Array 1 252005-252181 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCYE01000022.1 Bifidobacterium dentium strain DE-29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================== ================== 252005 24 100.0 27 ........................ GTAAAGCAGTCGAAACCACGTTGCGAA 252056 24 95.8 27 .............T.......... GACAGGGTGGCGAATCCGAGGTGCGGA 252107 24 91.7 27 ..G.T................... GTCAGGACGTCAAAACCGGGGCGCAGT 252158 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =========================== ================== 4 24 96.9 27 TGTCCGATTCTGGAGAATCGGACA # Left flank : GCAGACGCCCGCCGGCCTGATGCGTCCGAAAGCCCCGCGCGCAGGTTCGCGCATTCTATTGGAGCGGATTACGCCGATTTGGAGTCGTTTGGGATTCCTAAGCAAGGTTACTGCGCGCAATATCTTCCGTTTCAAGTCGCGCCTGGTCATGACGGTCGGAGGCGTTGCCGGATGCACGGCGTTGATCATATGCGGGCTTGCGATCAACGACACCGTGGCGGAACTTGGCATCAAACAGTATCGCGATATCTACCGATACGATGTGATGGTCGTTGCGAACGATACCGATGCGGATGCAATGCGGGCGAAGTTGCAAGCGGACGGGCGTACGACTTCGACCATGGACATACGTGTCGAATCCGGTGATCTGGCGAACGATGAGGGAAGCGAGAGCATCCAACTTGTGGTGGTGCCCGAGGAGCATCTGGATGAACTGGGCGAGATGGTTACGCTCAAGCCGGTCGCGTCCGGATGGGATGGTGTGCGCAAGTTCTTCGGAC # Right flank : AAACGAAGCGGCTCGAAGGTGGTGTTGGGCGACAGTGGGGTGATCGTGTCGCAGTCGGCGGCCAACGCTCTGGGCGTTAAGGCCGGCGATACGGTGAATCTCACCAACGGCGATGGCATTCAGGCCAAGGCCAAGGTGAGCGAGGTGACGCGTAACCTCATAGGTTCCGACATCTACGTGAGTGAATCGTATTATGGCAAGCTGTTCGGTTCAGGGTCCGGAATGTCCGATTCTCCAGAATCGGACAAATCGGATTCCGGCGGCTCCCTGACCTGGAACGCCGTATACGCCAAGCTCACCGGAGCCGACGATGCGCAGATTGCATACGCCAACACCCTCGAAAAGGATGATTCGGTGATGAAGACGGTGTGCTGCGCGGACATGGCCGCCAGCTTCAAATTTGACCTCATGGGCGCGGTGGTCGCCTTGATCGTTGCGCTTGCGGGCGGGCTGGCGCTTGTGGTGCTGTTCACGCTTGCCAATACGAATGTGTCGGAACG # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGATTCTGGAGAATCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.00,-3.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 115403-122991 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCYE01000004.1 Bifidobacterium dentium strain DE-29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 115403 33 100.0 34 ................................. AAATCCGGCATCATGCAGTCGCGAGCATGATGTC 115470 33 100.0 33 ................................. GTTTATCCAACGATCGAAATTTCGGCGGGAACG 115536 33 100.0 33 ................................. AAGTTCTTCAGCATCGAACCGGTGGACGAGACG 115602 33 100.0 33 ................................. CCCTTGGTTTTTCTACCCGCCCCCGTCCTGCGT 115668 33 100.0 34 ................................. CACAAGTTGGGATTGCCATAGGCGGACAGTTCAC 115735 33 100.0 34 ................................. GTGACACCGAACGCCGCGTCCAGCATGTCGCCCG 115802 33 100.0 33 ................................. GAAAATTCGACGCCATCCAACCGGTCGAAATAT 115868 33 100.0 34 ................................. CTCGTACAGGTTCGGCGCGAAAACGCCATTGCCC 115935 33 100.0 35 ................................. CTCCAAATGAAGAATGTCCTCGGCGATGAAGACTT 116003 33 100.0 33 ................................. AGCTCCCATCTGGCTGGGGTCCTTGGCCTTCCA 116069 33 100.0 35 ................................. CTGGATTGTCCCGAAGACCCGTACAAGGGGCATAA 116137 33 100.0 34 ................................. CGGTTGGCATGTCGTGCGAGTTCCAGCGTCTCGT 116204 33 100.0 34 ................................. TCATGTGTTTCATGGTTTGCTTTCCGTGATGATG 116271 33 100.0 34 ................................. ATCACGAACCCGCCGCCATCCATCCAGCTCATCG 116338 33 100.0 35 ................................. CTTGAAATGGCGAACACGTTGGAGACGTTGCGTGT 116406 33 100.0 33 ................................. AACTACTTGAATGCGAATGGCGACATTCCGTTG 116472 33 100.0 33 ................................. GTCACAGGCCGGCCAGCCACGACCAGTCGCCTA 116538 33 100.0 34 ................................. GTGATCGTCGTGGTGCCTGTGGAGGTGGTGACAG 116605 33 100.0 35 ................................. ATCCAAGTTTTGGGCGATGCGCATTTGTATGAGAC 116673 33 100.0 35 ................................. ATCGGTCACCCGCAATGCGATCTCCCGCATTCCGG 116741 33 100.0 34 ................................. ATCGACGAGTGGGGTGCGTTGAAGCAATGTGCGA 116808 33 100.0 36 ................................. CTCGTTCCATTGAGATTTTTTCGCAGAGGGTTTCGA 116877 33 100.0 33 ................................. TTCACGGCGGCCGACGGTACCATCCTCGACTCG 116943 33 100.0 33 ................................. GTGACCGTCGTGGTACCTGTGGAGGTGGTGACA 117009 33 100.0 34 ................................. GACCCGTTCGTCAGGCCGGTGAGCGTGTCCTGGG 117076 33 100.0 34 ................................. GAAGAACGCCAGTCGGGACGTGTACCGCGAGCTC 117143 33 100.0 34 ................................. TCCGCGACGAATGGCTCCCATATGGCAAGCCCGA 117210 33 100.0 34 ................................. GACGTCAATCGTGTCGAAACGTATATCGACGTCG 117277 33 100.0 34 ................................. AAACCGACGCTGTCCGCGCCTACGATGGCGGCGG 117344 33 100.0 34 ................................. GCGTAGTTCGTCGATGTGTGACGCCACTTCTTGC 117411 33 100.0 34 ................................. AGCCGACCGGCGTCACCTACGCTCTGGAGGGTGC 117478 33 100.0 34 ................................. GGCAAGGAAGTGAGGGGGCTGAAAGGCAAGGTCG 117545 33 100.0 33 ................................. CAAAGGGCCCCCTGTGATTCGACGGTTTCGAGA 117611 33 100.0 34 ................................. ACGCGGGCACCGAATACGGCGAGCTCACGGTACA 117678 33 100.0 35 ................................. TCCGTCCGGGGGGATTGCTGCGATGAGTTTGTCTG 117746 33 100.0 33 ................................. ATGATAAGCTTCGCCATCTGTTTCCTTTCACCC 117812 33 100.0 34 ................................. TCAAAAATGCTGCCGCTTGCGGTAGTGGTTTTCG 117879 33 100.0 33 ................................. TGGTCGATGTCGGTCAGGACTCGCGTGACATAG 117945 33 100.0 33 ................................. TTGACCCGTTTATCGCATATGTCGTGCATGTAC 118011 33 100.0 34 ................................. TGTTGGACAACCGTAGCGTGTATGGGCTTAATCG 118078 33 100.0 33 ................................. CCATAAGACCTTATAATTGTCAGTTTCGCACCA 118144 33 100.0 34 ................................. GCCAATCTCTGAGATTGCCTGATCGTACTCGCTG 118211 33 100.0 34 ................................. GGTAGGAGAGGGCCGGAAGTCACATTGCAGTACA 118278 33 100.0 34 ................................. CGTTTGAAGGATGCGACGCACGACTGTTACATAA 118345 33 100.0 33 ................................. GGCTATTCGGTCGCCTAATTTTGATCCTCCTTG 118411 33 100.0 33 ................................. TGGGAGAAGAGCATCTGCGCGATGATATTGGCG 118477 33 100.0 33 ................................. TGGTCGATGCTGATTGTTGAGTTGTTTGACACG 118543 33 100.0 34 ................................. CATTCGACTCCGATGGGCCTGCCCGAATCAGCCA 118610 33 100.0 33 ................................. ATCGACAATGACGGCATCCTGCACTGCGGATTG 118676 33 100.0 33 ................................. ACCGGCACCTGCACGTATTCCGTCCGATATCCC 118742 33 100.0 35 ................................. TCCGTGGTCGAATTGTCGATGCCCAAATAGTTGAC 118810 33 100.0 33 ................................. CACACCGTCACGCCGCTTTCGAAAATGCCTTTG 118876 33 100.0 33 ................................. ATATCCCCCAGCGCTACCGGCATTTGAAGAAAC 118942 33 100.0 34 ................................. CATGGTCTGGTTGCCGAGCCATTCCGCGGCCTTC 119009 33 100.0 34 ................................. ATGGTTACCGCCGGCAACATCGGCGGAGTCAACA 119076 33 100.0 34 ................................. CGTCTGAGTTATCTCAAGGCGCGGCAACAGGCGT 119143 33 100.0 34 ................................. CACGCAGTGGGATCCCCGTATGTGGAACGTTCAT 119210 33 100.0 35 ................................. ACGATACATGTCTCGATTCGTGTTTTTCGAGTCTT 119278 33 100.0 35 ................................. CCTCGGCGTCTAAATCATCATCACATCATCTACAG 119346 33 100.0 34 ................................. AGCACGATATCCGGCTCGGCAACGCCTACGTAGA 119413 33 100.0 34 ................................. TACAAGCATAGGGGGTCTATTACGCCTAACCCGT 119480 33 100.0 34 ................................. TCTTGCCTTAACGAGGTTTTGCGCGGTGAGTTTG 119547 33 100.0 33 ................................. AATCAGCTTAATATACTGATTGATGCGCAGCGA 119613 33 100.0 34 ................................. AGGATGAGCTTGAGCATATATATCTTGGTCATCT 119680 33 100.0 34 ................................. GTCAACGCGGTCCTCTTCTCCCCACGCTCCGACA 119747 33 100.0 35 ................................. ATCACCGGCATCGAATACCTGACCCCACAGACCAC 119815 33 100.0 33 ................................. ATTTATGCTACGCTGTATGGCGCCACGCCCTAG 119881 33 100.0 33 ................................. TAATGCGTCGTTGTGTCATATTGATAGCGACAT 119947 33 100.0 34 ................................. CACGAGCTTGTTGATGGTGTCACCGATACCATCG 120014 33 100.0 34 ................................. TTGAGTGGCGTGAGCGAGCCGTAAAGACATGCTC 120081 33 100.0 34 ................................. ACAGAGCCCGAATGCGGCAAAATTGATGGAACTG 120148 33 100.0 34 ................................. ACCGATAGGATGAAACTTTTTAATGCACGTAACG 120215 33 100.0 33 ................................. CAATTACGTGACACTTGAAGGATGGTCTTGCGA 120281 33 100.0 36 ................................. TCAGCATCAGCCTTGACAGAATCCACCTCAGCCTGC 120350 33 100.0 34 ................................. CACCAATCCGCCCAATATTTGGATACGGTGTCGC 120417 33 100.0 33 ................................. AAGGGGCAGAAACTCACCTTCGGAAGCACCATC 120483 33 100.0 33 ................................. TCGATCAGGACAAGGCGGAAGAAATCTACTCTC 120549 33 100.0 33 ................................. TACACATACTGGCAAGGCGAGCCGAACGCTTCG 120615 33 100.0 33 ................................. TCCTCGTTGTCCCGTCTGATCGGCCTGCCGTAC 120681 33 100.0 34 ................................. CACCGGTCCGTCTGGCTGTAGCCGAGGTTGGCGA 120748 33 100.0 33 ................................. TCCTCGTTGTCCCGTCTGATCGGCCTGCCGTAC 120814 33 100.0 36 ................................. CTCATCCAATGCCTCTTCGACCCGGATCGCGTACGC 120883 33 100.0 34 ................................. CACCGGTCCGTCTGGCTGTAGCCGAGGTTGGCGA 120950 33 100.0 34 ................................. TCAGCTCGCTGGTCAATGGTGGCGGCTGCGACTG 121017 33 100.0 36 ................................. TTAAAGTATAAAGGTTTGATTTTTAAAGAAGAATAT 121086 33 100.0 33 ................................. GCCCAGAACGGCGTCATCGGCGCCGAGGCGGGC 121152 33 100.0 36 ................................. TTAAAGTATAAAGGTTTGATTTTTAAAGAAGAATAT 121221 33 100.0 33 ................................. ATGATGTCCGAAGCCGTGGATTCGTAGGTCATC 121287 33 100.0 34 ................................. ACTGCAATACAAGTGCCACGACATGCCGTCAACA 121354 33 100.0 34 ................................. TCCGCCAATCCGTCGCAGTCTTGGGATGATTGGC 121421 33 100.0 33 ................................. CTGCCAGCTTCGGCACGTTTCTCTCGAAGCGCC 121487 33 100.0 34 ................................. CATCCTCAGAACTCAGACGGTCGATACGAAGTGC 121554 33 100.0 33 ................................. GGGTAGTAGCGGTTGATGAAATACCGTTGACCC 121620 33 100.0 33 ................................. GCAATCGAGATAGTATTTCCATGCGTCACTACC 121686 33 100.0 34 ................................. TAGAACTTGTGCAACACGATAAGCATACTCAATA 121753 33 100.0 33 ................................. CCGTACGCACGAGTTTCGTATTACGGGTCAAAC 121819 33 97.0 34 ..........G...................... ATCTGGTGAAAGTCGGGCAGATTATACATGCGGT 121886 33 100.0 34 ................................. TACCAGTGCGATGTCACCTTGCAGGACGGCCGCA 121953 33 100.0 33 ................................. GAGAAAAGCGTAGCGTTCGTTCCGGCCAAATCG 122019 33 100.0 34 ................................. CTCAAACGCGACTACGAGATGCGTGACGGTGGAA 122086 33 100.0 34 ................................. AAGCTCGGCAACTTGGAAAAGCTGGAAGTCAAGG 122153 33 100.0 36 ................................. GTAGTTGATCACGTACACATGCGCAGGAATGCGCAG 122222 33 100.0 34 ................................. GCACTGCAAACCTCTTTGGAACAGGCCCAGCAGT 122289 33 100.0 35 ................................. ACCGAGTACTACAACGACAAGACGCTCGAATCGAA 122357 33 97.0 35 ........T........................ ATCGGCATCACCCTGTTGGCCATCTACGCGCTCGT 122425 33 100.0 35 ................................. TCCGGCTCGAATACGAATTGGAACTCGAAACCCTG 122493 33 100.0 33 ................................. CATGCGCACCATCGACGGGACGTTGAAGAACCA 122559 33 100.0 34 ................................. CCTATCGACGGGGCCGTCGCATTGCTGACCACGG 122626 33 100.0 34 ................................. CAAGGGCGTGCATGTGCCCGCCACCAGCGGCGAA 122693 33 100.0 33 ................................. AACATCCTGCCGGGCGAGACCTATACGATCACC 122759 33 100.0 34 ................................. TCGTGAAAGTGCGGATACCGCGCTCTCCAACCGC 122826 33 100.0 34 ................................. GGCAACGCCTACGTGGAACGGGGGCATATCGGCG 122893 33 100.0 34 ................................. ACGCCGAGCTCCCGGTCCCCCGTCGGCCCTGGTG 122960 32 84.8 0 ....................T.-A....A...C | ========== ====== ====== ====== ================================= ==================================== ================== 114 33 99.8 34 GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Left flank : CTGCGGGGAAGAGACGGTTGCGTAACGTTGCGAAGACATGTATGAAATATGGGCAACGGGTGCAGAATAGCGTATTCGAGTGCTCGGTCACTTCATCGGATTATCTAACTTTAATAAATGAAGTGATGAAAATCATGGATCAAGAAAAGGATAGCCTGCGCTTATATAAATTAGGGACAAAATATTCTGAGAAGATTGAACATTATGGTGTACAGCGGCATCTTCCTGTAGATGATGTGATGATGATTTAGACGCCGAGGCCTGTCGTTGTGCGAAGTGGAAGCTCTCATCGAATAAGGCAAGCTTCGCACCTGGATGGAACTTGGAATCGAAAAGTAAGTCGATTTTCCTTGGCTGTTTGATAATTTCAGAGAGAAGAATCGTTATTATTTTTTGGTAGAGTGATTAGAATAACGGGTTTTGACTTCAAACCCTGCTACTCTTGAACTTGTACGAAGGATAGATGTTCCACAATGTGAAACATGCTGTCCATCTGTGCA # Right flank : CATGATGAGAGCGGCCATGGGATTGCGTGAACGGCGTGAGCGTTGCGGGTTGACGTTGCTCCAGTTGGACGCGTTGACCGGTATCGCCTACACGCGGTTGAGCACGTTGGAGTGCAATGCGTCCGAGGCTCGCAACATGTATTTGGGTACGGCTCGGCGGATTGCCGACGCGTTGCATTGCAACGTGTTGGACTTGTATCCGGATGAGGATGCGTGGCGTGGCGGCGTGTCCGCCGGCGTGACCGGGTTGAGGAGGATTCGTCGGGAACGGCATTTGACGCAGCGGATGCTGTCAGCCTTGACGGGTATCCCCCAGCCTAATGTTTCTTGGTTCGAGACCGGGTATCGTCCTGTGTCTCAAATGTATTTGGATACTGCGCGACGCCTGTCGGAGGCGTTGCAATGTGACCCTGTTGATTTTCTAATTGATTGAAAGGATATTGTGATGAAGGCTGAGGTTGTTATTGTTACGAGGTTGGAGCGTCATGGCGGGACGATTC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //