Array 1 893615-885666 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027417.1 Oligella urethralis strain FDAARGOS_329 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 893614 28 100.0 32 ............................ ACCGCAATGGGTGGGTTAAATTATCATGAATA 893554 28 100.0 32 ............................ AAAAGCCGCTAGCGCGGCGCTAACGGCTTTAT 893494 28 100.0 32 ............................ AACTCCTTGGCCTCCTCCTCATTTAGTTCATA 893434 28 100.0 32 ............................ TACCGATGGGGATCAGATCGTCTTTGCCGCTC 893374 28 100.0 34 ............................ CCGTTAAAGGCGTTGTGTTTGATGTGCCTGCTGT 893312 28 100.0 32 ............................ ATTGGTGTGATCAGAGTGATTGATTGAGCCAT 893252 28 100.0 32 ............................ ACACTATCTCATCATGACAAACTCGAAATGAC 893192 28 100.0 32 ............................ AAAGGGTCAGTATGACATCCGCTTTAGAAAAG 893132 28 100.0 33 ............................ TTTTCCCTAATTAAATGATTAGATTTAACATAG 893071 28 100.0 32 ............................ ATCTTATTTATATCTCGTGAGTACTGAAACTT 893011 28 100.0 32 ............................ TGCAAATGCAGGGTTTTTTATTTTCCGAAGAA 892951 28 100.0 32 ............................ TCTAGCAACGTGATCAGATCCTCTTTGGATAC 892891 28 100.0 32 ............................ TGATCAATCTCGAAATTGAGGGTATCGACGGC 892831 28 100.0 32 ............................ TATGGATACTGGGAGACTGAAACTAGATATGT 892771 28 100.0 32 ............................ GATCCGATCCAGTGCTGATATTCCCATTGCGG 892711 28 100.0 32 ............................ GGACGCTGTTGGCGGTGAGCCAATATCCACCC 892651 28 100.0 32 ............................ TGATTCTTTGGCAGTGGTGGCGGACAAAAAGC 892591 28 100.0 32 ............................ TTGCCAAGCGGGTAAAAGCCGCCAATATTTCC 892531 28 100.0 32 ............................ GTCTGCGTTGGGCTGCTTCTCAACCTTTGAAT 892471 28 100.0 32 ............................ ATCATCTGGCGCCATAATTTCTTTAAGTGTTG 892411 28 100.0 32 ............................ ACATGGCGCGACGTTATCCGCGAGCCACGCCG 892351 28 100.0 32 ............................ GCCTCCTGCAAACCCAGAAACAAACCCACCAC 892291 28 100.0 32 ............................ AACAAACATTTTCTAAAGTCCTTTCTGAAAGA 892231 28 100.0 32 ............................ ATATCTCTTAATCTCGTGAGTAGCACAAAACC 892171 28 100.0 32 ............................ CCACAGCACGCTTGCCATAACCCTTAAACCTA 892111 28 100.0 32 ............................ CAAACGCCCAATAATTAGCACCTTATTTAAAC 892051 28 100.0 32 ............................ TTGTAGGTCAAATTGTTAAATTTGAAAATGGA 891991 28 100.0 32 ............................ AATGTCGATACTCAAACCATCAAATAAGTCAT 891931 28 100.0 32 ............................ ACATCACTTGTAGCCAGTAATTTGTTGGTACT 891871 28 100.0 32 ............................ ATTTAAGATTCGCACTGATTTTTTATCATCTC 891811 28 100.0 32 ............................ TGTAGATTTATGTATTCCGCTGACTCAGCAAT 891751 28 100.0 32 ............................ GATTGGAAATCGGCTTATGAAAGCTTAGCGCC 891691 28 100.0 32 ............................ TTGCATCTTCCATACTAAATGTCGCAACATGC 891631 28 100.0 32 ............................ TGCTGCCAAGATTCGATTAAGCCACGCAACTT 891571 28 100.0 32 ............................ GTTCAGCGCCCCATTGGATAGCTACTAAGATA 891511 28 100.0 32 ............................ ATATGGTGACATCACCCACTGGCTACCCATTC 891451 28 100.0 32 ............................ TGAAAAAGAAAAAAGGGAAGAAACAGACCAAA 891391 28 100.0 32 ............................ CTATACTGGGAAAAATATTACTTGCTTTATTT 891331 28 100.0 32 ............................ TGAAACAGGTATCCGAATAATTGCGTTAGCTT 891271 28 100.0 32 ............................ TTAGCATTGCCGTATACCCAAGCTTTGTCATA 891211 28 100.0 32 ............................ AGCTTAAACAATCATTCGCAAAAGTCGATCAA 891151 28 100.0 32 ............................ TCTTGCACTACGCAAGGGGCTTTTTTGTGCCC 891091 28 100.0 32 ............................ CGAGAGCCCGCGCATTTGCATTGCGAAGAACT 891031 28 100.0 32 ............................ TTGACCGGTTCAAGGCGCTACGCAAGTATCTT 890971 28 100.0 32 ............................ TTAAGTGGCTGCGTGATAAGTACGGTGCGGAT 890911 28 100.0 32 ............................ GTACCACCGTAACAACAGTTTGAAAGGAATAT 890851 28 100.0 32 ............................ TTAGCATTGCCGTATACCCAAGCTTTGTCATA 890791 28 100.0 32 ............................ TCAATCCCCCCAATAACATATAACACAGGTAT 890731 28 100.0 32 ............................ GCAAGGATCGAGTAATTGAAGTTTTAACTGCT 890671 28 100.0 32 ............................ ATTAAGTGGTGGCGCGTAGTATGACCCCATGT 890611 28 100.0 32 ............................ AGAATGGTGGCGACAGGCAACGCCCAAGCAAC 890551 28 100.0 32 ............................ TAACGCCGATCCAAGCCGGACGCCGAATAATG 890491 28 100.0 32 ............................ GCTAGGTTGGAAGCGGTTAATTGCCTTAGCTA 890431 28 100.0 32 ............................ ATGAAAATCATCTTGAAGTAGAAGATGATTTA 890371 28 100.0 28 ............................ ATGGCAATTCCCTCATTAAGTAAGTAAG 890315 28 100.0 32 ............................ GACGATAGCGGGCGTTTTTTCTGAAATTGATT 890255 28 100.0 32 ............................ TTTCGTCGTTGTTTTTAAGTTAGCTAAGGGCG 890195 28 100.0 32 ............................ ACTTGCAAAGGCTTGATGAAACCAACATCAAG 890135 28 100.0 32 ............................ TTGGACTCACACTTTACAGTGCTGTCTTTCAT 890075 28 100.0 32 ............................ GTTACGCTAGTTGCCGGGTGCTTTTTTCCGAA 890015 28 100.0 32 ............................ TCCCCCCAATAACACAATCATACACGATTATC 889955 28 100.0 32 ............................ TCGCAAGTCCTTTGTAATCCTCGACAGTAAAA 889895 28 100.0 32 ............................ ATTCGCTCATTTCTTTTTGTTAGATAATAAAG 889835 28 100.0 32 ............................ AGTTATCGAGAAGTTGATGGTAGAAATTAATC 889775 28 100.0 32 ............................ TTGAAGCGCGTCTTGCTGATACGACCCGAGAG 889715 28 100.0 32 ............................ AGTTATCGAGAAGTTGATGGTAGAAATTAATC 889655 28 100.0 32 ............................ TTGAAGCGCGTCTTGCTGATACGACCCGAGAG 889595 28 100.0 32 ............................ CGATACTTATCGGGCAGCCTTGCCTTGATACG 889535 28 100.0 32 ............................ TGCAATATTGCCAAAGGTCTTAAGCTTGGCGC 889475 28 100.0 32 ............................ ATCAGCCGGGGCGCTAAGCGCCCTAGTTCAGC 889415 28 100.0 32 ............................ AAGATGACGCAAGAACGTGAAGAGAACAACCA 889355 28 100.0 32 ............................ TGATAGCGCCGCTTCATCTGGCTGGGTTGCAT 889295 28 100.0 32 ............................ TTGGCCTTGTTTTCCGCAAAGCAAACTTCTAT 889235 28 100.0 32 ............................ TTGCATCTTCCATACTAAATGTCGCAACATGC 889175 28 100.0 32 ............................ TCAAAGGTTTGCGTACGACTGAAGAAGTCCGC 889115 28 100.0 32 ............................ TCCAAGTTAGAGCGCCAAATACTTGTTTTGAC 889055 28 100.0 32 ............................ AGTTCGACTTTGTCATCAACGTAGGGCTTGGA 888995 28 100.0 32 ............................ CTTGGGGACTACATCAATCTTGATGATTTCTT 888935 28 100.0 32 ............................ AAAGGAGTAAGCAAAATGTTTACATACGCCGA 888875 28 100.0 32 ............................ TTAAGCTAATGTCGCGGTTGCCTCATCTAAAA 888815 28 100.0 32 ............................ TTGGGTGTCAAAGCTTCGTACATAATAAAACC 888755 28 100.0 32 ............................ TTGCACCTAGGAACTTATGAACACCCTCATTA 888695 28 100.0 32 ............................ GATGAATACCGCATTTTAATAGCAGAATAAAC 888635 28 100.0 32 ............................ AGGACCGTTTGCGGGTCGTCGTCGTGGTCAAG 888575 28 100.0 32 ............................ TGCCCATGCGGGTTTAGCTTTTTAATCGCTGA 888515 28 100.0 32 ............................ TCCCGCTTGTTCGATGTGCTCCAGGACCGTTT 888455 28 100.0 32 ............................ CCCGAGCCGTTCGACGTGGCACCGGGCGGCAA 888395 28 100.0 32 ............................ TTAACGCTTCGCTGAGAGCCTTTGCCCATGCG 888335 28 100.0 32 ............................ TCCATAAATGTAGGGGCGTTTTTAAGCAAAAA 888275 28 100.0 32 ............................ TCGTGGTCAATATCAAACAATAGGCAGTTAAT 888215 28 100.0 32 ............................ CTCCACAATGGAGTTACAAATGATGTTATTGG 888155 28 100.0 32 ............................ ATGCACACTACGGCTATCAACTGATAGCACCA 888095 28 100.0 32 ............................ ATCAGCCGGGGCGCTAAGCGCCCTTGGCTAAC 888035 28 100.0 32 ............................ TTTGTTAACGTTCGGGTACTATCGTACCACAC 887975 28 100.0 32 ............................ AATTGCCCTCAGTGGGGGCGCCAGCCCGTTAC 887915 28 100.0 32 ............................ ATATTGCGTCCGTCTCAGCTAAGTTATCGCCA 887855 28 100.0 32 ............................ ACCTACCCGCGGAGGATATCGTCATGACATTA 887795 28 100.0 32 ............................ ATAGTTAATTATTATTCAACTATTTCCAAGAA 887735 28 100.0 32 ............................ ACTTAGCCACGCTGTTGGCTGTATGACGTACC 887675 28 100.0 32 ............................ ACGAGCGAGTCAAAGAGCATATCAAGCTGCAA 887615 28 100.0 32 ............................ TTTTTCCTGAGCATGAAAGGGTATATATCATG 887555 28 100.0 32 ............................ AGCACCTGCACGACACCGCGGTGTATGTAGAC 887495 28 96.4 32 ..........T................. TCGTCAAATTTTTTTGCGTTTTGCAGGATCAT 887435 28 100.0 32 ............................ TAAATAAATAGATAAATAAATAAATAAATAAA 887375 28 100.0 32 ............................ GTTAAAATTAAACATCATAAACTCCTAAATAA 887315 28 100.0 32 ............................ TCAAATTGAGATCAAACCCACGGAGTAAAGAC 887255 28 100.0 32 ............................ CCCTGTTTTTGGATATAACACATTTGAGAGGT 887195 28 100.0 32 ............................ AATCATATTTGACTTTTTACAACTTGAGAAAT 887135 28 100.0 32 ............................ AATAAATAGGTCTAGTGTCGCCAGTAGCAGCG 887075 28 100.0 32 ............................ GTTTTTATCGGCGATTGGTAAGAGTAAGGCGA 887015 28 100.0 32 ............................ ACTACAAAAGAAGCTAAAAAAAGATGTGGCTT 886955 28 100.0 32 ............................ TCGAAAGCGTGCTACTGACCGGCAAGATGGCG 886895 28 100.0 32 ............................ GTACTTGTCCTTTAGATTTAACAAATCGTGCG 886835 28 100.0 32 ............................ TTTAACGCCACGTCCAACGCAGACCTGAAAAA 886775 28 100.0 32 ............................ TTGATTCTTTGGCGTTTGCTGAAATGCTCGCT 886715 28 100.0 32 ............................ ATGGTAGTGCACGCTGCCAGAAGATATACTAA 886655 28 100.0 32 ............................ GTGCATGATGATCTCGCCGTCTTGCAGGGCAG 886595 28 100.0 32 ............................ ATAACCTAAAACAACGGTTTAAGCTAGGTTTA 886535 28 100.0 32 ............................ ATTGTCGGATCTGCGGAACAACGGCTTAAAGC 886475 28 100.0 32 ............................ ATGTACTGGTTGCCACACGCTTTGGCGCAATA 886415 28 100.0 32 ............................ ACGCAAGCAACGGGTGCTTTATATTTCATCAC 886355 28 100.0 32 ............................ TATTATCCTTATATCAGTTAAGAGGCGCCTAT 886295 28 100.0 32 ............................ ATTGAATTCAAAACTGCTGAACAAATTTCTCA 886235 28 100.0 32 ............................ TGTTGATATGTTTTAGTCGCAACTGCAATATT 886175 28 100.0 32 ............................ AAACTGAAAGTACGGGTTCGACCCCCGTTGCC 886115 28 100.0 32 ............................ CACTTCATACGCTCTTCTTGCTCTGGCGTTAG 886055 28 100.0 32 ............................ GCTTGCAAATGGGATTCAGGAAACCTTGGCGT 885995 28 100.0 32 ............................ GCCACTAAGCGTCGTGCCGTGCCGGATGTCAT 885935 28 100.0 32 ............................ AAGGTAAGGTGGATCATTGCTGAACACGCTAT 885875 28 100.0 32 ............................ AGAGCGCCCGCCCGTTACACCTGACAGCGCCG 885815 28 100.0 32 ............................ TCGGGTTGCTGAAAAGGTTGACGGCGTCGGAC 885755 28 100.0 32 ............................ ATACCTGATCAGGTGGTTTGGCCTTGCTAAGG 885695 28 100.0 0 ............................ | TT [885671] ========== ====== ====== ====== ============================ ================================== ================== 133 28 100.0 32 GTTCTCTGCCGTATAGGCAGCTTATAAA # Left flank : TCATTTCGAATATCCATGAGATCCCTAAACAGGTTCCAAGATACTTTACTTATAGTCGTGTGCAAAACAAAGGAACGAGCGATTTAAAAAGGATAAAAAAAGCAATGCAACGTAGAGGTAAAAGCGAGGCAGAGATTCAGAAGGTGTTAGAGCTAAGGATTCAAAAGCTGAAGCCTGTCACATTGCCTCATGCTCATATTAATAGCGCTTCTACTGGGCAAAGATTTTTGTTAATGATTAATCGCAAACCAGCTCCTATGAAAAGTGAAGGACTTTTTAGCAGTTATGGTCTGAGTCCTACCTCAACAGTACCTGACTTCTAGTTTAGTCTATGAGTCAATGATGCAAAAAACCCTTTTCTTAAGATAAACCAACTCTCTGCAAAGAGCGCGCTAGTACAAGGCTCACAAGGGATGATGTATTTTGAAATAGAAAAGGGTTTTATATGCATGTTCTTTAACAATTAGGATAATATAAAGGTTCAAGCATGAATTGTGCTA # Right flank : GCGCACTTGCATTTTCATTGTTATCACAGCTGTCTCAACAAATATCAAGAATTAAATGCGAAGATTAAACGCATCAATAATATATATACTGAAGAGCGCCTGAAGGTTAGGAGCATCAAAGAAGTCAAGAAAAAAGTGATAGCACCATCTCAGCGTAAAGAGATGGCGTAAACATCACGACATCAGGATTAGCTAGTCTTGCCATGAATTCAGCTTAAATCAAAGCGGCTTTACTACCCAGCCAAGAATTAAAATAACAATGAGCTAATTGCGGATTGCTTCTTATGGCTCACTACCAAACAAAAATTGTGAGGCTTTGGTCTCTACTTTCTTCGTCTACGTAACCTCAAGGGCTTTAAGTGGAATAAAATGTCATCAACAATTTAATTTAATCCCTCCCCGGAACTGCAGTTTTACACTGCGCTTGACTATGTTAAAAAAGCAATAGCTTTATTTATTTATAAACAATTATTCCAAGGAGTTCTACCATGAGATACATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTGCCGTATAGGCAGCTTATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCTCTGCCGTATAGGCAGCTTATAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1159312-1157890 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027417.1 Oligella urethralis strain FDAARGOS_329 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1159311 36 100.0 30 .................................... TAATCGCTTGATGGATAAAATTAAGCCACT 1159245 36 100.0 30 .................................... TGGCATAGTTTTTTGAGAGTTATTAACTAA 1159179 36 100.0 30 .................................... AATCCTGATTACATCAAAGTAAATGACTTG 1159113 36 100.0 30 .................................... CCTAGCGTCGTCATATACGCTTGCATTATT 1159047 36 100.0 30 .................................... CGTGAGCGTTCTAGTCAAACCGCCATCTTG 1158981 36 100.0 30 .................................... ATTGGAATATCCGGAATACAACTATGCTTA 1158915 36 100.0 30 .................................... CGTGGTTCGGTTACTGCGGTGATTGACAAT 1158849 36 100.0 30 .................................... CCAAATACCGGTGCGGTTAAAGACTGTCAG 1158783 36 100.0 30 .................................... GCGTACAACAAACCACATTTTACGGTACAC 1158717 36 100.0 30 .................................... GAAACACACGCTTGCGTCGTTGGGCCAGTC 1158651 36 100.0 30 .................................... TGACAATCCGGCTAAGTCTCTAGCTCTTCT 1158585 36 100.0 30 .................................... TTGGCTCTTTGGAGTTAATTATGAATAGAG 1158519 36 100.0 30 .................................... GATCTAAGTTCGGAAGAACAGCGAGCTGTG 1158453 36 100.0 30 .................................... GTTTAGGTTTAACTCGGCAAGCATGCTCCA 1158387 36 100.0 30 .................................... CAGCTTAAGCTTGCTGAGTGCATCACAAAT 1158321 36 100.0 30 .................................... CGCAGGGAACAGCGTCTCGATGTTCGACCA 1158255 36 100.0 30 .................................... CAGCATGGCTGCATTGAGGTAGGTAACGAG 1158189 36 100.0 30 .................................... TAATTGATGCTGGTCGAACATCTTGCAATG 1158123 36 100.0 30 .................................... TACTTAAATTACATCTTGATTCCTCAAATT 1158057 36 100.0 30 .................................... TTTAAGCACCTTCGCAATGTTACTCACGTA 1157991 36 100.0 30 .................................... AGGGTGTCAAGTGGTCACCAACTTCGCTAG 1157925 36 86.1 0 .............................AG.CCT. | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.4 30 GTTCCGGTTAGAGCTCAATTCTTAATCTGTTAAACT # Left flank : ACCCTGACGACGGATAATTGTAAAGTCCACCTGCAATTGTTCACCGGGCTCAGTCTCAAAGCGCACCAATGGGTCAGTTGGAGCAGTCGGTTTAAATTGAGCAACATAGTCGCTCAACAGGCGTATCTTGCCAGGATAGCCAAGCTCAACAATTTCTCGATACAGCACGGCTGCTGGTATCCAATCGGGCGATGCGCTTTGGATACGCTGGTGAATATATGGCTTATAAGGGTCGAGTTTACTTACCCTGTTTGCGCGTCGGTGATACTGTGGCGCAGTAGATTTCTCGTTAAGGTACTTCTTAACCGTGTTACGTGAAATACCTGTTTCTCGGCTAATCGCTTTGATAGATTGCCCCCGTTTTTTTAACACCTGTATGGTCACTACCATCTCCTGAGTTAACATAAGCGGCCTGAAAAACCGCTAGTTTAAAAACTAGGGGGTCAAAATTCAACTGCCGATGGGGGTCATTATTACATTGCCGTTAACAAAGCTTTTAA # Right flank : TGCAATAACCCCTCAAACTTCCTAAAATATGGCTTATTTCCTTGCTTTCTTACTTCAGTCCCATGAGTAGTTTTTTTCAACAAACCGCCAAAGCCCGTATTGCCAAACACCTCGACCGTTTTCCGTTACTTAAGTTAGATCAAGTGATTGATTGGCGACCGATTGAACGCTACCTCAATTCACAAAAGCAGCGTCGATTGACGACTCAACAAGGTCGTCCGAGTTATCCCGTGCTCGCCATGTTTAAGGCAGTCCTATTGGGTCAATGGCATAGCCTCTCCGATCCGGAGCTTGAGCATAGTTTGGTGACTCGCATTGATTTTACGATTTTTTGCGGTTTTGATGATATGGACGTTCCCGATCACAGTACCCTATGCCGTTACCGTAATTGGTTGGCTGAGGAGGGTTTATTGGATAAGCTGTTAGTGCTTATCAATCAGCAGTTAAGCGAGAAGGGTCTAAAAGTAGCCAAGGCGCAAACGGCAGTGGTTGATGCGACG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGGTTAGAGCTCAATTCTTAATCTGTTAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //