Array 1 96135-95618 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMCT01000021.1 Micromonospora carbonacea strain DSM 43168, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 96134 28 100.0 33 ............................ CGGGACGACCGCCCGGGAGTCAGGGGCCGGGGG 96073 28 100.0 33 ............................ TGGGTGATGCTTACAACTGGCCTAGCATCAAAT 96012 28 100.0 33 ............................ GAAAGCGCATGTCGTCGTTATCCATGCTCTTAC 95951 28 100.0 33 ............................ CTCGGGGTCGGTGACGGGCGGCTGGGAGTGCAC C [95946] 95889 28 100.0 33 ............................ GGTCGGTATGTATTTCACGGTGACGGGTACCGC 95828 28 100.0 33 ............................ GCGGGGCGAGCCGGGGGCGATCGTCAATCCCCG 95767 28 100.0 33 ............................ GGCGACGTACAAGCGGACGGTCGGCATGCTCGG 95706 28 100.0 33 ............................ CGTGGAGGAGATCGCGTCGGTCATCGAGCACAT 95645 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 33 CTGTTCCCCGCGCATGCGGGGGTGATCC # Left flank : CTCACCGCGGACCGGTCGACGGTCGGCCTGGACGAGTTGCCGAACGGAACACGCCGGCCGCTCCGGAGCCGGTGTAGGAAAGGTGTGAAGGTGGGTGAAGGGGGTGGCGGGTGGGTGCGGGGTTGGGGTTAGGGCTGCCTCCGGCGGGGGCCCAACGACTCCGGGATGGAGTTGCCGAACGGTTGCGGTCGTGGGTGGTTGGGGTGGGATGCCATCCCGTCCACCGCCGACCCAGGCAGAGCCGAGCAGACCAGGGCCAGGGTGACAAGGTCGTTCGTCCGGTAGGGCGCTCCACCTTGTCACCCTGGCCCTGGCCCGCTCCACGGTGTGTGGGTCGGCGGCGGACGGGATGGCAGGAGCGGGGGCGCGGTGCGCGCCAAGCGCGGCGAGTCAGCGGTACCTTGTCACCAGCAACCAGGGCGGCACGGGCGGGGAGGATCTTGGTCGGGCAAGTGAATGAAATCGGCGCTGTTGATCTTTAGCGGCCCAGGTCAGGAAGT # Right flank : GGGCAGCATAGAGGCAGCGAAACGGTTGCCAGTCGTTGATGGTGCCCGAGGCTGGCCGTGCACCATGGCCACCTGAGCAGCACCAGAAGGCAACGGCTTGCAGCCGATGGTGCGCCATGTCGGCGTTCACACCGAAGAGGTCACTGGTTCGATCCCAGTATCGCCCACAATGAATACAGCAAGGTCAAGGCCAGGTTCCGAGATGTCGGACCTGGCCTTACTGCTGTCCTTCGTGGAGATCATGAGTCACCCATGAGTCACGAGTTGGTGCGTGTAGGTGAACATCGGTGGCTGGCGCTGTCGGCCAGTGTGGGAGAACCATCTGCACATCTATTTAAGCGGCTGTTGACGGGCCGCACGCGCTGCCGCTTGGCTGAGGCCGTCACGCCGGTTTCCCGGCGGCTGGCGCGGTTAGCGGGGAGCCCAGTGGGCCGCCGCAGAACGACAGGCTGTTCTTGACCGGTGGTGGTGGGCGGGCAGCCGGCCGGGCCGCGTGGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 126028-126786 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMCT01000011.1 Micromonospora carbonacea strain DSM 43168, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 126028 28 100.0 33 ............................ GGCACAGGCCGCCGAGCGCGCCGAGGATGAGGC 126089 28 100.0 33 ............................ CTGGCACTACCTGATCAACGACACCGAGCGTCG 126150 28 100.0 33 ............................ CTCACACCGCGACCGGGCGGCTGCGCGGGACTG 126211 28 100.0 33 ............................ GCAGGGTGTTCCGGCTGACGGCGTCTACCGGGC 126272 28 100.0 33 ............................ GGGCAACGACAACTGGCTCGTCGCCCCCAAGGA 126333 28 96.4 33 ............T............... CGGCAAGCCGTTCGCCTACCCGCCCGTCGGCCC 126394 28 100.0 33 ............................ CGGCACCGCCGCCTGGTTCAAGCAGGAGGTCGC 126455 28 96.4 33 .....T...................... CCGGTGCGGAGAGCGGTCCGGGGGCTCGTTCAC 126516 28 100.0 33 ............................ GGTCAGGAAGTTGGCCCGGCCGAGGCGGGTAGC 126577 28 100.0 33 ............................ CGGGATGCACTGTCCGTTTTCGGCACAGCGCGG 126638 28 96.4 33 ....................A....... CGGCTGCGGCGACGCAGCTTTCCATCGTGTTCG 126699 27 89.3 33 .......A.........-.....T.... GCGGTGCCGGAGGTGCGTAACCGTGCCGCGCGT 126759 28 92.9 0 ............T...T........... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.8 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : GCCGGGGCCGGACGCGGGCGGTGCTGTGGGTGCTGGAGGGCAACGCGCCGGCCCGGCGCTTCTACGAGCGGGGCGGCTGGCAGCCCACCGGCGAGCGCCGGGAGGAGCAAATCGGCACCGCCCTGACCCCCCAGCTCCGCTACGCGCGCGCTGTGTAAGGAAGGGCCCCCTATTAACGCATACGGTATAGAAGGGTTCCCCTCTCACCCTCGCCCCGGGCGCGCCGCCAGGCGGCCAAGCTAGAGACGTACGTGGTGACGGCGAGCGGGCCGCCGACGGACCCCGGTGCGCCGGTCCAGCCGTTCCGGCCGCATCCGGAGCGCAGTGCCTTGGAGTTCATCGGATTGCCGATCGCTTCCTTCAGATCAGGCGCCTGCCGACACTAGGCTGTGCTCGCCCTCGCGGAACGCGCCGGAGGAAGGGGCATTTGGCAGATGATCTTGCGCAGCAAAGTAAAGGAAAACGAGGAAGTTGATCTTTAGAGCCGCAGGTCAAGAAGT # Right flank : CGGCGCAGAGGCCGGCGCAGGTCTTCGACCTGGACTGCTTCGCACGTGGACCGATTCCAGACGCGGCGGTCCGCCGAACCTGTCCGTAGCGCACCCGGACCAGCCAGGACGGCCGGGAGCCACACGGCCGCGCAGGCGACGAGCCGTACTCCCCGAACGACGAAGGTCCCCAGCCTCACACGCTGGGGACCTTCGTCGGCGTTCGGGGGAATCAGACCAGCGGGCTGCTCTTCTTCGCCAGGTCGACGAAGGACCGCCAGGTGCCGGGGGTGAAGCGGAGGGTGCCGCCGTCACGGTCCTTGGTGTCGCGCACCAGCACGACGCCCGGCATGTTGTCCGCGACCTCGACGCAGGACCCGCCGTTGCCGCCGGACCTGGTCGACTTCCGCCACTGCGGGGTCGTCATCGACTCCATGACTTGGCCACCTCCTTGATCAGTTCGATGGACTGCCGGCGGGAAAGCGCCTCGTTCCGCACGATCTCCCACGTCTTCGCGAGCC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 464833-465499 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMCT01000001.1 Micromonospora carbonacea strain DSM 43168, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================================== ================== 464833 28 100.0 33 ............................ GATGCCTTATCCGACGACGGTGGCGATGACCCG 464894 28 100.0 33 ............................ CAGAAGCGCATCGACGCGCTGATGGCCCGGGGG 464955 28 100.0 33 ............................ CAGCGGCCGGTGCCGCTGCGTCCACGCCAACGT 465016 28 100.0 33 ............................ CTTCGCCGGGTTCTTGCGGAACGGCACGTCCTG 465077 28 100.0 33 ............................ CAACAAGCCGATCATCGGCCCGTGGACGGGTTT 465138 28 100.0 33 ............................ CGGGTACCTACTCAGCAAGGCCGGGCAGGCTGC 465199 28 96.4 33 ..A......................... CCCGCTTTACGACGTCCTGCCACTCAGCGGCGT 465260 28 96.4 33 ............T............... ACCGCCCGTGTGGGTCAGAAGCTCACCCAGGGT 465321 28 100.0 63 ............................ CCCCCAGCACACCAGGCACTGGGAGAATCCGGCGGTGTTGGAGGCCGACCCGACCCTGGGCGG 465412 27 96.4 33 .................-.......... CTGACCTGATCACCCGCCCCGGGTCGACGCGAC 465472 28 92.9 0 ...................A....G... | ========== ====== ====== ====== ============================ =============================================================== ================== 11 28 98.4 36 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : CGTAGAGCCCGAGCGCGACCACGCCGCCCGCGATCCAGAGCAGCCCCCGGTGCTCCCGCCAGCCCTGCCACACCAGCCAGGCCCCGCCGATCTCGGCGAGGGCGGCGAGCAGGAACAGCAGAATCGAGCGGGCGACCGTCATGCGTCAGACCGTAGCCCTGTGAAACCTCGTCAGCGGTAGTTGGTGTGGAGTTGCCGAACGGTCGTGGGGGTAGGGGCGGGTGTTGTGCGATCCGGTTCACCGCTACTCAGGCAGAGCCGAGCGGGCCAGGGCCGACAAGGTCGTTCGTCCTGTGGGGCGCTCCACCTTGTCGGCCTTGGCACTCTTCCCCGTCGTGGGGGTCGGCGTAGGACGGGATGGCGGGGGCACGGTGCGCGCCAAGCGCGACGAGTCAGCGGTACCTTGTCACCAGTAGACAGGCGGCACGGGCGGAGAGATCTTGGTCAGGCAAGTGAATGAAATCGGCGTTGTTGATCTTTAGCGGCCCAGGTCAGGAAGT # Right flank : CCACCCGGTAGCGGACCCAGGCCGTCAAAAGGCCGGAGGAGGGCGACCAACGACGACCAGAGCCGCCGAGGTTCGCCCAGCTCACACGGTGTGGCTCGCTGCCCAACTAGGAGCCCGGCCGGGCCCTTAGCGGTAGTTGGTGAACTGGAGCGCGATGCCGAAGTCCTCGCTCTTGAGCAGGGCGATGACGGCCTGGAGTTCGTCCTTCTTCTTGCCGGTGACCCGGAGCTGGTCGCCCTGGATCTGCGCCTGGATGCCCTTCGGGCCCTCGTCGCGGATCTTCTTGCTGATCGCCTTGGCCTTGTCCGAGTCGATGCCCTGAACCACCTTGGCCTCGATCCTGAAGACCTTGCCCGAGGCGCGCGGGTCGCCCGCGTCCAGGGCCTTCAGCGAGACGTTCCGCTTGACCAGCTTCTCCTTGAAGACGTCCAAGGCGGCCAGGACCCGCTCCTCGGTCTCCGCCTGGAGCCTGATCGCCTCGTCGCCCGTCCAGGAGATCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 22029-21513 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMCT01000025.1 Micromonospora carbonacea strain DSM 43168, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22028 28 100.0 33 ............................ CCCTCACCGAGAGGACACAACCCAATGAACGAC 21967 28 100.0 33 ............................ CGAGATGGAAGAGGCCGGCGAGCAGGCCCTGTC 21906 28 92.9 33 ...........AT............... CCGCTGGGAGCACCGTGCGCACCGGTCGGCGGC 21845 28 100.0 33 ............................ GGCGTGGCCGAAGTCCGCCGGGCGCTGCTTGCG 21784 28 100.0 33 ............................ CCGACTGCGAAGCGCCGCGCCCTGGTCGTCGTC 21723 28 96.4 33 ............T............... CGGAGGCGGCACGGTGACGGCGGTCAGCGACTT 21662 28 100.0 33 ............................ GTCACGGACGAGTCCCGAGGCGATTCGTACTCG 21601 28 89.3 33 .......T......T.T........... CCACCGCGGACGCCGCTGCTGGCGGGATCCGGC 21540 28 82.1 0 ...............C...C..G.C..A | ========== ====== ====== ====== ============================ ================================= ================== 9 28 95.6 33 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : TCTACTCAAGCGGCCGTTCCTTGATCACGATCCCGCCTGGCCGGCGCAGCCCATCCTGATCCGCATGAGGCGACGCGCCGCAGGCGCGCCCGTGACGCCGACGCTCGACGGGGCCAGCGACGCCGAGATGTCCGGCCTCATCGACCGGGAGATGGGCGGCCTCGACGGCAACCTGGGTGAAGCCCTTTGACCGGCTCGACGGCCTGGTGAGCCGCCGTTGGCGGCCGGAGCGGGAGAAGACGGCAGACCCTGGGCCGCCTCTTGCCGGGTGGCCTGGGTTAGGGCTGCGTCCGGCGGGGGCAACGACTCCAGGATGGAGTTGCCGAACGGTGGCGGTCGTGGCTGGTGGGGATGGCAGGAGCGGGGGCGCGGTACGTTGTGCGCGGAGCGTCAGGGGTGCTTTGCTAATCAGCGACCGGGCGGCACGGGCGGGGAGGATCTTGAGCGGGCAAGTGAATGAAATCGGCGTTGTTGATCTTTAGCGGCCCAGGTCAGGAAGT # Right flank : GACCGACCAGCGAGCGGACGCGTGAGCAGGGCAGCCTCGGGAGCGGGGCACGCCGGGGGCTGGCAGCGACAACGACCGAGCGGACAGCGTCCGCCATGCCGGCTACAGCTTGTGATCGACCGCCTACGCTGCCATGCTGGCGTGGCGCTCCGGCAGGTGGACCCGTCCAGCGAGACGAAGTCGAGTCCCAGTAGGCCGGGTAAGGGTGGCGGGGATCTTGTGGGCTGCCCGAGGAGACTGCCAGATAGTTTCGAAGGGCGGCGATGGGGATGGCTCCGAAGCCCGGTCGGTCGGATGGCCCCAACACTCTGCTCAGTGACGCCCGTCGCCGGCTCTTGTCCCCGAGCGGTTCAGGCCGACGGATGTCCCGGCAGGAGGTCGCCGAAGCTGTCAATGCCTATCTGTGGGCGACCTACGGCACCAGAACCAGCCTGGATGCCAACCACGTCGGGAAACTCGAACGGGGCGAACACCGCTGGCCGAAGCCCGCGACCCGGGAG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 187744-187472 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMCT01000005.1 Micromonospora carbonacea strain DSM 43168, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 187743 28 100.0 33 ............................ TATGTTGCCAGTATCTGACATCAGCCGTGACAG 187682 28 100.0 33 ............................ CTTCACGATCAGCTCACGCCCGGTCGTCGCCCG 187621 28 92.9 32 ...C.................A...... CCCGACACGAGCAGGGTCAGCCCGACCTGCAC 187561 28 85.7 33 ............T.G.A.......G... CCGGGGCATCCTGCTGCACTCGGCGCTCGGGCA G [187539] 187499 28 78.6 0 .CA...........T.T.....C...T. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 91.4 33 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : CAGGTCAGGGAGTACAGCCGCGTCTTCGAACATCTGGTCGCTACGGCGGCCGGCGCTCGGGAGTCGCGCGACCTGATCCAGGAGGCGATCGACGGGCTGTGAGAGGACGGCGCGGGTGAAAGAGATCAACCAGGCCTCGGCGACCTGGCGTAAGAGCACCCGCAGCAACGGCTCTGGCGACTGCGTGGAAGTCGCGGAACTGTCAGGCAAGGTCGGCCTTCGCGACAGCAAGGACGCGGATGGCCCGGTATTGATCTTCGAACAGGTTCCCTGGGCCGCATTCATCGAAGCAGTCAAAGCCGAACGGCCCGGCCGCGAGTAACCAACGACCGAGCCCTCGCGAGTCCTGCCGCCACCCCACCCGAGCCAGCAACGGCGTCCAGCACATGCGCTGCACTTGACCGAACAAGAGAGCCAGCAGCACCACGAACGAGGTGATCTTGACAAGCAAAGTGAATGAAACTGGCAAAGTTGATTCATAGCGCCGCAGGTCAAGAAGT # Right flank : GTCCCGTCGGTCGTTCCGAATCAGTGCTCTATCCCATTCCGCACACTCAGCAGTTGCTGGAGCCGATCTCCGCCGCACACCTGAAGGCCGAGCCGTCGTGCTGCCAACTGGCGACGTGACCGTGCGCCATACCGGAAAGTAGTCTGTCGTCTACATTGCCTAGCGCGCCCGCCAACGCATGACATCTACGGCCAGAGAGGTTGACATCATGCGAGGCGTCCGAGCCGAGAGTAGGCCCGTGTCCAGAACCATCATTGATGCCGATGACGAACTGCTAGGCGAGGCGGCGAAGGTCTTCGGCACCACCACCAAAAAGGCCACTATCAACGCGGCCCTGAAGTCGGCGGTCGACCGAGAGAAGCGTCGAGAGTTCGCGGACTGGCTCAAGAGCGGCGGCCTTCCCAATCTGACAGAGTGAAAGAGATCCGCGCAGTTGATCTATAGTGCCGCAAGTCAAGAAGTCTGCTCCCCGCGTACGCGGGGTGGTCCTCGCGGGCATC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 78229-77653 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMCT01000008.1 Micromonospora carbonacea strain DSM 43168, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 78228 28 96.4 33 .........A.................. GGCCAGCCACGGCAGCGTCACCCTCGCCGACCC 78167 28 96.4 33 .........A.................. ACCGCCGCAGCGGAGGACAGCGTGGCCGCCTTC 78106 28 96.4 33 .........A.................. TTAGTTGACCAAGCCGACGTAGGCCGGCTTGCT 78045 28 100.0 33 ............................ GCTGCGGCCACGGCAGTGCGCGGCCTGCCAGCG 77984 28 100.0 33 ............................ CTCCAGGAACTCCGGACGGGGAGACTCCTCGCG 77923 28 100.0 33 ............................ CGAGTTCTTCGCCCGCAGGCCCGACCGGATCCT 77862 28 100.0 33 ............................ CGGCCACGAGTTCGAAGGCACGTACTCGGGGGC 77801 28 100.0 33 ............................ TCAGGTTGTCATACACCACGCCGTCGGAGCCGC 77740 28 100.0 33 ............................ GGTCCCACAGTCGGACTCGATGCGGTACTTGCG 77679 27 96.4 0 ....-....................... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.6 33 CTCTTCCCCGCGCATGCGGGGGTGATCC # Left flank : GCGGACCTGGTCGCCGCCGCCGGCGGCCCGGACCTCGTGGTGAGCTGGTGCGCCGAGGCGGTCGCGGCGTCCGCCCCGGCCGCCGCCACGACGCCGACGGGTCAACCGGGCGTCGACGGAAGGCCGGACGGGCGGCCCGGCCGGTCCCCGGCCACCCCCACGCTGCCGGCTGGCCCTCCGTCGGGCGGCCCCGCGTCGCCAGGGAGGCCCACGGTGCCGGCGGCCCCGCCGATGCCGGGAACTCCGTCGATGCCGGGAACTCCGTCGGCGCCGGCGGGCCGACCCGCGCCGGCCGACCGGTCCACGCCGGCCACCCCGGCGGGAGGCCGGCCCACGACGACACCCACCGGCCGGCCCGTCCCGGCCACGCGCGGCGCAGGGTGACCCGCCGAGTTGGCGGTACGTTGTCACCGGAGACGGCGACGGGAGCGGGGCGGGTCGTGGCCAGAAAAGTGAACGAAATCAGAGATGATGATCTTTAGCATCCCAGGTCAACAAGT # Right flank : TTGGCTATCGCCTGCGCCGGAGATCGTGCGGGCAGAAGGATGATCGACGGCGAACCCCGGACCGCCATTTCGGTGCACAGTGTCACCTTCCCGTCACTCATTCAGGTACCGTCCGAAGTGGCGAGTCGTCGGACGAGGGGCGAAATGACCCCAGTTCGCCTACCTGGGAGGCAGCCATGCGCACAACGATCGGCGATCACCTGCGGAAGCTGCGGACGGGGTCCACGCTGACGCAGGAGCGGTTGGCCGAACGCGCCGGGGTCAGCGTCGAGACGATTCGCAAGCTGGAGCAGAACGAACGAACCAGCGCCCGCATGTCGACCCTCAACCGGCTGGCCACCGCGCTGGGCGTGCCCACGACGGCATTGATGGGGTCCGCCGCCCAGGCCCAGGCGATGCGTGAGCCCGACGCCGAACCACTCGGCCTCGTCGACGTCCGCCGCGCGCTCACGCCAGTATCCGGTCTCGACGGACGCTCGGCGGTCGGCGATCCGGAGACC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : CTCTTCCCCACGCATGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 27745-28005 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMCT01000006.1 Micromonospora carbonacea strain DSM 43168, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 27745 36 91.7 37 A..........A........A............... GGGCCGACGCCATCCTGATCGAGCCCTCCAGCGCGAT 27818 36 100.0 38 .................................... CGGACCGTCAGCGATGTGACCGGGGCTGGCGGCACGAT 27892 36 100.0 42 .................................... CTGCTGCTGGACGAGCTGGACATGTACGGGTTGGCGCTCGGC 27970 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 4 36 97.9 39 GCTGCAACGGAGACCGGCCGGCGCGGCCGGTGAAAC # Left flank : GCGCGCAGGGGTCGGGATGTCATCCAGGCGATCATCGGCGGTGACGGCGGGAGGCCGACGCATCTGATTCCTGTACGTGCGGGCGGTCCTGCGCGGCGGTCGACCCCGGGGCGCGGTGAGACCGGACCGCGGCGGTCCAGTCCCTCCGCTGGAGGCTGCCGCCGGCTCTCAAGAAGCGGAAGGCTCCACATGGCGGTGGAGCCAGCGGACGATTGCCCGATCGATGAGTCCCTGTTGCCGTACCCATCGAACCAGCAAGGCGATGACGAGCGACAGGACCAGGCCCGCCCACTCGGGTGCACCCGCCTTCCACGCCAGTCCGCCAACGATCGCGGCGATCAGGAGCAGAACCCACTCCGTCCTCCCAGGGGTCACCCATCGGAGGAACCTTGTGCGAATCATGAGCACACCGAAGCACCTATCCGCTTTGGTCGCCTCGAACTATCAGGCGAGAACGAACTCGTGTTATCGGGGGAACCTCAGGGCAACCGGGTCGCGCA # Right flank : CGGCGGCGGTTGATCGGCGGGAGCAACAACATCGCCCGGCTGCAACGGAGACCGGCCTGCGCGGCCGGTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCAACGGAGACCGGCCGGCGCGGCCGGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.10,-14.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 411605-410294 **** Predicted by CRISPRDetect 2.4 *** >NZ_FMCT01000006.1 Micromonospora carbonacea strain DSM 43168, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 411604 28 100.0 33 ............................ CGGGCGATGTCGTCGCCGGTCAGCGCGAGCAGC 411543 28 100.0 33 ............................ CGCCTGGCCGTACCCGTCGACCCCCGTCCTGTG 411482 28 100.0 33 ............................ TCGAGCCCCACGGTAGGGCAGTAGCCATGCGGC 411421 28 100.0 34 ............................ CACGGAGAAGCGGCGGGCGGGGAAGGTCAAGGCG 411359 28 100.0 33 ............................ CTACGACCTGTTCGTGTCGTACGTGCAGATCGC 411298 28 100.0 33 ............................ CCGCCGGCTCGCCGGCGTCACCCGCACGACCAT 411237 28 100.0 34 ............................ GAAGCCGGCTTCGGGCGAGTAGCGCACGCCGCTA 411175 28 100.0 33 ............................ GTTCATCGCCGACACCGACAACAGCCGCAGGAA 411114 28 92.9 33 .....TT..................... GCTGTGCGTGCAGTTCGGGTGCTGGAGCCCTGC 411053 28 100.0 33 ............................ CGGAGACCACCCCCATGCCAGCCTGCCCCGTCG 410992 28 100.0 33 ............................ GGCGCGGCGCGGTGGGCAAGGCTGATCAGGTCA 410931 28 100.0 33 ............................ CGCGCTTACCCATTCCTCGCACCTACCTTCACC 410870 28 100.0 33 ............................ CGCCCTGCGGCCGGTGTCGCACCGGTACGCCGA 410809 28 100.0 33 ............................ CCGTCTGGAACCGCGCGTCCAGCAGTGCCGGCC 410748 28 100.0 33 ............................ CATGCGCGCGGCCAATTCGAGGCCGTCTGCGTG 410687 28 96.4 33 .............G.............. CACCTCGTCCAGCTCGGCGGGGCTCAGCCGGCG 410626 28 100.0 33 ............................ GAGGCCGCCGAGCGGCACTGGACCAGCGGTGGC 410565 28 100.0 33 ............................ CACGCGGACGCCACGCCGAAGCTCGGCGGGGTG 410504 28 100.0 33 ............................ GGCGTTGCAGGTCGCCCTGGAGCACCTCGGCCA 410443 28 96.4 33 ......T..................... GCGAGGTGTGGGCGGACATCGTCGGACATCCTG 410382 28 100.0 33 ............................ CGCGAACACGTGCGGCGCGCGGGTCGGATCCTC 410321 28 92.9 0 .......................A...G | ========== ====== ====== ====== ============================ ================================== ================== 22 28 99.0 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : TGTGGGACGAGGGAGGCTACGAACTCGCCGGCGGTCGAAACTACTCCGGGGACGTGGACTTTTGATGACCGTCATCATCCTCACCGCCTGCCCGGAAGGGCTGCGTGGGCACCTGACGCAGTGGTTGCTGGAGATCTCAGCCGGGGTGTACGTGGGACACGTCAACAGCAGGATCCGACAACGGCTCTGGGCCAAGGTCATCGAGATGGCCGGGCCCGGCCGGGCACTGCTCGTCTACCAGCGACCAGGCGAGCAACGGCTTGCCTTCGAGGTGCATGACCACCGCTGGGAGCCGGTGGACTTCGACGGGATTGCGCTGATGCGGCGGCCTACGGATCGGAGTTCGTACAACCCAGCAGTGGGGCGGGGATGGAGCAAGGCGTCCAAGCGTCGGAAGTTCGGGCGGAGGGCGCCAGATGGGGGCAGCGGATCGTCGGTTCCCTCCGAACCAAGTGAAGGAAAGAGCGGTAGTTGATCTTTAGCGCCCCAGCTCAGGAAGT # Right flank : CGGATCTTGAAGGCGACGCCGGGCCGGCCGACGGCGGGAAGCGTAGCAGCGGTGGTACCGCCTGCAGTACCATCGGCCTGGCCGTCCATAGCCAAGCTCGTTGCAGCGATGCGAAGCAACCAGCAGAACGTTGCCTACAACGACCTCTACGCGGTGTGCGAGCACTACTTCGGGAAGCCCCGGCAGACCGACACATCTCACGCGGTGTTCAAGATGCCCTGGGCGGGCGACCCACGAGTCAACATCCAGAACGACAAGGGCAAGGCCAAGGCATACCAGGTACGGCAGGTGCTCAAGGCGATCGACAAGAAGAAGGCCCTGAGATGGACCCCGAAACCCGTCTCGACATCACCCACTACACCTACCGCGTCACCTGGTCCGCCGAGGATCGTGAGTTCGTCGCGACCTGCGCCGAGTTCCCGTCGCTCTCCTGGCTCGCGTCTTCCCAGATCGAAGCGCTTCAAGGGCTTCAGGACCTGCTGCGCGAGGTGATCGCGGAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], //