGAACGGGACGCCGCAGCGCAGCAACACGTTCGCGTACGGGGTCGCCTCACCCGTGCGGATCACCAGGCGGACACCCGCGACCCGCGCCTTGAACTCCTCGTGCGCCACGCGGTCGACCAGCGGCAGACGGGTGGTCAGCGCCGCGGCGCACCGCGGGTTGCGCTCGTCCACCTCGGCGGCGACCAGAGCGCGCTCCACCACCAACTCCGCCAGCACCGCGTCCAGCACCTGGAGAAGCGACGGCACGCCGAACACGAACGCCAGGTCCACCACCGCCGGCCCGGCCGGGATCGGCAGGCCGCAGTCCGCGACCACCAGCTCGTCGGTGTGGCCGAGCCTCGCCAACTCGGCGTTCAGGCCCGCGTGCAGGATGCCCGCCCGCTTCACGGCAGCACCTCCCCCGCGGTCGGGTACGACGGCTGCGCGCCCGCCCTGGTCACGGACGTCGCCGCCACCCGCGCCGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCCAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //