Array 1 347527-350140 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDBZ01000005.1 Listeria monocytogenes strain ICDC_LM0452 LM0452Scaffold4_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 347527 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 347593 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 347659 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 347725 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 347791 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 347857 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 347923 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 347989 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 348056 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 348122 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 348188 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 348254 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 348320 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 348386 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 348452 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 348518 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 348584 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 348650 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 348716 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 348782 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 348848 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 348914 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 348980 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 349046 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 349112 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 349178 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 349244 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 349310 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 349376 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 349442 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 349508 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 349574 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 349640 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 349706 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 349772 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 349838 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 349904 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 349970 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 350036 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 350102 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [350127,350133,350136] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //