Array 1 1730440-1728689 **** Predicted by CRISPRDetect 2.4 *** >NC_014500.1 Dickeya dadantii 3937, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1730439 32 100.0 34 ................................ CCGACCACGTTCCCGATACACCAGGTCATGATCG 1730373 32 100.0 34 ................................ ATCTATTCATCCGCTGGGCTACCAACGGCAGGTC 1730307 32 100.0 34 ................................ TGCTGCCGCGACGGGGATGCAGACCGTAAAAAGG 1730241 32 100.0 34 ................................ TCGATCACGTTTGCTGATCGCCCCAACGTAGCTG 1730175 32 100.0 34 ................................ ATAAAAAATGAAGTTAAAGATAACACTAGATACA 1730109 32 100.0 34 ................................ ATATGTGAGGGGACTTAAATGGCTACAACTACTA 1730043 32 100.0 34 ................................ CAGATATAGCAATATTTGTTTTTTGCGCAGCGTG 1729977 32 100.0 37 ................................ CCGTAGGAAATAGTCGAACGCCTGCGCACGGACTGTC 1729908 32 100.0 34 ................................ TCATCGATGGTGGCTAACCGTATGGGGTTGGATC 1729842 32 100.0 35 ................................ TCTGATTATAGTGATCACCCTAACACTGTCGGGGT 1729775 32 100.0 34 ................................ ACCAGTATGGCGAGGCGGAACAGCTGGGGCGCTC 1729709 32 100.0 34 ................................ CCCTTAGATAGCGACCGCAGTCACAGCTATGCCA 1729643 32 100.0 33 ................................ GATTTTGCTCACGATACTGCTCAGCGCATTAAG 1729578 32 100.0 33 ................................ CGGCAGATTTGCGCGCACCAGCGCCCTTGCGAC 1729513 32 100.0 33 ................................ AGTCAAGCCTGGTCGGCCGCGATGAGATAACGG 1729448 32 100.0 35 ................................ AGGATGTTGGTAATGAGATACCCGGCATCGCCGCC 1729381 32 100.0 33 ................................ CGTCGATCGCTGGGATGAGCACTGGCCGGAGGC 1729316 32 100.0 33 ................................ TACTGGGTGAACAACCAGCGCTACGACCTGATT 1729251 32 96.9 34 ............G................... CGATGCAATAATCTGGTCACGCCGACGTAGACGC 1729185 32 100.0 33 ................................ AGCTCGTTAAACACAGACTCAATAACAGCGTCA 1729120 32 96.9 36 ............G................... TTGTCGCCGTCAAGAAGGGTGCGGTGCAGGTAGCAG 1729052 32 100.0 34 ................................ CCGGCGGCATCCGTCGTGACCGCCGAATACATCA 1728986 32 90.6 32 ............G....T..C........... CCGACAATGTTTGATGATGTTGACGGACCCAT 1728922 32 90.6 34 CG..........G................... AACAGAGAAGCGCCGGGTTGCGCGCCCCAGGTCC 1728856 32 100.0 34 ................................ ATCCAGTCCGGTTTTTGTATCTGCGGCTCGGGTT 1728790 32 96.9 34 ............G................... AGCTCCGTGAGGATGTCTCGATTGCTGACGAAAT 1728724 32 87.5 0 ............G.........C......T.T | C,ACA [1728696,1728700] ========== ====== ====== ====== ================================ ===================================== ================== 27 32 98.5 34 GTCGCGCCTCACACAGGCGCGTGGATTGAAAC # Left flank : AGCATATCAACCGGAGAAGCCGCTGTATGATGGTACTCATCACTTACGATGTGTCGCTGGAAGATGCCAACGGCCCCCGCCGCCTGCGACAACTGGCGAAAATCTGCCTGGACTACGGTGTGCGGGTGCAATACTCGGTATTCGAGTGCGACGTTGACGCTGCGCAATGGGTGGTGTTGCGCCAGAAGCTGCTTACCACCTATGACGAACGTGTCGACAGCCTGCGCTTTTATCGCCTTGGCAAGGGCTGGCGTGATAAAGTTGAGCACCACGGCGCCAAACCGGCGCTGGATATCTTTGGCGATACGCTTATCGTGTAACGCTGCGCTAACCCCCGGTACTCATCATTTTCCCGGCCGGTTGGCGCAATCTCATCCAATTGAATGATAAACAATTTATTTCTGTACTTCACCGTTGCGCCCTCAGCTTCCTCCCGCAGACATGACGTTGGCGTTCTTTTAGCGCTGACGCTATGCTACAAGCGCCTTGCCCGCAAGGCA # Right flank : TTGATTCGCCGGTTAACGCGGCGATGGCGGGTCCGCTTCAAACAGCGGCAACGGCTTGCCGATGATGTAGCGCTGGCGCAGGTGCGCGGACAAGGCATCCATCAGCATCACCACCACCACCAGAATCAGGGTGATGAACATCACTACGTCCCAGTTCCACAGCCGCATGTTTTCGGCGTACACCAGCCCGACGCCGCCGGCACCGACAAACCCCAGCACCGCCGCCGATCGCACGTTGGACTCCATCTGGTACAGGCTTAGCGCCAGAAAGGTAGGAAACGACTGGGTGAAGATGCCGAAGCGGTGTTTTTGCAGGCTGTTGGCGCCGACCGCGCCCAGTCCGCGGCTGGGCGATCGCTCGACCGCTTCGTGCCCTTCCGCGTACAGCTTGCCGAGCAGACCGGTGTCCTGCATCAGGATCGCCAACGCGCCGGACAGCGGCCCCATGCCCACCGCCCGCACGAAAATCAGCCCCCAGATCGCCATGTCGATGCCGCGCA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCACACAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3985144-3985531 **** Predicted by CRISPRDetect 2.4 *** >NC_014500.1 Dickeya dadantii 3937, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3985144 28 100.0 32 ............................ GGAAACGCTGACACAGCCGGTGTTACCACCGC 3985204 28 100.0 32 ............................ CATCTGAAAACCTCCGGCCTTATCTAAATTCC 3985264 28 100.0 32 ............................ CCAGCGAAATAGCGGTTATCCTAATGCCCTTT 3985324 28 96.4 32 ............G............... TCCGTCGCCTCCGCGTTCGGTTCGCCAGGCTC 3985384 28 92.9 32 ...........CG............... GTACCGCCCCGATTTAGTGGTGCTGGATGATA 3985444 27 89.3 32 .....-.....AG............... GCTGGAGCCGATTTGCGCCCAGACACCGCAAT 3985503 27 82.1 0 ...........C.C.........-..CC | GG [3985524] ========== ====== ====== ====== ============================ ================================ ================== 7 28 94.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTCACGGAAATCCCGCCCATGGCGATATCGCACTTGCCGGACTGAAAATCCGGCATCAGGGTTTTCCAGCTGGTTTTTACCCACTCCACTTTCACGCCCAGGCTTTTAGCCAGCGATTGCGCCATAGCGATATCGATCCCTTCATAATCGCCATCGGCGCGCAGCGACGTGTACGGCTTATAGTCGCCGGTGGTGCAAACCTTCAGCACCCCTTGTTCCTGCACTTGATCAAGATGAGACGCGGCGCTAGCGCCGCCGGCCAGCCCCAACAACAGAATGAGTGAAAACCGTTTTTTCATGAGAGTTCCTTGCAAGCCTGTCAGGCAAAAGCGCCACTGTATCATGCCGTTTCTACGGCTGCCGGTTTTGACCTTTTTTTTCGCCTCGTTATAACTCATTGATTTTTAATGACGACAATGATCGACGTTAAAAAAGGGCTTTCCAGGAAAAACCCAGATTTCCCTTTAAAAATCAGGTAATAGGCGATAAATTGCTACG # Right flank : CGGTTTTCCGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTCTGACAAAAACGCTGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGAAGGGCGAGCCCCAGGGATAGGGCGAGTAAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTAGCGGCGTAGTTTAGCCTCCAGCCAGTGGTCAAGGAGAGGTGGCACCTGAACCTCTCCTTGTCGTGCGTGCGACGAAGTTGCAAAGAGAATATCGTGGTCATCACGCACGAAACATTTCACTGCACTGACATCCATTCGCTAATCAATAACAAAACAACCCTGCTGTTTGTCAACAGCCCTCGCAGCAGCGATTAACCGTTATTCCGCCGTCAGTGCCGACACCGCCCCTTTTCGCTTTTTGATGGCATAGCCGGCGGCCAGCGCCAGCAGCCAGAACGGAATCAGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3991508-3990759 **** Predicted by CRISPRDetect 2.4 *** >NC_014500.1 Dickeya dadantii 3937, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3991507 28 100.0 32 ............................ CGGATTACACCCACACGCTCGATACGCTGGAT 3991447 28 100.0 32 ............................ TCTATCGCCGACTCAGCCCTGCTGAGCGTGGC 3991387 28 100.0 32 ............................ AGCAGGTAACTATCACAATCCACCTGCTGAGG 3991327 28 100.0 32 ............................ TTGGGGAGAGCTGTGAGCTCGCCATCAATGGG 3991267 28 100.0 32 ............................ GAGCGCGTTCAGCAACGAGTGGACTACGACAC 3991207 28 100.0 32 ............................ ATCAAGCACCCATGCCACGTTACCGGCCACCT 3991147 28 100.0 32 ............................ GATCTGCTGAGTGAGCCGCTGTAAATGATGTC 3991087 28 100.0 32 ............................ AGCCTGCCCGATAACCTGTCTGTCGGCGGCTC 3991027 28 100.0 32 ............................ CGCGACTCCCAGTGCGTGAACGCGTAGACGGG 3990967 28 100.0 32 ............................ GAACGGTCCCATTCACCCCATACATCTTTCGG 3990907 28 96.4 32 ...........C................ TGATGGCCGCCGAACAGCAGGCCAGGGCAAAC 3990847 28 96.4 32 ...........A................ ATACCGATTGGGCCACCCCACGATCCTTATGT 3990787 28 78.6 0 ...........CAC.........T..CC | G [3990764] ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.8 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AGGAGCTGGCAGCACTGGAGCAGACCGGCTGGTTGAGAGGGCTGCGCGACTATACCGCCATCACCGAACCGCTGCCGGTGCCGGCGGGCGTGAAGCACCGCACGGTACGTCGGGTGCAGGTGAAAAGCAGCGCCGAGCGCCTGCGTCGCCGGGCGGTGAACAAAGGCCGGATGACCGTAGATGAGGCAGACGCGCGCATTCCCTATACGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGAAGCCTTTCCAACGGACAAACGTTTCTGCTGTTCGTCGAACACGGCCCATTGCAGGATAAACCGGTCGCCGGGGCGTTCTCCAGCTACGGATTAAGCGCGGTCGCCACCATCCCCTGGTTTTAACCCTTTTTTTGCGGCCAGCGTTAACGTATTGATTTTAAATACCGTAATCTGGCCGCCAGAAAAAAGGGTTTTTTCGTCAAAATGACGATTTTTATTTAAAAATTAGGTGGTAAGCGAATATTTACTACG # Right flank : GGTTTTCTGGCGTTAAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTCTGACAAAAACGCTGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGAAGGGCGAGCCCCAGGGATGGGGCGAGTAAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCACCAGCCAGTGGTCAAGGAGAGGTGGCACGTGAACCTCTCCTTGTCGTGCGTGCGATGAAGTGGCAAGGAAGCACCATAGCTTATCCCGCACGAAATCATTCACCGCTCCGGCATAAATCCGCCAATAACTAAAACCCCCCGCTGTGTGTCAACAGCGCCAGCCCTTCACGGCGGGCTTCGCCGTTTCCTGCGCAGGAAAAAAATCCCCCAGCCGTTGCCGGCAGGGGGAAAAGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 4000264-4001491 **** Predicted by CRISPRDetect 2.4 *** >NC_014500.1 Dickeya dadantii 3937, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4000264 28 100.0 32 ............................ ATGACTGTTGCGGCACCAGGGTCAGACGCAAG 4000324 28 100.0 32 ............................ TGACCGCCGCCGATGGTTTCGATTATCGAATC 4000384 28 100.0 32 ............................ AGGAGCCAAGCCAGTCACTGGACTACCGGACG 4000444 28 100.0 32 ............................ GTTTGCTTGCTCAATCGCAGACAGTAGCGGGT 4000504 28 100.0 32 ............................ AGCAGAACCGGCACGCACCGCGCCGGTATTGA 4000564 28 100.0 32 ............................ AGAAATATTGATGGCGCGCGACTCCTTGGGGA 4000624 28 100.0 32 ............................ TGTTAACCCAGGTCCTCAAATTCATCATTGGT 4000684 28 100.0 32 ............................ TAAACGCCACTGGCTCTTTCGCCGCCCTGTCA 4000744 28 100.0 32 ............................ TCAGCCAACTCCATGCGATTACGTGGACGAGC 4000804 28 100.0 32 ............................ TTCGTCATACCACGCGGATACATCATCGCCGT 4000864 28 100.0 32 ............................ ACCGCCCGTCGGCACCTGGGCGACGAACTTTA 4000924 28 100.0 32 ............................ TATTATCCGGCTTTGGGATGTACACCGGCTTC 4000984 28 100.0 32 ............................ TCAGGCGGAAGAACGTCGGGATATCTCGTCAA 4001044 28 100.0 32 ............................ GCGGGAACTAACACCACTCAGTTGGCGACAAC 4001104 28 100.0 32 ............................ GTACTGAGCCGAAAGAACTCTTTGGCTTAATG 4001164 28 100.0 32 ............................ AAGCGGAACATCCCCGTTCCACCACATGCGCA 4001224 28 100.0 32 ............................ ATCACCAGCGCGTCGAGGTTGTCAAAGTCGCC 4001284 28 100.0 32 ............................ AATGAGCGCAAGCTGATTACTGGGTATGCAAA 4001344 28 100.0 32 ............................ AACTGGTCATGAAGCCGGTCAAGGAAGGGCGA 4001404 28 100.0 32 ............................ GTGGCGCTCGATGCCGTGGCGCAGTGCGTCGG 4001464 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 21 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GGCTGAATACGTTATCCATAAAACAGACTCCCTGCCGTAGCGATAGACAAACACCACCCGCGCAATAAAACGCAGGCTAATAATTAATTGAAAAATACGGATACCCTAAATAATTCGAGCTGCAGCAAGGCGGCGACGCAGCGAATCCCCGGGAGCTTACTCAAGTAAGTGACCGGGGTGAGCGAGGAAAGCCAACGCACCTGCAACTTGAAGTCACCAGTGTCCTGATTTATCTTTTCCCATTTAGAAAGCCAACGCACCTGCAACTTGAAGTATGACGGGTATAATCCACTGGAAAGTAACGAAAATCAGCCTATCACAGCCCAAACAGGAAAGTGAATGACGCCCGAAATACTTTTCCCGCCGCTATACCCTTTTTTCAACCGTCTTTTTCGGCATTTAAAAATCAATAAGTTAAAGGTAGCCGAGAAAAAAGGGTCTAACGGTGAAAATCGCCAATTGCGGGTCAGAATACAAAGGGTTAGAGTCAACTCGCTACG # Right flank : ACTCAACTGAGCGAGTTATGTGACCTGCAAAATGTTCACTGCCGCACAGGCAGTATCCCTCCCCGGCCGGGGAGGGATACGTCGGTCAGAACGACGTCCAGTCGTCATTGGTGCCGGCGGTGGTGGCGGCACGTTTTTCGGTTACGTTCGGGCGAGCAGAAGGCAAGGCGTGGGATAACGCCGTCGGCTGGCGGACCGGCGACGGCGCGCCGTTGCCGCCCTGCGGCGTCAGGCGGAAGGCGCTGACCGCTTCGGCCAGCAGCGACGCCTGCGATTGCAGCGACAGCGCGGCGGACGCCGACTCTTCCACCAGCGCCGCGTTCTGCTGGGTGGTGGTGTCGATTTGCCCGACCGCGATGTTGATCTGGCTGATGCCGTCGCTCTGCTCATGACTGGCCTGCGAGATCTCGTTGATGATGCTATGCACATCTTTAACGTGACCGGTTAAGCCATCCATGGTGGATTCGGCGGTATCCACCAGTTGCATCCCTTCCTGAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //