Array 1 43568-43841 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQSG02000006.1 Acidihalobacter prosperus strain DSM 5130 contig_06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43568 29 100.0 32 ............................. ACCAGCAGGTCTGCCCGCATCTGTCGTGGCAG 43629 29 100.0 32 ............................. CTACGGCGACGTGAAAAGGATTTTGCAATTCG 43690 29 100.0 33 ............................. GGGTCGTACTGGCCTGCCCTTGACTTCTCCACC 43752 29 100.0 32 ............................. CGGATTGACCAGCGGAGGGCGACTTGGCCTGC 43813 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 100.0 32 GTTCCCCCCGTGTACGCGGGGATGAGAGG # Left flank : TCGGCGAGCGATGTGACGCCGATGAACCGCAACGAGATTCTGGAAAAGCTCAGGGAGCGTCACGGCCATGAGTTTTTGATAGGCGCCCATCCGGTTTCCCAAATGCTTCACGTGCTGGTGCGCGAAGGACGGATACTGAGTACGGGCAGCGGCAAGGCGACCCGGTACTGGCCCGCGACGCAACGCGATTTGTTTTCTATCGCGTCGGGGAAAGCAGCGTCCGATCCCGTTGCCAGAGGACTGGCTGAGCAAGTCGATCTCAGGCTGGGTGAGCCGGACGAAATATCGTCCCGTCGGCTCGGGCGCCTGGTGTCTACCGGAGCGCGTTGCGCGGTCGACCAGCAAGGACGGATCACGCATGTCTGGCTTTCCGTTTGATGGGTTTTTTCGAAAGACGGGATTGCTTTTGATGGGTTAAAAAGGCCGGTTTTGGGCACCCCAAAATCGGTACTTTTCAGCGGCCCTAAAAATTGCTCTTTTTTCAACGGATTGGAAGAAGG # Right flank : GGGCGGATTCACGGATAGGCGGGAACCTTGTTCCCGCTGTTTTCGTTTATCTTAAACGGAGGGTTCAGACGCCCTCCAATTTCCTATTATCACTGAGAGGCATTGCATTTATGGCAAAGAACATTTCCAAAATCAGAACGCTCGCTGTATCTGGTGTTTTCGCGCTAGGCCTGGGTACCGCAGGCATCGCGGCAGCCACGACGCCTGTAGATTCGTTGCCCGGCAACGCGGCCACACCGGCTTCGCCGAACGGCCCAGGAAATCCCGCCACGCCAGCCATGCCCGGAAATCCGACTGCGAAAGCTGAAGTCGAAAGTCATCGCCCGGACATCGACCAACCGGAGATTGAAAAGCCGGAGGTTGAGAAACCGGAAATCGACCGCCCGGAAGTGCAGACGCCGGATATCTCGAAGCCCGAGATCCAGCGCCCCGACGTGCAGAAGCCCCAAGTCGATCACTGAGCTACGCACGCGCCCCTCGACACGACCGGCTCGGTTCGG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCCGTGTACGCGGGGATGAGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 29234-30054 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQSG02000004.1 Acidihalobacter prosperus strain DSM 5130 contig_04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 29234 29 100.0 32 ............................. CCCGTGCAGCACATTCGCCGGCCGAAGCCGAG 29295 29 100.0 32 ............................. GCCATCACTACCCAAAATGCGAGATAGGTCAG 29356 29 86.2 32 ..A........AT.C.............. GGATCTTTTGGCTTACTCGGAGGTTGCCCAGG 29417 29 86.2 34 ...........AT.C.............T CGAGTGCGTCGCGCTCGCGCTGGCCCAGATGGCC 29480 29 86.2 32 ...........AT.C.............T TTCAGATATCCGGTGCGGTCTGGCAGGCATTG 29541 29 89.7 32 ...........AT.C.............. ATCTCGCGCGCGGCGATCACATTCGCGGGTGC 29602 29 86.2 27 ...........AT.C.............G TTTGGCGCGGCGGCCTTCGCCTTTGTC 29658 29 96.6 33 ............................T TCAATGGATTAGATGAATTTCACCCCTGCGCCT 29720 29 96.6 32 ............................T GATCCATCTGTACGGACTCTTTGTCTGACGGT 29781 29 100.0 32 ............................. CGCCCGGCTTGCGCGATCTCCATCGTTTCGCG 29842 29 100.0 32 ............................. TTTCACCGTCGCGTTCGGTGGCAAAACCGGCG 29903 29 89.7 32 .........A.................TG CAGGACAGCAGCACTTGCGCGCCATCTCGCCC 29964 29 96.6 32 ............T................ GTTCGGCTGTTTTCCGTGACAGTGCGCACTAC 30025 29 82.8 0 ...........AT.C..........T..A | T [30050] ========== ====== ====== ====== ============================= ================================== ================== 14 29 92.6 32 GTCTTCCCCGCGCGAGCGGGGGTAAACCC # Left flank : TCGACCTTGTGCATGGACGCTGGCGACCGCCCTTTGTCGCCGGGGTTTTCTCGGCACCCAACAAGCGGTCTGTGATTGCCGCGCTGCGGGTAACCCGGTCTCTTGAACATATTGTGTTCTGCGATGCCGGAGCCGGCGGGTTCCTGTTCTACAACGCCCCTCGCGTGATTGCCGCGATTGAACATCTTGCGGCCATCGCCAACGATGATCTCGTCAAGGATGAAGCCTACCAGGGTTGGCGCCTGGGCGATGATTTGACGGGTGCTCGCCATCTGAGCCTGATGGAGCGTCGTAAATTGTCGCGTCATCGGATTGAGATTGGTCTGATGCCCAGGCCCGGTACAAAAGGCGTGGATCTTTTCGATTTGACGCTCGCCGAGCGTAGATTGGTGTCCGGCGCCATTCTCGATCTAATCGGCGATCGAAAAGGCAAAAAGAAGAAGCAACGCAAAGAAGCCGCTTGAATATTTGCTTTGTTTTTCAGTTCTTTAACAATTAGA # Right flank : ACAACCAGGGCCTTTGCAGCTTGCGTTTTCTCGAAAACCATTATCCTGATAATCAGAACATCTTTTATCGGAGGATTTTACCGTGGATTTCGAATGCCCCAACTGCCACAGCCATCAGGCCAAGCGCCTCGCGCTTACCTGGGCGTCCGGCCTCTCAAATACCAAGACCAAGAGCGTCGGCGCCGGCGCCGCGCTCTTTTTCAATCATATGCCCTGGTCGCTCGTCGCCATGGTCTTCAAATGGGTCGCCATACCTTTCACCCTGGCCTTCTCATTCCCCGCCGTGTTCGTCCACGCAGGTTACTCGTGGGGCACCAGCCAGAGCGTGCTTTCCGCCGCGACTCGGCCGCCCTGGCGGTTTCGCGTGCTGCGCAGCTTGATGCAGGCCGTTTTCTTCACACTGATCGTCGGCTGGGTGTTCGAGGTGTTCGGCTTATGGGCCTCAGCCCATGCCATCGTGTCGCTGTTTCATATCAATCCTCAGCATGTCTCGCATGCCG # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTAAACCC # Alternate repeat : GTCTTCCCCGCATGCGCGGGGGTAAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //