Array 1 11175-12757 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSGP01000679.1 Streptomyces viridosporus strain NRRL 2414 NRRL_2414_contig_679, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================================================================================================================================================================== ================== 11175 33 90.9 28 ..............................CCC GACCGTCGTGCTCGTCGTCATCAGGCGG 11236 33 100.0 28 ................................. TCACCGACCGGGAGCGGCTGCTCGGCAC 11297 33 90.9 28 .............................GC.G ACCATGCGGCCGCACGGCCACCGACGTC 11358 33 90.9 28 ..............................CTG TCATCCCGTCCCGGATCATCCCGGCCGG 11419 32 90.9 28 .................-...........G..C TTGCCCCGGGGGAACCGCCCCGGGTGCC 11479 33 90.9 28 ..............................ATC CATCCGGCGGCCGCGGCCGCCACGACGA 11540 33 90.9 28 .............................TA.C CGTTCATCGACCGCGAGTGCCGGGCCCA 11601 33 93.9 28 ..............................C.A CGGCCTCGAGAAGTACCGGCTCGAACTC 11662 33 100.0 28 ................................. ACGTCGGCGACGGCGCGACGTGGCGATG 11723 33 90.9 28 .............................ACA. CCGCGCGGGCCTGAAAGGCGACGCCGCC 11784 33 90.9 27 ........................C.....CA. GATGCGCAGCCAGGCGGCCAGGTAGTG G [11813] 11845 32 84.8 28 ................-T...........A.CG GCCGGAATACCAGGTGTCGCCTGTCCGT 11905 33 81.8 28 .C............T..............ACAC GCGCGACGACGAACCACGGGTACGCCTC 11966 33 78.8 186 ..T...T.......T..............AACC CGCGGGGGCGGCCGATACCCGTCCGCTCGTCCTCCCCGCCGCCGCGGAACAGGGCTACGCCATCCGCACGGCGGGAACCTGTCGCCGGGTCCCCGTCGACTTCGACGGCCTTACCCTGATCCGTATGACCGCCGCACCAAGAGTAAAGGAAACGCAAAGTCCTTCTTAGGGTGCAGGTCAGAAAGT 12185 33 90.9 28 ..............T..............G..G CCGACGACGCGAAGGACGCGGCGAAGAA 12246 33 87.9 28 ..............T..............TC.G CGGCGTCCGCGACCTGCCACGAGCACCA 12307 33 90.9 28 ..............T...............C.C GATCGACGTGCTCGCCGCCCGCCTGTCG 12368 33 90.9 28 ..............T..............G..C CGAACTGCGTCCAGGGCCCGTCCAGGGA 12429 33 87.9 28 ..............T..............AC.G TCGGCGGCTGGGGCAAGTGGCTGTGGCA 12490 33 84.8 12 ...T........................AAC.C GGGGGCGTGGGG Deletion [12535] 12535 33 87.9 28 ...T.........................GA.A AGTGATCATGTCCGTACCGAGCATTCCC 12596 33 90.9 35 ...........................T..A.G CCGAGACCGAGGAGAAGCCCGCGCCGCGGTCCTCC 12664 33 69.7 26 C.G........ACC.......A..G...A..AC GGCATCTCCTTCGGCAAGGAGTCGGA CA [12692] 12725 33 72.7 0 C.G........ATC....A.......GT..A.. | ========== ====== ====== ====== ================================= ========================================================================================================================================================================================== ================== 24 33 88.4 34 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCTGT # Left flank : CGTCCAAAACGTCCAGGCCCTGCTCACCCCGCCCCACACGACCACAGCCGACGACGACACCGACGAGGAACACTCCGAACGGCGCGACGTACGCATGGTCCACCTCTGGGACCCCAAAGCCGGAGTCCTCCCCGCAGGCGTCAACTACGCCAAAGGAGAAGGCTGATGCCCTCCATGGTCGTCATCGCCACCACCGCGGTCCCCGACCACCTGCGCGGCGCCCTCAGCCGATGGACCAGCGAAGTAGTCCCCGGCATCTTCGTCGGCAGCGTCTCCACCCGCGTCCGCGACGAACTCTGGCACGCCGTCACCGAAGTCGTGGGTCTCGGCGCCGCCCTCCTCGTCCACCCCGCCGCCACGGAACAGGGCTACGCCATCCGCACCGCGGGAACCCGTCGCCGGGTCCCCGTCGATTTCGACGGCCTTACCCTGATCCGTATGACCGCCGCACCAAGAGTAAAGGAAACGCAAACCCCCTCTTAAGGTGCAGGTCAGGAAGT # Right flank : TTGGCGGGCGCGCGTTGCGCAGTTGGTGGTCTTGCCGGGTGTGCGGCTGCGCAGGCGCTGCGCAATGGCCTGTGCAGTGCTGTGGCCTGCGGTGGTGGGGTCCGTGGTCGGGGTTCTGGTGTCCGTGGTCGAGGGCTGTGTGAGGCCTGGCCACGATCCTGGCCATGGCTCTGACGGTGGTGGTCAGGGGTGCCGGGTATGCATTTCGGTGCCGCCGGTGCGCAATGGGCTGGTGGCTGCGCAGCCCGCCGTCTTGGTGTGCGCGGTGTGCTGGTCTGCGTGGTTGGGTTCGTGGTCGGGGCGGGGCTGCTTCTACGGTGGGGCGGTGGCGTGTGACCTTCCCAGGTCTTGTCCGTCACCGCCTCGCCGTGTTCCCGCCGGCACCCGGACGTCTGCCAGCTCGTCCAGCCGCCCGTCCTGCCACCCCGCCTCGTGCTCCTCGTACCTGTGTGGGGCGGTGGCATGGTGCCCCACCGCCCACCGGGCTTCCCCTGCCGCGC # Questionable array : NO Score: 4.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.42, 5:0, 6:0.25, 7:-0.71, 8:1, 9:0.13, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCTGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 31535-31927 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSGP01000175.1 Streptomyces viridosporus strain NRRL 2414 NRRL_2414_contig_175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31535 29 93.1 32 ....C.......T................ CACTTCGCGGAGCTGTTCCGCTCTGCTCTGGA 31596 29 96.6 32 ............T................ CCCGACGCGCGCCCCGACGTGGTGCTGTGCGG 31657 29 96.6 32 ........G.................... GCACCTACGACAAGCGCGAGAGGAAGTGGCGT 31718 29 100.0 32 ............................. GTCGCCCAGATGATTGCCCTGCGTGCCGTCGG 31779 27 93.1 32 ...........--................ CCGTCCGCCGTGCTCACCACCGTCACCGGCGA 31838 29 100.0 32 ............................. AACTGCGGCATCTCCTTCGGCAAGGAGTCGGA 31899 29 75.9 0 ............TT.A.....G..T..TG | ========== ====== ====== ====== ============================= ================================ ================== 7 29 93.6 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : TGTGACGGCTACCGAGCGGCGGCGGTAGCTCATCGCGATACCTTCGCCTCGATCGGGATCGACGCCGAGCCGCACGCCACTCTGCCCGACGGCGTGGAAAAGCTGACCGCGCTGCCCGAGGAGCGAATGACCCTGACCCGGCTGGCCATCACCCACCCTCGCGTCCACTGGGACCGGCTGCTGTTCAGCGCGAAAGAGAGCGTTTACAAAGCGTGGTTTCCATTGACCGGTCGCTGGCTGGACTTCACGGAATGCATCATCACGCCCGATCCGGAACGTCACACCTTCACGGCCGACCTGACCGTGCCCGGACCGGTCGTCGCCGGAGACCGGATCAGCCGGTTCACCGGACGCTGGCACGCCGGGGGTGACACTCGACATGTCATCACCGCCGTCACCGTGCCGTGGCCCAGGGCGGTTGCACGTTCCGGGGGCGTGCGGCTGGTCGGGGTGTGACCGGTTGGGGTGCATAACGGGGGGAGCGCTCGGCGTCGTACTCG # Right flank : GCAGTTGGCGGGCGCGCGTTGCGCAGTTGGTGGTCTTGCCGGGGGTGTGGCTGCGCAATTGCTGCGCGTTCGGCTGCGCAATTGCCTGCGCAGTGCTGTGGCCTGCGGTGGTGGGGTCCGTGGTCGGGGTTCTGGTGTCCGTGGTCGAGGGCTGCGTGATGCCTGGCCACGATCCTGACCACGGCTCTGACGGTGGTGGTCAGGGGTGCCGGGTATGCATTTCGGTGCGTCGGTGCGCAATGGGTTGGGGGCTGCGTAATCCGCCGTCCTGGTGTGCGCGGTGTGCTGGTCTGCGTGGTTGGGTTTGTGGCGGTTCGTGGTCGAGTATGGGGCTGCTTCTACGGTGGGGTGGTGGCGTGTGGCCTTGCCAGGTCTTGTCCGTCACCGCCTTGCCGTGTTCCCGCCGGCACCCGGACGTCTGCCACCTCGTCCAGCCGCCCGTCCTGTTATCCCGCCTCGTGCTCCGCATGCCTGCGGGCGGCGGCATGGTGTCCCGCCGC # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 287-1439 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSGP01000140.1 Streptomyces viridosporus strain NRRL 2414 NRRL_2414_contig_140, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 287 28 96.4 33 C........................... ATCACTTGGAGGTCGAACTGACCGGCGCGGCCG 348 28 100.0 33 ............................ CTCCGCTGCTGTCATGGCGGCACAGTGTGGGTG 409 28 100.0 33 ............................ AGCGCTCGGAGCTGCTCGCGCTGCTCCGGCCTG 470 28 100.0 33 ............................ CTCGCGGAGCGTCTGGTGTCCGCCGCCCCGTTG 531 28 96.4 33 ............G............... CTCGGACCCGCTGACGTCCCCGAGGTCAAGCTG 592 28 96.4 33 ...............T............ GGCCAGCCGCTCCGCGCGGGTCACCGCTTGTCC 653 27 92.9 32 .......T............-....... ATCGGTGCGTCGTCGCCCTGCCCCGGCTCGGG 713 27 89.3 33 C.........T.....-........... GAGGGCGCGACTGTGCCTGTGCGCGCTGCATGG 773 27 89.3 33 ...........A....-......C.... AACGAGGACAGCATGATCGATGCCGTGACTCCG 833 28 96.4 34 .....T...................... GCATTCGCGAGGTCGGCCGCATTCGTAGCGATGT 895 28 89.3 33 C.TC........................ CAGATCCTGGGCCCCCTCAGCGAGTGGCAGCTG 956 28 92.9 33 .G..............A........... GAGGTCACCTCGGAGCGGCTCGGAGACTGGGCG 1017 28 100.0 33 ............................ GTCAGCACCTCTTTGATGACCCACTTGGTGACG 1078 28 85.7 33 .T......A.........T....C.... AAGAAGTTGCGCGCCTGGATCGACCAGCACCTG 1139 28 89.3 33 ...........T...........C...A CCGTAGTGCGCCCGGCCGCCGCCGTGGCCCTCG 1200 28 89.3 34 .......T...A.A.............. TGCGACAACAAGGTCGCGTACAACCGCCTTGCGG 1262 28 92.9 33 ...........T...........C.... GTGGTGCCGGTCTCGGCGGAGATTCGGGCGCTG 1323 28 100.0 33 ............................ GTTTGCAGGATCTGGGTTGCGGTGCGCATAGCG 1384 27 89.3 1 .......T.............-...A.. C C [1408] Deletion [1412] 1413 27 71.4 0 GTAGTG.A........-........... | ========== ====== ====== ====== ============================ ================================== ================== 20 28 92.9 31 TCCTCCCCGCCGACGCGGGGGTGTTCCG # Left flank : GGTGACGGACCCCAGGGGTCCGTCACCTCTCGCGCGCAAACGACCCCCGCTGGCCGAACACGTTCTGCACAGCCGGATCACGCCGCAGGACGAGATATCCGGCTACAAGCCGATGATGCCGACCCCACGCAAGCGGAAGTGACCCCGCCCTCACTGCTGCACCGGACGCCACGCGTCGCCTCGAACGTATCGACATATGAGGACCTGGGCATACAGCAGGGCCCCAACAACACGCTCGTGTCCTCCCTCAACAAGCCGGCCAGATGGCCCGCCCCTCCAAGACTTGC # Right flank : GCTCGGTAGGGGCCGCAGTGCCTCTCCGGCAGGAGGTGGCCCGCTGCCGACGCCCCGAACCTTGCCCGCCTCCACGCGTCCCGCCACCATGAACACACCAGGACACAACACGAGGACAGGGGGCAGTATGGACTGGCCCAAACCGCCCGTATCCACCAACCCGTTCCTGCCTCCCCCCGAGCCTCCACCTGCCGCGGCGTCAAGCAAGACCCCCGCCCAGGCCCGACAGGAAGCCAACACCGGCCGCCACGCCGTCAATGCCGAGCACCACCGCCGTGCCAAAGCAACCCGTCGGCGAGCCGCAGCGCAACGCAAACGCGAAGCCGAGGCGGTAGCCCAGGCAGCTGCCGGCAGCAGGAAACCCCCCGTCGTCCACGTCAGCCAGAACATCCGCACCGTCTCCGCTGGACTACCCGGCCTCGGCAAACGACGCTGACCACACCCAGGCGAGGCCGGAGCCGCCCAACCCCGATCACTGACCTGTGCCTCCGTTCTCCCCG # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.14, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTCCCCGCCGACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCTCCCCGCCGACGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.50,-6.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [7-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1925-4983 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSGP01000140.1 Streptomyces viridosporus strain NRRL 2414 NRRL_2414_contig_140, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================================================== ================== 1925 33 72.7 68 C....T.T.C....T....A.........AA.G GCGCTGGTACGTGGTAGCTCGAAACCACGTCCTATCGCAGCACGATACGACAGAGGTTGGGGTTCATG G [1928] 2027 33 87.9 28 .....T...............A.......GA.. CAACGGCGTACGGGAAGTGCTGGCCGGG 2088 33 93.9 27 ...................A.........T... GCCCAGTGGCGAAGGGGCCTGACGCCG G [2117] 2149 33 90.9 28 .............................AG.C CTGTCTCCTCATGGACCTGATCACCGAG 2210 33 93.9 25 ........................A....T... CCAGCCAGTGCAGGACGTACACCCC 2268 33 84.8 27 .............T..........A....GTC. ACGGCGGGAGCCGACCGTGTGGCTGTC G,T [2271,2273] 2330 33 84.8 28 ...T.........................GAAG CGCTCATATCCCGGCGCTACCTCAACCA 2391 33 90.9 28 ...............A...........T....G GGGCAGTCGTCGTGTCGCTGAAGACCGT 2452 33 90.9 28 ...T.........................T.C. TCTGGGCGCGGCGCAGCTGGGCCAGGGC 2513 33 90.9 28 ......T.........T..............C. TCGGCACGGTCATCTTGGATAGTTCTGG 2574 33 84.8 28 ..T.....................C....GA.A CCGCGGAGTCGGGCGGGCGTACCCAGTA 2635 33 90.9 28 ..TT....................C........ ACACCGCCTTCGCCAGGCCGTACGCCAG 2696 33 90.9 28 ........................C.....T.C CCGGCGTGAGCGAGGGAATCCACCCGAT 2757 32 87.9 28 A....................-.......A..A ACCCCGACGCCGTCGTCGACGGCGCGTG 2817 33 90.9 28 .............................TA.A CCGGGGACCCGGTCATGATCTCGATGAG 2878 33 97.0 27 ..............................A.. AGGAGCACAGCGGGCACCCTCCGTGCC 2938 33 84.8 28 C........A...................GA.C GGGACCTGGACGAGGAGTACGGCGTATC 2999 33 81.8 27 ..T.C..T..................T....AC CGGGCAGCACCCCTCGGACCAGGCCGG G [3029] 3060 33 90.9 28 .C..........A...................A ACGGGCGGACCAGCTGGTACACGCCGTC 3121 33 81.8 28 .........T.T.................TACC AGGGGACGCCGATGCCCGTCGGCCTCCG 3182 33 84.8 28 ...T....................C....G.CC TCGGCATCAAGAGCCCGAGCCGGGTGGT 3243 33 97.0 28 .......T......................... GTTACCGGATCCCGTGCCCGGACCCCGT 3304 33 84.8 28 ........T........A............GAG ACAGCCACCATGGCTCAGACCACGTCCG 3365 33 90.9 28 C............................A..G TCGACAAGGACGGCACCGTCACCGCCGC 3426 33 97.0 28 ..............T.................. CTTTGTGGCCCTGCTTCTTCAGCGTGCG 3487 33 90.9 28 ........................C.....AC. ACCGGTTCGCCCCGCCGAAGATCGGCGG 3548 33 93.9 27 .............................T..A TCATGCGTTCCCAGAGCTGGACGAGGC G [3577] 3609 33 100.0 28 ................................. ACTTGTCGCCCAGGCGCTCGAGGCTGGT 3670 32 84.8 28 .................-A...........TCC GAGGACTCCTCCCGGAGGCCCTGGAGCT 3730 32 90.9 28 ........-.T.....................C CGCGCAGGTGGCAGGAGGTACCCAGGTG G [3759] 3791 33 93.9 28 .............................A..A GGGAGACGACGATGAGGGCCAGGGTGAC 3852 33 93.9 28 .............T...............T... GGGCCTCGCCGGTCTCCTTGAGGATGGG 3913 32 81.8 28 .....T...........-...........TACA AGCGCCGCGCCGCTGCCGCGGTCGACCC 3973 33 84.8 28 ..............A..............GTCA GCAAGGCGCTCGGCGAGCTGTTCAAGCA 4034 33 87.9 28 .C..........A...........A.....G.. CCGGGCGACGGCCCAGGTTCTTCCCGTC 4095 33 84.8 28 ..T.....T........A............GC. ATGTGATGATCCCGGCGGGTGTGGCCGC 4156 33 93.9 28 ...............................CA GCTCGCGCAGGTAGGCGTCGTCGGACAG 4217 33 90.9 28 ........................C.....T.A CGACCGCGCTCCTGCTGCGCATGCGGAG 4278 33 87.9 28 C............................AT.C TGAACCGCGCGCGGCCGTCCTCCAGTCG 4339 33 87.9 28 C............................TT.A ACGGCACGGACGTGTTGCCGGTGGCGGC 4400 33 90.9 28 .............................T.CC CGACGGCGACGAGGGGCACGGCGTGAAG 4461 33 87.9 28 .............................GTCC AGACGCAGGTGTATTACCGCGTCGCCAC 4522 32 93.9 29 ............................-T... GGCCGCACCATGCGAGGTGTTCGATCTCT 4583 33 90.9 28 C............................A..A ACCAGAGGGTGCGGCATCGGGGGTTGCA 4644 33 90.9 28 .............................AA.G GATGGGTGGTCCAGGATCAGGAGTACAG 4705 33 93.9 27 ...................A............C CGAGCTCGTGGGTCTCGACCGCAAGAC T [4735] 4766 33 87.9 31 ..........................T...GCC AGCCAAGGTCGAGCCCGACGTCCCCCTCCCG 4830 33 84.8 28 .C.....................A.....T.CC GCATCTCCGCCGCGAACTTGCGGGCCGC 4891 33 90.9 28 .....T...........A...........A... TACGGACCACGGTGTCGAAGGTCTTGCC 4952 32 84.8 0 ...T....T........-...........T.C. | ========== ====== ====== ====== ================================= ==================================================================== ================== 50 33 89.3 29 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGT # Left flank : ACGCGGGGTGTTCCGCTCGGTAGGGGCCGCAGTGCCTCTCCGGCAGGAGGTGGCCCGCTGCCGACGCCCCGAACCTTGCCCGCCTCCACGCGTCCCGCCACCATGAACACACCAGGACACAACACGAGGACAGGGGGCAGTATGGACTGGCCCAAACCGCCCGTATCCACCAACCCGTTCCTGCCTCCCCCCGAGCCTCCACCTGCCGCGGCGTCAAGCAAGACCCCCGCCCAGGCCCGACAGGAAGCCAACACCGGCCGCCACGCCGTCAATGCCGAGCACCACCGCCGTGCCAAAGCAACCCGTCGGCGAGCCGCAGCGCAACGCAAACGCGAAGCCGAGGCGGTAGCCCAGGCAGCTGCCGGCAGCAGGAAACCCCCCGTCGTCCACGTCAGCCAGAACATCCGCACCGTCTCCGCTGGACTACCCGGCCTCGGCAAACGACGCTGACCACACCCAGGCGAGGCCGGAGCCGCCCAACCCCGATCACTGACCTGTGC # Right flank : TCGGTGATTGCATCCAGCTTCCGCGCACACGGAAGAAGGACTCATCGACCGGCTTGTACTCCTCTTCGGCATGCACGGATCCGTCAACCTGTCTGAGGACAGGTGTCGTTGGCCAACGAACTCTTGCGGCTTCGTGTACGAATCCCTAAGCTGCTCATCGTATAGATTCGTCCACGAATCTTCATGAAGGGGGCCTCTAATGGATCACTCAGCGCTGCGTGCGGCTGTCGTTGCCGCGCTCGCCGACGTCGAATCCCTCAACGCCAAACTCCACGGGCTGCTCGGGGAGATCGATGGGACAGACACCGCTGTCGACCTAGGGCGCCAGGGGCTGTGGACTAAGGCGCAGGTAGCCCTGCTGTGGAGCAAGACGAACCACCTTCCTGGGGTTCGCGCTCTTTTCGAGGCGACAGCCGAGCGCCCTGGTGAAAAAGTGACGTTCACGGAGATTCTTCAGCGCTCCGGGCTTCCAGAGCGTCAGCAGAGCAACGAGCATGCAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.48, 5:-1.5, 6:0.25, 7:-0.01, 8:1, 9:0.04, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [29-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 3 5702-6547 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSGP01000140.1 Streptomyces viridosporus strain NRRL 2414 NRRL_2414_contig_140, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================ ================== 5702 28 75.0 33 ...A..T.T..A...T..AA........ GCTCTCGGAATCGCCAGTCCCTCGAAGGTGATC 5763 28 89.3 33 ......T..T.............A.... TGCCATGACCTGAGCCGCTGCGCACGCGGGCGG 5824 28 89.3 92 ........T.......A...A....... GATCTCGGCGGAATCCTGTACGAGACCGGTGGGCCCTCTCCATCAATGTGGGGTGTCCGGGCACGCTGCGGACCGTGACGACGTAGCTCCTG 5944 28 96.4 33 .......................A.... TCGTTCTGCTCGTCCGTGAGCTGGACGGCCGAA 6005 28 96.4 33 ...A........................ AACTCCTCGTCGTGCCAGGCCACGCCCAGATTC 6066 28 96.4 33 ..T......................... ACGCCGGAGCCGCGGGACCTACCCGGCACGGTG 6127 28 85.7 33 ..T........A...TA........... TACGCGATCCCGATCGGCGCGGACGGGCAGATG 6188 28 96.4 31 .......................C.... CGCACACATCGGCATCCTGACCGGGCGCGGG 6247 28 96.4 33 ..T......................... TCGGTGCTGCTGCGCACGATCCTCGCCCCGTAC 6308 28 96.4 33 .......................C.... GAGACTGCGGAGTCGGGCGGGCGTATCCAGTAG 6369 28 85.7 33 .TT....T...............C.... TAATCCGCCAGGCCGGGAATGCTGTCCGGGCCA 6430 28 100.0 33 ............................ ACCAGCGCGCCCGCCGTCTTCAGCGCCTTCTCG 6491 28 71.4 0 ............T.TTCA.C.CC..... - T [6517] Deletion [6519] 6520 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================================================ ================== 14 28 91.1 35 TCCTCCCCGCCGACGCGGGGGTGTTCCG # Left flank : TGCGGCTGTCGTTGCCGCGCTCGCCGACGTCGAATCCCTCAACGCCAAACTCCACGGGCTGCTCGGGGAGATCGATGGGACAGACACCGCTGTCGACCTAGGGCGCCAGGGGCTGTGGACTAAGGCGCAGGTAGCCCTGCTGTGGAGCAAGACGAACCACCTTCCTGGGGTTCGCGCTCTTTTCGAGGCGACAGCCGAGCGCCCTGGTGAAAAAGTGACGTTCACGGAGATTCTTCAGCGCTCCGGGCTTCCAGAGCGTCAGCAGAGCAACGAGCATGCAGCTTTTAGCCGCATCTCCGCACAGCTGTTCAAGGAGAAGCGCTGGCCCATCGAGAACAGCCAAGGCAGTTCTGACAGCACAACCGGTAAGGCCGAAATGCTCTACTGGATGGACAGCCGCATCGCCACATGGTGGCGCGACATCACGCAGTGAGACGAGCCTGAAGGTGAGGCCCGGCGACCACAAGCCTGCACGTTCTCATCGCTCGCCAGCCTGCCCG # Right flank : GGTGATCTCGACCTCGCCGGGCGCGGTGTACTCGTCCTCGTCCCGGGTAGCCGCCGGCCACTCGACGGGTTATGGGGCCGGCTCGTAGGTCACGGTCTGATCCGGACAGCCGACCACCGTCTCGTGCAGGGCTGCTACCTTGGCTTCGTCGGCCGTCAAACTCCAGCGGAGTTTCGTGGCCACCCACTCAGCGGCATACCGGCAGTGCACCCCGGCAGCGGGCGGCAGCCACTCGGCGGAGTCCTGATCTGACTTGGACCGGTTCGAGCGGGCGGTGACAACCACCAAGGCTGGCGTCGGCGCCCTGGTCGTTGGCGTACGCCTCGCGACGCTGCACCGTCCACGCGGACGCCCCGCTGCCCCAGCTCTCCGCGAGGGGCACCATGTGATCGATGTCGAGGCCGGAGGCCGACGTCACCCAGACCTGGTCGTAGTACGAGCACCAGCGCCCGCCCGACAGACGGCAGCCGGGCCCGACCACGGGGGGGGCGACGGCCTCG # Questionable array : NO Score: 4.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-0.58, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTCCCCGCCGACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCTCCCCGCCGACGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //