Array 1 1-219 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811480.1 Actinomyces sp. HMSC065F11 Scaffold127, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ===================================== ================== 1 27 100.0 37 ........................... AACAAAACGGAGACTTACAGGCACGGCCAGACAAGTT 65 27 100.0 37 ........................... AACAAAAGGCGCTTCTCCGTGGCAGTCAGGTCAAGTT 129 27 100.0 37 ........................... AACGGTGATCTCTTCGGTTTCACCAGGATGCCAAGTT 193 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ===================================== ================== 4 27 100.0 37 TATCAAGGGGAATGAAGACTGATTCCC # Left flank : | # Right flank : | # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATCAAGGGGAATGAAGACTGATTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 57720-56653 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811484.1 Actinomyces sp. HMSC065F11 Scaffold199, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 57719 29 100.0 32 ............................. GGCTAACGCGATCCAGAGCGGGGCTGTGGCCT 57658 29 100.0 32 ............................. GAATTGCCAAAGCTAGCTAGCGCGCTTGGCGT 57597 29 100.0 32 ............................. AGACGGAGAGGTGTGGCCGAGTAGTGTCTGGA 57536 29 96.6 33 ............................A CTTCGAGACAATGCCCGTCCTTAAAAACGCGGG 57474 29 100.0 32 ............................. CGCGTCACCGACCTTTTGTGGTCTGCGTTTGG 57413 29 100.0 32 ............................. GGCTTCGTGTACGTCCACGATGGGAGCATTTT 57352 29 100.0 32 ............................. GCTCGAAGCGTCATGAGTACTCGGATGAGTTC 57291 29 100.0 32 ............................. GCGAGGTGGACTAGCTCAGGTCTTACGATTTA 57230 29 100.0 32 ............................. CGATACACCTACAAGGCCGGGGAAACCACCGG 57169 29 100.0 32 ............................. GTGATTAGCGTTGTTTCGCGCGAAAAAGACGG 57108 29 100.0 32 ............................. GAATGATTACTATTAGGGATTTGACGGACAAG 57047 29 96.6 32 .............C............... AGCCTGGTTCGCCCAGGGTTTATTATCTCTGC 56986 29 96.6 32 .............C............... GAGGGCAATCCGTTCCCCTTCATTGCGGCTAT 56925 29 89.7 32 ...C.........C..............G GCCGTGTACGACATCGGCGAAGAATTCGACAC 56864 29 86.2 32 ..CC......................GG. AGAAGGTAGTAGGCACGCCACAGGATGGAGAC 56803 29 93.1 32 ..CC......................... AAAGGAACAAGGCAATGAACACCTTGCAAGTC 56742 29 100.0 32 ............................. TAGCCGTGTTGGTTTTATTGATGTCTCCGCCA 56681 29 89.7 0 ...C.........C...A........... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 97.1 32 ATGTTCCCCGCGCATGCGGGGATGACCCC # Left flank : CATGTTCCCCGCGCATGCGGGGATGACCCCCCCGATCGACCAGCCAGTAACTGTTGAAGCCGATGTTCCCCGCGCATGCGGGGATGACCCCTCAAATACCAGCCGGTAGTTGCTTTTAACACCATGTTCCCCGCGCATGCGGGGATGACCCCACGGGCGTGCGAGTAGGTAGGGTTTCGGGCAGATGTTCCCCGCGCATGCGGGGATGACCCCAGTTGTCTTAATACTTTCGTGCCCCAAACGCCATGTTCCCCGCGCATGCGGGGATGACCCCCCGCCCGCGAACGTTCAATTCCTGTCCTACCCATGTTCCCCGCGCATGCGGGGATGACCCCAGTCATTAAACTTCCTTTCCAATCAAAGACAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCATTAAACTTCCTTTCCAATCAAAGACAA # Right flank : GCCACTAATGACGTGGCTGGGCTACTCGCTGCATGTTCCCCGGAAGAAAACGGGATAAATCAGTCCAACTTCCGGGAGACAGTTCAAAATGGTCAAGGGGCTTTGAGAGAAATAGAAGCGATTATTCGTCCGGGAGCATATCCATAACCACATCGAAAAGCTCGTCACTAGGGGAAGACGACACAGGGTGCACTTCCCCTTGTGAATCAACCAGAATGCACATCAGTCCTCCCATAACGGGAACGTCTGAACCGGTATCCAAGTCAAAGAGCTCATACTCGTCGTCAGAATATGTTTGTTCAAGGAGCACGCTTTCAGGCGGGTAGATCCCGTATTCGATTTTCTTATCAAGCCATTTTTGTGCAGCGTCGCGACGTGACATGTTATTTTCTCCTTGGCTCCGGTACGGATACTACTTCTAGAATGCCGTGCGTTAGTGCCGCATTGTCAAGGCTTGCATAGCCTAGGCCTACTTCTTTTGGCCTTGCTCGAGAACTGGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCGCATGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 58341-57885 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811484.1 Actinomyces sp. HMSC065F11 Scaffold199, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 58340 29 100.0 32 ............................. CCGCGTGTATTTGGATACTCACCACGTGAAAA 58279 29 96.6 32 ............................T ATAAACGGCTAGGCATGGGCCTACCGCAAACC 58218 29 100.0 32 ............................. CCCGATCGACCAGCCAGTAACTGTTGAAGCCG 58157 29 100.0 32 ............................. TCAAATACCAGCCGGTAGTTGCTTTTAACACC 58096 29 100.0 32 ............................. ACGGGCGTGCGAGTAGGTAGGGTTTCGGGCAG 58035 29 100.0 32 ............................. AGTTGTCTTAATACTTTCGTGCCCCAAACGCC 57974 29 100.0 32 ............................. CCGCCCGCGAACGTTCAATTCCTGTCCTACCC 57913 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 ATGTTCCCCGCGCATGCGGGGATGACCCC # Left flank : CTGTGGCTGCTGGTACGAACTACGCTGATTTCTAGGGCTTTTCATGATGGTTCTGGTAACAACTGCAGTGTCAACGGGTTTGCGTGGCGAGTTGACGAGGTGGTTGCTTGAAGTGTCGCCAGGAGTTTTTGTAGGAACGGCGTCTGCACGAGTTCGAGATCAGATTTGGGCGTTTACTTGCGAGAATATTGGTAGCGGCAGGGCCACCTTGATCTTTCCTCAAAGGAATGAGCAGCGTTTAGGGATTAAGACGATTGGTGATGCTTGGGAAGCTACTGACTTTGATGGCATGACTCTCATTCGTAGGCCTGACCTGTCGGACAAGGAAGTTACGGGCAAAGTGACGGATCGCGCGAAGGTGCGCGAGGCTTCGGGATGGTCGATTGCGGGGCGTAGACGTTACTACAAAAGCTCGATCGAGCGTCGGCAACGCAAATAAAGTTGGTCAGAAACACGGTTATGATTTAATTAATTCCTTAGGAAATCAACGATTCCTAAGT # Right flank : AGTCATTAAACTTCCTTTCCAATCAAAGACAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCATTAAACTTCCTTTCCAATCAAAGACAAATGTTCCCCGCGCATGCGGGGATGACCCCGGCTAACGCGATCCAGAGCGGGGCTGTGGCCTATGTTCCCCGCGCATGCGGGGATGACCCCGAATTGCCAAAGCTAGCTAGCGCGCTTGGCGTATGTTCCCCGCGCATGCGGGGATGACCCCAGACGGAGAGGTGTGGCCGAGTAGTGTCTGGAATGTTCCCCGCGCATGCGGGGATGACCCACTTCGAGACAATGCCCGTCCTTAAAAACGCGGGATGTTCCCCGCGCATGCGGGGATGACCCCCGCGTCACCGACCTTTTGTGGTCTGCGTTTGGATGTTCCCCGCGCATGCGGGGATGACCCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCGCATGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 148036-147807 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811484.1 Actinomyces sp. HMSC065F11 Scaffold199, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 148035 36 91.7 28 NNN................................. GAAGAGCCAACGACGCGCTTCGCGGTAG 147971 36 100.0 28 .................................... CGTGCCACTGTTGCTTTGTGAGGTTGTA 147907 36 100.0 28 .................................... GCCAGCCGCACGCACTATCAACTAGGCG 147843 36 88.9 0 ..............................G.G.GG | C [147812] ========== ====== ====== ====== ==================================== ============================ ================== 4 36 95.2 28 CAAGTTTATCAAGGGGAATGAAGACTGATTCCCAAC # Left flank : TCAAGGGGAATGAAGACTGATTCCCAACGTTAAAGCCAGTTAGCGAACCACATTGACAAGTTTATCAAGGGGAATGAAGACTGATTCCCAACAGTCTGCCTCCTCATCGGTGAAGGCGTCCAAGTTTATCAAGGGGAATGAAGACTGATTCCCAACGCTCCATCCACGAAGCGCGGCCACTCAACAAGTTTATCAAGGGGAATGAAGACTGATTCCCAACTCGGTTGGTGCCCAGTGGGTTTTCAAGGCAAGTTTATCAAGGGGAATGAAGACTGATTTCCAACGTTGTTCCGTAGTCAATACCCGCGGCGACAAGTTTATCAAGGGGAATGAAGACTGATTCCCAACTTCCATTTCTTTGCCGGGTGTAACAAGTTTATCAAGGGGAATGAAGACTGATTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GCCCCGACCTGCTGGTCGAGGCCCCCTTGGCAGTAACTAGGCTTACGCCTCTAACACTGATTTTGGAAGGCGATGTACCGTCACCGCACCAACCGCGTTGAAGGGGTGTAGCGGGTCCGGGTTCTCAGAGCCGGTGGGCCCACCGAGCTCCGAGTGTGCCAAGGCGCTCATCACCACGTAAGCATCGCCCGCGTCCCAACCATTATCGATGGTAAGGAAGTCAAACATATCCTCATAGCCGTTAGTGATCGACTGCTGCACCGGGTTTCCAATACCGATGAAACACCACTCATCGGCCGTCTCGATGCGGGGTGCGCGAATCTTCTTACCCTTAACCAAGTCAACCTCAACTACAGCTACACCCTCGGCCTCGATAGCCACAAAAGAGGACTCGCCGCGCGCCATAATCGCGTGAATATCACCGATGGAAAGATAAGCGCCCTCCACCTCAACAGGCAGATACACGGTCGATCCTGGCTTCGCGTCGGTCAGATCCATGT # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTTTATCAAGGGGAATGAAGACTGATTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 148608-148188 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811484.1 Actinomyces sp. HMSC065F11 Scaffold199, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 148607 36 100.0 28 .................................... GTCCTCACCTACGCGCAAACCCTCGTTC 148543 36 100.0 28 .................................... GTTAAAGCCAGTTAGCGAACCACATTGA 148479 36 100.0 28 .................................... AGTCTGCCTCCTCATCGGTGAAGGCGTC 148415 36 100.0 28 .................................... GCTCCATCCACGAAGCGCGGCCACTCAA 148351 36 100.0 28 .................................... TCGGTTGGTGCCCAGTGGGTTTTCAAGG 148287 36 97.2 28 ..............................T..... GTTGTTCCGTAGTCAATACCCGCGGCGA 148223 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 7 36 99.6 28 CAAGTTTATCAAGGGGAATGAAGACTGATTCCCAAC # Left flank : TCAAGGGGAATGAAGACTGATTCCCAACACTCGACGCGAAACATCTCCGCTATTCGCAAGTTTATCAAGGGGAATGAAGACTGATTCCCAACATATTTCGGGTGGGTGACGTGGTGGAGGCAAGTTTATCAAGGGGAATGAAGACTGATTCCCAACATTGCCAGGCCGGACGCTAGGACTTCTTCAAGTTTATCAAGGGGAATGAAGACTGATTCCCAACTAGCCCAAACGAAGCCGGCGCTCCCGGCCAAGTTTATCAAGGGGAATGAAGACTGATTCCCAACTTGCTAAAGGCGCTTTGGCCGTGCTGATCAAGTTTATCAAGGGGAATGAAGACTGATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAAGGGGAATGAAGACTGATTCCCAACGCCAGATCGGGATGCCACGGTCAGCTAT # Right flank : TTCCATTTCTTTGCCGGGTGTAACAAGTTTATCAAGGGGAATGAAGACTGATTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTATCAAGGGGAATGAAGACTGATTCCCAACGAAGAGCCAACGACGCGCTTCGCGGTAGCAAGTTTATCAAGGGGAATGAAGACTGATTCCCAACCGTGCCACTGTTGCTTTGTGAGGTTGTACAAGTTTATCAAGGGGAATGAAGACTGATTCCCAACGCCAGCCGCACGCACTATCAACTAGGCGCAAGTTTATCAAGGGGAATGAAGACTGATCTGCGAGGGCCCCGACCTGCTGGTCGAGGCCCCCTTGGCAGTAACTAGGCTTACGCCTCTAACACTGATTTTGGAAGGCGATGTACCGTCACCGCACCAACCGCGTTGAAGGGGTGTAGCGGGTCCG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTTTATCAAGGGGAATGAAGACTGATTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 5 148824-149115 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV811484.1 Actinomyces sp. HMSC065F11 Scaffold199, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 148824 36 100.0 28 .................................... GCCGGGAGCGCCGGCTTCGTTTGGGCTA 148888 36 100.0 28 .................................... AAGAAGTCCTAGCGTCCGGCCTGGCAAT 148952 36 100.0 28 .................................... CCTCCACCACGTCACCCACCCGAAATAT 149016 36 100.0 28 .................................... CGAATAGCGGAGATGTTTCGCGTCGAGT 149080 36 91.7 0 .................................NNN | ========== ====== ====== ====== ==================================== ============================ ================== 5 36 98.3 28 GTTGGGAATCAGTCTTCATTCCCCTTGATAAACTTG # Left flank : TCAGTCTTCATTCCCCTTGATAAACTTGTTGAGTGGCCGCGCTTCGTGGATGGAGCGTTGGGAATCAGTCTTCATTCCCCTTGATAAACTTGGACGCCTTCACCGATGAGGAGGCAGACTGTTGGGAATCAGTCTTCATTCCCCTTGATAAACTTGTCAATGTGGTTCGCTAACTGGCTTTAACGTTGGGAATCAGTCTTCATTCCCCTTGATAAACTTGGAACGAGGGTTTGCGCGTAGGTGAGGACGTTGGGAATCAGTCTTCATTCCCCTTGATAAACTTGATAGCTGACCGTGGCATCCCGATCTGGCGTTGGGAATCAGTCTTCATTCCCCTTGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATCAGTCTTCATTCCCCTTGATAAACTTGATCAGCACGGCCAAAGCGCCTTTAGCAA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAATCAGTCTTCATTCCCCTTGATAAACTTGAATCCGCCGGCGACGCCGAAACCACCAGGTTGGGAATCAGTCTTCATTCCCCTTGATAAACTTGAGAAGAGGCGTAGGCAATATGCGTTGATGTTGGGAATCAGTCTTCATTCCCCTTGATAAACTTGAGGCCCGCAAATTCTCGTTGAATTTGCGGGCCTCAAGAGGTTTTTAACTCAGAAAAAAGCAAGCTGTTCGGGAGCTTTTTCTGGTTTCTCTTCCACTGCGTTGGAATATTTAGCCATCCCGGACCATTGTTTGTCAGTCAAAAACAAGATCCGAACCTTGCCTCCATACGGAATGTTCGATTTGATAATCCTAAGCATGCGAGTGTCACTTCCACCCGCGGGCGTATACCGCGCATAGATGG # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAATCAGTCTTCATTCCCCTTGATAAACTTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //