Array 1 2838142-2840549 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045719.1 Vibrio cholerae O395 substr. TCP2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2838142 28 100.0 33 ............................ CAAATGGCTCAATGCGCGATTGACTACGTTACT 2838203 28 100.0 33 ............................ CAATCAACGCACTAGACAACGCCCAAATGAACC 2838264 28 100.0 33 ............................ CAACGCTATGCCCGCTAAAATCAGTAAACAAGA 2838325 28 100.0 33 ............................ TATATTTCGCTCCCGTCTCGTCAACTAAAATCA 2838386 28 100.0 33 ............................ CTTCAAATAAGTAACCAGCCTCTGACGCTGTTA 2838447 28 100.0 33 ............................ CACCGCTAATCATGGTGGAACGAACGCCATCAA 2838508 28 100.0 33 ............................ TGATTTTGGAAGTAATGGGAACTGAGCGTTAAG 2838569 28 100.0 33 ............................ CCAAAAACCTACGCGGTTTTAAATGGATTCGAC 2838630 28 100.0 33 ............................ TATCTTGGTTTTGCAGGTTGTTAATCTCAGCGT 2838691 28 100.0 33 ............................ TGATTGGTTCCAGTTTATGACAAGAACCAACAC 2838752 28 100.0 33 ............................ TACATTGGCAAGACGTTTGTTTTTCGCTGTGTA 2838813 28 100.0 33 ............................ CGACTTTTGCATCATCGATGTACGGAACGCTAG 2838874 28 100.0 33 ............................ CACTGAGATTGCGTGTCGCCGACTTGCGCTTGC 2838935 28 100.0 33 ............................ TAGACTATCAATGTGCGCTTGCAAGTCTTTTAA 2838996 28 100.0 33 ............................ TTGATCGCTCTGAAATTGTGACTTGTTTTGTTA 2839057 28 100.0 33 ............................ TAGATCTTAATTGTTCGCGTTGAATGGGAAATT 2839118 28 100.0 33 ............................ CAGATTGTAGATAAGCAGGAGACTGCCCACCAG 2839179 28 100.0 33 ............................ CGGTTGATAAAACGCTGCGTAAGTTTTTCGAAG 2839240 28 100.0 33 ............................ TAAAACTTCATAGATTGTTGCCTCCATTGTTTC 2839301 28 100.0 33 ............................ TACGTCAACGGACAAACCAAAACCGAATGGAAG 2839362 28 100.0 33 ............................ TAAGTAACGCTGCTACTGCCCTGAGCTAGTACC 2839423 28 100.0 33 ............................ TACTGGCCGATGAGGTGGACCGCTACGGCTTCA 2839484 28 100.0 33 ............................ TCACCCAGCACATTACCACCCATGATCAGCGTT 2839545 28 100.0 33 ............................ CGAGTGGGTTTAGGTTGTAGGTTGCACATACGC 2839606 28 100.0 33 ............................ TTCGAAAAGCTATTAGGCGGCATAACCACAGTT 2839667 28 100.0 33 ............................ CAACAAACCAGCCACTTTGCATTTTGTAGCAGA 2839728 28 100.0 33 ............................ TGGAAGTTATTTATATTGGACCTGATTGCACGG 2839789 28 100.0 33 ............................ TACTTTGGGCCTTGTTTTATGTGCCAGTGCCCG 2839850 28 100.0 33 ............................ CCACTATTTCAATAATCGGCGTAGCTCCGACTG 2839911 28 100.0 33 ............................ CGTAATCTTCTTTGTCTGAGTAATCCAAAATAC 2839972 28 100.0 33 ............................ TCATGGCAGCGATATTTGTTTTACCCTTCATAC 2840033 28 100.0 33 ............................ CATCTGGAACGCACTCAAGCGGCAATCCGAAGT 2840094 28 100.0 33 ............................ CAGCAATGTGTTATCCAATGCGAAAGCGCCGTT 2840155 28 100.0 33 ............................ TATTTTGCGTATCACCGAAGCGCTGTAGGTTAT 2840216 28 100.0 33 ............................ TACGTCCAGCATTACCGCCGCGCCGTGTCGAGT 2840277 28 100.0 33 ............................ TCCTCCCTGCTCATATGCCGTTAAAACTTTCTC 2840338 28 100.0 33 ............................ TCTGATGCGGCAAGCTCTTTCGCTAGCTCGATT 2840399 28 100.0 33 ............................ TACAACATCCATGCAAGCGGCAAAGAATACAAA 2840460 28 100.0 33 ............................ CTCTTTAATCGAATTCCATAACGGTGACGTTAA T [2840481] 2840522 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.3 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACACGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATCTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : AGTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATGGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTAGCTATAAACCTAAACCAGAGGGGATTTGTGACAACAGCTACGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGACTGCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //