Array 1 166469-165298 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGESR010000003.1 Salmonella sp. 3203110320160044 NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 166468 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 166407 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 166346 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 166285 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 166224 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 166162 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 166101 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 166040 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 165979 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 165918 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 165857 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 165796 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 165693 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 165632 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 165571 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 165510 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 165449 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 165388 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 165327 29 96.6 0 A............................ | A [165300] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 184582-182601 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGESR010000003.1 Salmonella sp. 3203110320160044 NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 184581 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 184520 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 184459 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 184398 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 184337 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 184276 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 184215 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 184154 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 184093 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 184032 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 183971 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 183910 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 183849 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 183788 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 183727 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 183666 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 183605 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 183544 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 183483 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 183422 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 183361 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 183300 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 183239 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 183178 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 183116 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 183055 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 182994 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 182933 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 182872 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 182811 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 182750 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 182689 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 182628 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //