Array 1 3059289-3057385 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032490.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SL26 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3059288 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 3059227 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3059166 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3059105 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3059044 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 3058983 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 3058922 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3058860 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3058799 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3058738 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3058677 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3058616 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3058555 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3058494 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3058433 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3058372 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3058311 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3058250 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3058189 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3058128 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3058066 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3057963 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3057902 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3057841 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3057780 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3057719 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3057658 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3057597 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3057536 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3057475 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3057414 29 96.6 0 A............................ | A [3057387] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3076913-3075420 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032490.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SL26 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3076912 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3076851 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3076790 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3076729 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3076668 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3076607 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3076546 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3076485 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3076424 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3076363 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3076302 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3076241 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3076180 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3076119 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3076058 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3075997 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3075935 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3075874 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3075813 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3075752 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3075691 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3075630 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3075569 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3075508 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3075447 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //