Array 1 35790-33724 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAINZ010000019.1 Dorea longicatena strain MSK.13.55 NODE_19_length_64608_cov_263.212, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 35789 32 100.0 34 ................................ TTCAATATCTTTCTTATCAACAGTAATTGTTTCC 35723 32 100.0 33 ................................ GGATCATAGGTACGAAATTCTAATAGCTGCTAC 35658 32 100.0 34 ................................ TCAAAGGCTCCGACTGTACTTGTATCTCTTTCCG 35592 32 100.0 34 ................................ ATGTGATAAGATTTTACAGACAATATGAAGATGA 35526 32 100.0 33 ................................ ACCCGATATCGGTTATCCGCAAACTGGCGACAA 35461 32 100.0 33 ................................ AGCAATATCGCAAGAGGTAGCTCAGATTACCTC 35396 32 100.0 35 ................................ TACACCTCCCATAAACGTAATGATCCCGACGTTGC 35329 32 100.0 34 ................................ GATAATATTGCGGACATTGACGGTGGATGGTTTG 35263 32 100.0 33 ................................ TTTTATCTCTTCGCCACGATAGCTCGCGTCTTT 35198 32 100.0 33 ................................ GTGATGTACGATGCAACATTAACACATAAAACA 35133 32 100.0 34 ................................ ATCCATTTTCTTCATATACCTCACTCTTTCTTAA 35067 32 100.0 34 ................................ TCTTAATCGATTTTGTTCTCGTATCTTATCCATT 35001 32 96.9 32 ......T......................... CGTGGGAAACCAGAACTTGCGGAATGGGCGTT 34937 32 100.0 33 ................................ GGATGTGAGTGTGAATACTGTGATGATGAAAAT 34872 32 100.0 35 ................................ AATGGCTGGATGATTCCTGTTCCCTCTTTCCATCC 34805 32 100.0 34 ................................ ATTAACTGGTGTGCATTTCCAAGGGGAGGGGCAT 34739 32 100.0 34 ................................ ATTAACTGGTGTGCATTTCCAAGGGGAGGGGCAT 34673 32 100.0 35 ................................ AGAAATGTTTGAAAATATCGCATACATTATGGCAC 34606 32 100.0 33 ................................ ACATCCGGAATGAACCGGCGGTACAAGCTGATC 34541 32 100.0 33 ................................ CATGTTGTGGTTCTGTTGGTAACGCCATGAGTG 34476 32 100.0 34 ................................ TTGGCACACACGATGAACTTAATCTGTCCTTTAT 34410 32 100.0 34 ................................ ACTGACTTAATCTCTATAATGTAAGGTATCTTTT 34344 32 96.9 33 ..............................G. GATGATGAACTAAATTTGAAAGCATTACTTGAC 34279 32 96.9 34 ..........A..................... GTCATACACCACTTGCTCTGCAGCCTTTACGATC 34213 32 96.9 33 ........T....................... AACTATATCGTCTATTTACAGACAAAAGGTTTC 34148 32 96.9 33 ..........A..................... GTAATGAATCCATTTTCCAGAAGTCTATAGCCG 34083 32 96.9 33 ..........A..................... GTAATGAATCCATTTTCCAGAAGTCTATAGCCG 34018 32 96.9 33 ..........A..................... GTAATGAATCCATTTTCCAGAAGTCTATAGCCG 33953 32 96.9 34 ..........A..................... ACTTGCGAGTTCAATGATTCAATCTTGGCAGATG 33887 32 96.9 34 ..........A..................... ATATCAGGTGATGTTGGGAAACAATTGGAAAACC 33821 32 96.9 34 ..........A..................... GTGAATGAAGCATCCATCAGAAACGGTAAGCTGA 33755 32 93.8 0 .....T....A..................... | ========== ====== ====== ====== ================================ =================================== ================== 32 32 98.8 34 GTCATCCTCCTTGTGAGGATGTGAGTTGAAAA # Left flank : AGACGAATATCCACCGTTCTTCTGGAAGTAGGTGATGGAATGCTGGTTTTGATTACATATGATGTAAATACCCAGACATCTGCTGGGAAAAGGCGATTAAGAAAAGTAGCAAAAGAATGTACAAACTATGGAACTCGTGTGCAAAATTCTGTATTTGAATGTCAAATGGATGCAACAAAATGCAGGCAGGTAAAACATATCTTAGAGGATATTATAGATAAAGACGTTGATAGTTTGCGGTTTTATTATCTAGGTGATAAGTATAAAAATAAGGTAGAACATATTGGCGCAAAACCTGGATTTGATGTTACGGATACTTTGATATTTTAGTGCGAATAATAAGCGCACAGAAATCTTCTTGGAGATTCGCACCGGAAAATGGTGTGCTTTTCCAGAAGAAAAGTAAATAGGAATTAGAAAAAATATAAATTTTTAACGTATTATATTCAAAGGGTATAATACGTGCAGTTTTAGACAGAGTGTTTTTGTTTAAAATTGCT # Right flank : GAGAATGATGTAAAAATGTATGGTACTCAAGTATAGCCCTTTTTATGAGAAAAATAGTTCCAAGTAACGATATGAATTCAATTTATGTTATGCGAAAAAGGGGAGAATTGAAAGAATATAAGTTACAGTTTCTTAGCATTAAAAAAGGACTGCATTATTAGGGAGGAGTGCAGCCCTGAGGAAAAAGTTATGAAAAAGATTTAAAGTGTTTGTTCTTTTGAACAATTCCTAGTATAGAAGCGAATTGTGATAAAAGTGTGATGGAATTAGGAAGAAATTGTTAACAAATTAAAAACATAAAATAGAATACGATTGGATGCATCATAAACGGTGCCAATGTTGAAATCCAAAAGTCCGGGTGTTAGAATTACAACAGATACTATACATAGAAGATATATATAAATATCAAAGAACACAAGAAACCACACAGAACATACGAACAAACACCAAGGAGGAATACACCATGCGGATCCTAATCTACGGCGCCGGAGTCATCGGAA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATCCTCCTTGTGAGGATGTGAGTTGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.00,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 7656-8087 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAINZ010000047.1 Dorea longicatena strain MSK.13.55 NODE_47_length_22092_cov_224.791, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 7656 36 100.0 30 .................................... TGAAGCGGAAGATTACAGCACAGATCAGCC 7722 36 100.0 30 .................................... GAGTTGTTTTAGAAGAAGAAAGATAATATT 7788 36 100.0 30 .................................... TAAAAGAGTGTGTTGAAAAGGTAGTTATCA 7854 36 100.0 30 .................................... TGGAACGCGTAAAGCGTGGACTGTGGATGG 7920 36 100.0 30 .................................... CAAAACAGATGTTAGTATACAGGGCGAGAG 7986 36 100.0 30 .................................... ATCAACAGAATGAAAATTGAAGAGCAGAAA 8052 36 94.4 0 .............A.................C.... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 99.2 30 GTTTGAGAGTCTTGTTAATACGGAAGGATTTTAAAC # Left flank : AAAAAGGATTCTATCTCAGCTTTATAAAAATCTTTCAGAAAAAATATTGGAAGATCATTTTGAAGAATTTGCGACTGTGAATCAGAAGGTTATCCAGTTTATGGATAAGGTTACGAGTTCTTCCGAATATAATCTGACATATGATGTTGATTTTCAGGCAGCAGGTCTGATAAAATATTGTAATGTACATATGGATTCCTGTTATGATAGTCTGACTGAAAAGTTTATAAACTATCTGAGAACCATGAAGCAGATCTGTAATGTTGATATTGTTTTTGTGTTGAATCTGAAGCAATATTTCAGTACCGAGGATCTGAGAGAAATCTATAAACACTGTTTTTATACGAAGATGTATCTTATTAATTTGGAAGGAGTAAAATCAGACCCCATCGAAAGTGACAGATATGTTATTATAGATAAAGATCTTTGTGTGCTGGACCTTGTGTATTAACAATCTTCTATCGTAAGAAGATAACGACTCGGCGAGAACCGGATTTGAG # Right flank : CCACCAAAGAGTTCAGTAAAATCAAGCGTTCTCAGTTCTGCAAACGATAATTTAACAGAATATCGAAAAAGAGCAACAAACCCCGAAAATCCAGTATTTCCGGGGCTTTTCTTTGCGTATCATTTGATTTTATTCCTGCAATAATTGCTTTTCAAAGGTGGATAATAATTTGTTGATTGTAAAGAAATAACTCTTGCATTCGCTGCATGTTTTTGCATCGACTTCGATATCACCAAGAATGATGAGTTTGGCAGCCTGGAGTGCTGCAATAATGGTACGAAATTCGTCGGGTGTAATATCTGTGGCGTGATTAATCAATTTTTTCGCCGCAGAACAACAGAGTTGATAATTAATTTCTGCCTGGGCTTCTGATTCTGCAAGTCCAAGACGAGGCAGAACGGTAAGAGCATAAGCGGTTGCTTCTATGTCAGAATGATTAAAGGCATAGGAAATATGGCTCATAGTAAAACCTCCTTAAGTTTTTAAGAAAATTATAACAT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTCTTGTTAATACGGAAGGATTTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //