Array 1 1178363-1178727 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE332518.1 Treponema maltophilum ATCC 51939 aczIZ-supercont-complete, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1178363 36 100.0 30 .................................... CAAAAAATCATAAAACGCGCGCGGCCGCTT 1178429 36 97.2 30 ................G................... CAAAAAATCATAAAACGCGCGCGGCCGCTT 1178495 36 97.2 30 ................G................... CCTCTTGAAAAACGTGTACGATATTGAGCG 1178561 36 100.0 30 .................................... CAAACCAGCGGCGGATAAATCAGCAACGGT 1178627 36 100.0 29 .................................... TGCACACCATGGCAACGTTTAACGGATGA 1178692 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 99.1 30 GTTGCAGGTTGACCAGAAAAATTAATCAGGTATAAT # Left flank : CATAATATACCTCCAATTCAATTCCTCTTATAGTTTCCTCCCAACAGGCAACCCAATGGTAAGAAAGATGGCAGTGATATTTGTTTTTTCCCAGCATACTGAAATTCGGCCAGCATTTTTGTATCGGGCCGCTTTCCTCCAGATCTTCAAGCAGGTAGGAAAACAATTCTTGTTCCTTTTCAGGCATTTTCAAAACTGCTTTCTGTATCTTCTTTTTTTGTATTACCCTGTACATTTGTCTGCCTATTTTTATTATAACCATATATTGGTTATAATGTCAAGTTTTTTCCTCTTTGCGTACCGCAATTTTTTCTCTTTGTGCATCGATACTGTGAACGGACTGCCGACCGGCGACTTTCTCTTTTTCCTGTCCAATCGCAGGCGGAAGCCCTGCAATGTTTTTTCCGTTGTACAGCAATTCATAATTAAACAAGGTTTTACTGGCAATGGCTTTTTCGGTCTTTATAATAACCGTACTAGGGCGTTACGGCTGGCGTTTA # Right flank : TACGTCCGGTGTAAACCGTTGCCATGCAAGGAGATGGTTTGTGCCGGGCGTGTTATTTTTAAACGAAAATCAGAATAAAAGGAACTGCCCCGGCTGTTTTTTTTGCTGTTTTTCCCCTGCATTATAACTGATAATATTGCCATATTGTCTGTCCGTTATCGTGATAATATCAACTTTTCCCTTTATCGGCAAGTTATCGTGTATCATTCTGTAATATTTTTCACAAGCATCTTTTCCCGAAAATAATTTTGTATAAATGGAATATTGAACCATTGAAAAACCGTTATCCAATAAAAATTTTCTGAATTCCGTAGCATCTTTTCGTTCTTTTTTTTCAATGACCGGCAGGTCGAACAGTACCATCATCCACATAAGTTCATACTTATTCAAAATCAAGTCGCGCATTTTCATCTCCGTCCCATAGGGGCAGTTCGATATCCGTTTTTTTGCTTTCCAGCGCACGTGCATAGGTATTTGCCATATATTGCATACTTTGAAAC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGGTTGACCAGAAAAATTAATCAGGTATAAT # Alternate repeat : GTTGCAGGTTGACCAGGAAAATTAATCAGGTATAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTGCAGGTTGACCAGAAAAATTAATCAGGTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1949416-1948673 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE332518.1 Treponema maltophilum ATCC 51939 aczIZ-supercont-complete, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 1949415 30 74.2 34 TC.....T-...AATA............... TGGTCGGCGGAACACCTTGCCAATCTTTCAGCAT 1949351 31 100.0 36 ............................... CCGCCAAACGGATACGGTTGTAAGTGTTATACACGT 1949284 31 100.0 33 ............................... ATCGGAGATAGCCGCTTTTGCTTTTTGCAGATG 1949220 31 100.0 35 ............................... AGATAGGCGTTAATTATGATTACAAATAAAACAAT 1949154 31 96.8 33 ............G.................. TTGACGCTCAATACTTCGGCGTGCCCCAAAGGC 1949090 31 90.3 33 A.....T............C........... ATGATCGCGGCCTTTTTTGACAATAAAACTAAA 1949026 31 93.5 34 ..........T........A........... AATTCAACCTGCGTATCGTATGCTTTCATGTTTT 1948961 31 100.0 33 ............................... CATGCGGCGGATTACTTCGCGCGCTTCCCAGTT 1948897 30 93.5 35 ...T............-.............. ATGCAAAAGCCTGCGTGCATTTAACAATTCATCTT 1948832 31 100.0 33 ............................... ATTGTCTTTCGGAACTTTTTTTATTTTGAATGT 1948768 30 90.3 35 ...........GG......-........... CGAAAGGAAATAAGCCGGGTTATGAAATGTCCCAC 1948703 31 77.4 0 ....................G.G...TTTCT | ========== ====== ====== ====== =============================== ==================================== ================== 12 31 93.0 34 GTCGCTCCCTCACGGGAGCGTGAATTGAAAC # Left flank : GAAAACCGGGCGTTTTGCACGGCTTCCGCAGCTATCTTTTGCAGGACGAAAAGGGAGAGCCCGCTCCGGTGTATTCGATCGCGTCCGGGCTCGATTATCCGGGAAGCGGTCCGGAACACTGCATGCTGAAGGATAAAAAACGCGTTGAATATACGAGCGTGAACGACGAGGAATGTTTGGAAGCCTTTTATAAATTATCGCGCTTTGAAGGCATTATTCCCGCGCTCGAGAGCGCCCACGCGGTTGCTTATGCGTTTAAGTATGCCGCACAGCACAAACGCGAATCGATTTTGGTAAACCTGTCCGGTCGCGGCGATAAGGATATCGACTTTGTCGTGGACAATTACGGCATAGGCGAAAAATACGCCGGATGATAAAGAGCTGTGCGTGCTGTCGGTTTTCCGTGTTTGCGGGCCCCTTGCCGATAGCCGCACGCTTCTTGTCGATATCCTGCTTGCCGGCATTTGCCGAGCAGCATTATAAAAAATATGTGCCGCACT # Right flank : GTATACTGCCGTCTATCCCTCTATTTTCATGTCCCGCGCGAGGTCGGCGGCAGGAGCCCATTCGGTGCGGGCGCGGAACACGTCGCTTCCGTCATCTGCTCTTATGATCGAATGCACGCAGCCGTTGTCGCCGGTTTGCTTGCAGCGGCACACGAGCTTTTCGCCGTACAGGGCCGACGAAATAAAGTTCGTTTCGAGCGAACGGAGTAATTTGCCGCGGCAAAAGTCCGCATTCATAAACGATAAAATCCAGCGTACGTAATTCAAATTGTTTACATGGGAGTTTACGTCGATATCCAAGAGCGAGGGGCTGAAGGTTTCCTCAATATCCCAATCATCGCTCAAGGCGATTTTATTGAGCGAGGCGTTTTCCATGCGCTCGTCGCAAAAGGTGAGGCCTCCCATCGTATGTGCATCGGGTTTTATGAGGCGGCCCGATGCCGAATCCACAATGAGCCAGCATGAAGTTGCCCGCATGCAGGGACTTGCTTCGTCGGCTT # Questionable array : NO Score: 8.60 # Score Detail : 1:0, 2:3, 3:3, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTCACGGGAGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.42 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //