Array 1 45114-43758 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYQZ01000010.1 Streptococcus agalactiae strain GCH46 10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45113 36 100.0 30 .................................... TCGTAAAATGATAAGTAATACAATAACACT 45047 36 100.0 30 .................................... TTGGAAAGATGGCAGAGGGGTTAACGCAGC 44981 36 100.0 30 .................................... TTTTGAGTTTTCAACTTATAGAGTGTATTT 44915 36 100.0 30 .................................... ATGGTCAGAAATCGAAGAAAACGAAGTCGT 44849 36 100.0 30 .................................... AACTAAACAAACGCATTGTGTTTTTAGCTT 44783 36 100.0 30 .................................... TTGAACGGTCCAAGATTTTTCATCACTTGT 44717 36 100.0 30 .................................... CTTAAGCTTGATTATAGTATATCACCATTT 44651 36 100.0 30 .................................... TTGGAAAAAACACGAAAGTGATATTACTTT 44585 36 100.0 30 .................................... TAAGAATTTTAGATACTCTACTTGAATGCT 44519 36 100.0 30 .................................... AAGACTTAAAATCGATTAGAATTGATTTTA 44453 36 100.0 30 .................................... CCAGTTTAGAAACAGAACAAAACTAACGAA 44387 36 100.0 30 .................................... AGACAAAGAAGATGGCAAGTCTATCAACAA 44321 36 100.0 30 .................................... AGTAGAAACATAACGATAATTCCATGAATA 44255 36 100.0 30 .................................... ATGTTGTAGAATCATATCGACCATATAACC 44189 36 100.0 30 .................................... ACAAGAAACAAACAGCCTTGATGACTTAAT 44123 36 100.0 30 .................................... GGGTCCAAATCAGCAATCTATGCTAAAAAT 44057 36 100.0 30 .................................... CAACCCTATGTTTGATAATATTTTAGACGT 43991 36 100.0 30 .................................... AAGTGAAGTTGAATTTTATTTGAGATACTA 43925 36 100.0 30 .................................... TTCTATCTTCTGAAGATATTTCACAAGTGA 43859 36 100.0 30 .................................... TCTTCTTTTTAATTCTTCTAACACTCCATC 43793 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGA # Right flank : ATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //