Array 1 85608-87718 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVMA01000002.1 Akkermansia sp. BIOML-A39 scaffold2_size246477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 85608 31 100.0 34 ............................... CACCAAAACACCACACCGACTAATACCCCTCGAC 85673 31 100.0 34 ............................... ACTTGATAGACGCCGTGAATTCGTCCTAGACACG 85738 31 100.0 35 ............................... GCGTAAAATTCAAACACCTGGATAACACGCTGATA 85804 31 100.0 34 ............................... GGGAACGCCAAGGTTCGCGGGGACGCCGAGGTCT 85869 31 100.0 33 ............................... ATACCACACGTTGTTGGGATCATCCTCAAAGCT 85933 31 100.0 34 ............................... TGCGTGCATACCGTAACGCAGGGGGCGTCCAGCG 85998 31 100.0 34 ............................... CGTTTCCAGCACGGGCGGGAATCGCGCGTTGGGA 86063 31 100.0 34 ............................... TCCGAATACCTCCGGGGCGCCAAACATGTAAGTT 86128 31 100.0 34 ............................... TCATTTGCAGGGGTCCATCCTTCCTTCCCGGATG 86193 31 100.0 34 ............................... TGGTTCGAACTTCCGCATGATAGCACCTTTCTGA 86258 31 100.0 34 ............................... CCACCTTACGCCTGCGGATGTTCACTACCGGAGA 86323 31 100.0 34 ............................... AGCTGTGCTACATAGCCCTGTTGTTTCTTCGTCG 86388 31 100.0 34 ............................... GTTCCTGTCATAGACAAGGAGGCTATCTACGCCA 86453 31 100.0 34 ............................... CGGCATCATTTGGAGTCATGATCTGACCTTGCCA 86518 31 100.0 33 ............................... TCTTGAACAGGCATTACTGTCTCAGGCTGAGCA 86582 31 100.0 34 ............................... TATGAAGCCTGGGATGAGTGGGCTAAGGAGTGGA 86647 31 100.0 33 ............................... CGCCGCCCGGAGGCGGCGGAAAAACCGCATCAG 86711 31 100.0 35 ............................... CAGGAGTTTTTCCTGGGCTTCCCTTCCGGCCAGGG 86777 31 100.0 35 ............................... AGAATTCGAAGCGGAAGTCCGATAATACTGCAAGA 86843 31 100.0 33 ............................... CATGTCCAGCAGCAGGAGGCGAATGACGCCGCC 86907 31 100.0 35 ............................... TGGATGCGGGAAGTCGTATTGGAAAAGCGCTCTCC 86973 31 100.0 34 ............................... ATCATGATGGATGGTAAGCAAGGCAAGGAATCCT 87038 31 100.0 35 ............................... GAGCCGCAAAGCGAGGACGGGCGTTTTAAAACGGA 87104 31 100.0 34 ............................... CCAATCTGTGCGGTCGGAAGTTGGAATTTTATTT 87169 31 100.0 34 ............................... ATTTTCATTTTTCAATTTGAGAATGGAGAGGTGA 87234 31 96.8 34 .............A................. TTTACGGCGGTGGAGTTTACCGGGTTGAAGAAGT 87299 31 96.8 34 .............A................. TTCCGGGCCTCTTCCGTTTGCTGCCCGCGCTGCG 87364 31 96.8 34 .............A................. GTATTGGGTAGAGAGCAAGATGGTGAAGGGAGGG 87429 31 96.8 34 .............A................. AACGGAAGTTTCTGGAGAAGGCGCATGGCCGCAA 87494 31 96.8 33 .............A................. GTTTAAATTATCCATATGATTTAATTCTATGAT 87558 31 100.0 33 ............................... GGCGAGAGAGTTCGAGCGTAGCGGCCAGAAAGA 87622 31 90.3 34 ....................C.A.......G TCAAAAAAGGGATCCAGGATCAAAAAGCTGGACA 87687 31 71.0 0 ......T...........TA.TT..AT..CA | A [87703] ========== ====== ====== ====== =============================== =================================== ================== 33 31 98.3 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GAAAACGATCCTTCCCTCAAAGACACGGTGACCATCCGCCACCGCGACTCCATGGAACAAGAACGCGTCGCCGTTAAGGACCTGTTGCACTGGCTCATTGCCCGTGTGCGGTAATATGTTCCTTAGCGGAATTAAATATTGTAAATACTCCAAGGCCGTTCCGCTCATGGCGGAACGGCCTTCTGTTTTCCAGAACTTGTAATGAAAGGAAAAGTTGCTGGACGGCGCATGAATGAATGTCTAGCATTCAGGAGATGCAGGTTGTACAGGCAGGCGGAAAACAATGATCTCAACACTTGTTGAAAATCTGCTGTTCTGTTTGCGCCAACCCCAAGCTCACAGGAATTCCCCGGAAGTTCGGCGATTGCTGTAAGTCATTGGAAAACGAAGTTTGACATATCCAATTACAAAATTTAAGTCGTGCGGAATATCGTGATGGAGAGAAGTTGGCGCAAAAAGCCTTCTGCGCTGTTCTCTCTTAATGGATATTTCCTCACGCT # Right flank : AAGACAGAAAGAATCTAAAATGCTATTAAAACAATGAGTCCCCTCAATAGAATTTTCTAAAAACGGAAGTGTTTAGTAAAAAGTATTGAATTGTTCTGGAAAGAGTGGGTGACTCATTTACCATATCATAGTATGAAGAAATAAATATTGCCCCAATTTTATTTAGAGGGGTTAGTTTACAAGGGAAAGGTAAAGTCTAAATTATAAGTAAATTCAAAGCCCGGCCTATTTTCAATGAAAATAGGCCGGACAGGAGAGATTAAAATCCATCAATTTCTTCTGGGGTCAATCCCTGAAGTTCTTTCAATTCATAGGTACCATCATTATTGACAATGAGGCTTCTATGGACTTTTCCAGAAGAATATTGACCTGCAGGGCAGGAATGTTTCCACCAGATCACTTTCTTCACTTCCATGCTTCCTTCAGGCCGGGAGGAAGAGGCATCCCCTTCAAACATAAAAGGAAGAGTATTTTTTAATAATTCTGCATCTTCATCACTA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 96229-97197 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVMA01000002.1 Akkermansia sp. BIOML-A39 scaffold2_size246477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 96229 33 100.0 33 ................................. CGGAATCCGTTGCGACGCTGAAGGGGCCATGGC 96295 33 100.0 33 ................................. CCCCGGCAAAAGGAGGGGACGAAAAGACCTGGA 96361 33 100.0 35 ................................. GCGTTGAAGAAATACAGGTACTTGTGCTGAAGAAG 96429 33 100.0 35 ................................. CGGGTGTACTATCTCGCGCCTGACCTTAAAATTGA 96497 33 100.0 33 ................................. TTGCAGGAAGTTATTCCTGGTACTCCTGATGCT 96563 33 100.0 34 ................................. AGGCTGCTGCTGTTACGGAAGCAAAGGCGGCGCG 96630 33 100.0 33 ................................. CTGACGAACTCATTGAAGATATTGTACACCTGG 96696 33 100.0 34 ................................. CGGCAATTTTGTGTCAACTGACGTGCCGTTCAAA 96763 33 100.0 35 ................................. AAGACGTGGAGTAGCGTACTTGATAAATTCCGAAA 96831 33 100.0 33 ................................. ATGAAGCAGGAAATTGCAGTACAGGCACCATCC 96897 33 100.0 34 ................................. GTATGAATCTCCCACGCACTCTTCTGTTCCGTCT 96964 33 100.0 33 ................................. CGTGAAGGTGGAAGTGATTGACGGCGCAGGAGA 97030 33 100.0 33 ................................. ATAGGCTAGAGAGCGGACCGGCGTGCGGATGGG 97096 33 100.0 34 ................................. GAGAGGGAGGCGGATGAGGTGTCTGCGGAGAGCG 97163 33 81.8 0 ...................C....AC...T.CG | GC [97185] ========== ====== ====== ====== ================================= =================================== ================== 15 33 98.8 34 GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Left flank : TTTCTCTCCATGTATATTCTCATCACCTACGATGTTGTTACGGAAGACAAGGCCGGCCAGCGCCGCCTGAGGCGGGTTGCCCGTGCTTGTGAAAACATCGGGCAGAGAGTACAGAATTCCGTGTTTGAATGCGAGGTTTCTCCGGCCCAATTGGTTGAAATCAGGAGCAAGTTGCTTAAAATTATTGATCAGGACAGTGACAGCCTCCGGATTTACCACATGGGGTCCAATTGGCATCATAAAATCGAACAATTAGGCAAGGAAAAGAGCTATGACATTTCCGGGCCGTTGATCATTTGAGTGCTGTTTGACATGGCCTTTGCGCCAACCCCAAGCTTACATCAAATTGCCGGGAAGTCGGCGATTCTTGTAAGACATTGGAAAACGCAGATTGACAACCAAGTATGATGAAGAGAAGACGGTATGTGATGTACCGTCTTCGTGAAGTTGGCGCAAAGCCCCGCTTGCATGATTGATTAACAACATGTACCGTTGGGGCA # Right flank : GATGATTAAAAAGCACCCCGGACCAGATAAGTCCGGGGTGCTTTTTTGTTTTCTGCCGAAGGAGTCAGGGAATGGGTCGATCTTTCGGGTTGAGTTCGGCGGGCGGCAGGGAACGGAGCAGGGCCAGCAGGGGGTCCTGCACTGCGGTTCCTGTTTCACTCTGGCGTTTGAATTCCTCTTCTTCCTGCTGGAGGGCGGCCAGTTTGGTGTCTTCCACCAGGGCTTTGAATTTGTCTGCCTGGGAGTATTCTCCGTCCGTATCCCGGAAGACACGGGCAAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGATCGTTCATGAGTCCGGCTGTGTTTGTTTGTCCAGCAGGTTTCCGGCCAGTTGCCTGCCTCTCTCCGTAGAGCGGTAGACATAGGGACGGCAGTCCCCGAAGCGCTCCACGTAACCCTGCGCGATGAGGTCCTGCAAAATGTTTGTAACGGTGTTGGGGTGCAGCCGCGTCGCTTCCGTGATGGTGC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 141657-140423 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVMA01000008.1 Akkermansia sp. BIOML-A39 scaffold8_size264826, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 141656 31 100.0 34 ............................... TCAAGGCAGCCGATGTGATTGACGCGGCAATCGA 141591 31 100.0 33 ............................... TTTGCGTTGCGCAAAACTCCATGATACCATCCG 141527 31 100.0 34 ............................... GCCTCCACAGAAGCGGCCCACTTCTTGGCGAGTT 141462 31 100.0 34 ............................... TGAGCCTCCGCACTACGGGCGGCAAACTCACTCA 141397 31 100.0 33 ............................... TTCACTCATAATCAATTAACCTGAATCAAACTG 141333 31 100.0 34 ............................... CTGATGGACGCCGTGTTTCCGGGGTGATGAACAA 141268 31 100.0 33 ............................... AAGCAATCACACTTTTCGCACACATGCAATAAA 141204 31 100.0 35 ............................... TCTGTACCTCATACCCGCGATAAGAATGAGACTGA 141138 31 100.0 34 ............................... CTACCTCTCTAACCTCTCCTTTTATTGAAGAGAA 141073 31 100.0 34 ............................... CTCTCTCATTTCCTCTCTCATTTTTGCCCCTGAT 141008 31 100.0 34 ............................... AGGGCCGCCTCCGCGCCATCAGCAAAAGCTCCGG 140943 31 100.0 34 ............................... ATCTCCGACCAAGTCCGGTCCTTGATAGGTGCCT 140878 31 100.0 34 ............................... AGCTTCCCGTACTCCCGGCTCAACTGCCGCTGCA 140813 31 100.0 3 ............................... TCC Deletion [140780] 140779 31 64.5 35 .ATTGGGGAAG.C.................. CGCGGGGAGGTTGGCAAATTCGGCGTCGGTCATAA 140713 31 96.8 34 ............C.................. TATGCTTGCTATCTTTCCCCCTAATTCCCTGTAA 140648 31 96.8 33 ............C.................. ACGCGCCAGCTGCACAACAATCAGGGCGGCCGG 140584 31 96.8 35 ............C.................. GGTCAATGGAGTTGAGGGTACCCGTGATGGTTTCC 140518 31 96.8 34 ............C.................. TATGTCAGGGCGCCACGTTTGATATTGCTACTAC 140453 31 87.1 0 ............C.A...T........C... | ========== ====== ====== ====== =============================== =================================== ================== 20 31 96.9 32 GTCGCACCCTCATGGGTGCGTGGATTGAAAC # Left flank : NNNNNNNCCGCCCTTAAGGGCGGCCCCGTTTCATGTTGGCGGAAAAGAAACTAACAAATGGGCGGGAATGAAAATGGAGGCCGGAAAAAAAGCGGAACTCACCCTTGAAAACTCTGTGGACAAATGCCGGGACTGTCCTGGAAAAATGAACCGGGAATACGGATGAAAGACAAGCCGGGAATGACGGTGGTGTTCGAAGAAGCTTCTGGACGTTCCCCCAGGGAATGGCTAGCATGTCGGCATACCACCTGACTGTGCACAAAGCGGTCATGGCAGGAACATGAAACAATTCGTGCATGTCCTTTCTGCTGCGGCCCCCTTGCGCCAACCCCAAGCTCACAGAAAATCGCCGGGAAACTGGCGCACTCTGTACGTCATTGAGGCTTGAAGATTGACAAACGAACCACTCATCATTACGACCTGCAAAGCGCAGGATGATTGAACAGGTTGGCGCAAAACGCCATTTGGACCTCTGACCTTCAATCCCTGCGCTTCAGGCC # Right flank : GCGGGGACGCTGTTATATGTTGCATACTTGCAGTTTGTGATGGACAGGAAGGAGGAAAAAGAGTGATATGAGTACGGTATGCAAAAGGATTGGTTGAAAGATCTTTTGGAGTGGAGTCCCCTCTTTCTGGTACTTCTGGCAGGGGGAGCGCTGTGGCTGTATTCCAAGTGGCAGCTCAGGAAGGTGGACAGATCGTTGAAGGAGTTATGGGGGAGCATTATCCGGAAGGCGGAGTCGGGCGATGCGTATTCCCAGTTTCAGGCGGGACGCATGTATCAGAAGGGAAATGGCGTTTCCAGAGATGCCGTATTGGCGGATGAGTGGTTTCACAAGGCGCTTCCCGGATTGAATCGGGAGGCCAATGCCGGAGACAGGGACGCCGCCTTTTGCCTGTACGAGTGTTTCAGAGAAGGACTGGCTGTACAGAAAGATGATGCCAAGGCTCTGCTCTGGCTTCAGCGCGCCGCGGAGCAGGAGGAGCCGGAGGCCATGTTTGCGCT # Questionable array : NO Score: 8.97 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCATGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 27112-26609 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVMA01000015.1 Akkermansia sp. BIOML-A39 scaffold15_size99703, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 27111 33 100.0 33 ................................. CAGAGAAGTTTAAGAATCTCGGAGAGATAGGCG 27045 33 100.0 34 ................................. GCCTACTACAACCAGCTTAATGGCGAATACATGT 26978 33 100.0 34 ................................. CTGATGGTACGGCCAATCCATCTTTGGTAGGCGA 26911 33 100.0 34 ................................. TTGATATTGTACCGGTATCCCGGCATCATGGACA 26844 33 100.0 35 ................................. TGTGCTGGGGTCGATGATCCATTTTTGGCTGTCGG 26776 33 100.0 35 ................................. GTCCAATGCGACCAGATTTTCGACCACGTCCACTA 26708 33 100.0 34 ................................. CACCAGTAATCAAAAATCTTGATGTCCCATGACT 26641 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 8 33 100.0 34 GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Left flank : GCTGCCCACAAAATCCCGGGTCAAGACCCTCCAGTACCGTTCCGGCATCACGGCCTACTACATCCTGACCATCCATCCGGACTCCATGACGCTGGACACCTACGCCGCCCCCAACAACGGCACCACGGACAAGGGTCCGCAAAGCGACGAATTCAAGAAACTCCCTTCCTACCGGATCCCGATGGATTAAAGGAAAGAACATTCCTTCCCTGTTCACCGGAAAGGAAACTGGACGCGCTTGAGCTTTCCGGATAAACTCCCTTCCACCTTGGAATGCCAGGGCAGAAAGAAGGAACATGCCCGCCTCCCTTCTGCCGGACAGCGCCAACCTCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTGCTACAAGTTATTGAGGACTGCATATTGACATCATGGAAACAATAAACGGCGGGTTGGAAATATCCCTCTGATAAACAGGTTGGCGCAAAACATCCTCTGCCCACCTGAACATCAGCCGGATACCTCCCCTGCC # Right flank : CGGGCTGACGCATGACCGGAGCAACAAGGCTTTTGTCGCACCTCACATGAGGTGCGACTAAACCGTTTGGGCAAGCGTTGGAATATCCATCAGAGCGGACAGCAGAAAGAAGAAAACCGCATTTCCCTGACGTGATTATGTTCGCGATGATTTCTGCACAAAGATTCCGTCCAAGTATTCCGCCTTGCTATCCAGTCCATTCAACCGTTTGTTTCCTCATGGCCGAATTCCGGCTGAAGGTTTTGTTCTTCCACGGCCTACCTGTTTCCCGCCAAAAAGCAATCACCGTTTCCATAAAGTCTTTTTTCCTGCCGGATGTAAATCCGCTTTTCCTTGCCTCTCCACCAGCCTCTCAATTTGACTTTTTCCGCATCCGCGCTTCCCCCAACGGGATATTTTCCATTCAGCTTCCGTATTTCATTTTTTCTTTTCCTCCCAGTTTCAGGCCGTTTCCATCCGGGCGGCCCGCACATTTCCACGCTCCACAACCCGTACCTTGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 65411-64666 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVMA01000016.1 Akkermansia sp. BIOML-A39 scaffold16_size90015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 65410 31 100.0 34 ............................... GCCAACCTCTTCTATCAAAGCCAAACCCCGGTAA 65345 31 100.0 35 ............................... AGGATTTGGAACTTACCGTTTCACCGTGGGCCGAA 65279 31 100.0 34 ............................... TATGAGTGCGAAAAGTGCCACTCGATCACCGCAA 65214 31 100.0 33 ............................... CCGGCTGACGTTGCGGCGATGCGAGAGGCACCC 65150 31 100.0 34 ............................... TACAGTCCGCAAGTTGTTCTTCAGGCGCGTTACA 65085 31 100.0 34 ............................... CCGGCGAGGATCACCTGGTGGAATTCGTATTGGA 65020 31 100.0 35 ............................... CAATTTCTCCAATCAGGCCGCGGCATCCGTGCAGC 64954 31 100.0 34 ............................... TTTCCGCATCCCATTCGATTTTAACGTGTTATAA 64889 31 100.0 32 ............................... TCCGGGTTGGCGTTGTAGGTGTCGTCTATCAC 64826 31 100.0 35 ............................... TACCTGTCCCGCACTTTTTGGATTAACACGGCCGT 64760 31 100.0 34 ............................... ATTTTATGCTCATCCGTCCATCCCCTGCGCCTCA 64695 30 77.4 0 ...................A..-..CAT.TG | ========== ====== ====== ====== =============================== =================================== ================== 12 31 98.1 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : TGATGGCCTGCCTGGCGTCCGCCGTTTCGCTCTTCCTTGTCTGGCTGCTGAACCTCAACAGGTGGACGCGCAAGAGCATCATGTAAAAGATCCGGATATTTGTTTGCACGGACGCTGCGGAACGAGTGAAACTGTTCCGCAGCGTTTTTTGTTCGGAAAGGCTTTTTTCTGTGGTGGACAGCAAAGGCTGCGGTGTGGTTTGAGGAAAGTTGCTGGACGAATCGTCGTGGTCATTTTATTATAAATACGCATCACGTGCAGGCACCGGTTATCCGGATGAGGCATCTCTTTTGAAGAGAAGAGCCGGCATCCGTGGTTCCCGGGCCAACCCCAAGCACACAGAAAATTCCCGGAAAGTCGGCGCTTTTTGTAACCTGTTGGGGATGTTAGATTGACAGTAATGATCATTTTTTAAGGCGTGGGTGCTTGCAGATTGGTATGGCAGGTTGGCGCAAATCATTATTTGTGCAATTAATGATCAATTTGTAAGCTCCCCCGCC # Right flank : GATTGTTCATAATTCGAGCAGAATGCTTTTTCATATACACTGTAGAATGCAGGAGCAACGGTTATGCTTCAACATTTCACGATGCTAAAAAGCCGCCAGATTTTTTCTGGCGGCTTTTTTGTGTCGGTTAAGACAGGTGGGACAGGCCCGGATGATCTAAGGCCGGTTAGTCTTCCATGTTATCCCCTTATGGATCATGATTTCCCGTCAGCCATTCCACAGGTATTCCTGATATTTTTATCAGGCTTCCTGCCTTCGGCAGCTGTTTGTATGAGATAGTTTGCCCTGTGAAGACAAGGGGTTATCCCGTTATTGCTTCCATCTTTTGAGGTGCGGGAAGAATTGCTTCATGCCGGACCGGGCTTCTTCCACGGTATATTTCTTTTCCGAGTCCTTGTTGAATTCATCAAGGTATTCCAGGTTGTGCTCGATCATTTCATCCATGGTGCAGTCCCGGGTGAAACGGCCCTCTGCATAGCAGTAGTGGCAGTAGTCCTCGT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 77832-77344 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVMA01000017.1 Akkermansia sp. BIOML-A39 scaffold17_size88785, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 77831 31 100.0 35 ............................... CCCCTCAAATAACACTCCTCATGCAACCTACGCTG 77765 31 100.0 34 ............................... CCAAACTTGTCCCTGTCCACCATGAAATCCCCTA 77700 31 100.0 34 ............................... CTGCCGCCTTTGACTACATGGACGGCGTGGGCGT 77635 31 100.0 33 ............................... AATGGCTATCAGGAGGCAGCTCCGGAACACCCA 77571 31 100.0 35 ............................... CCCGCGACCTTGCCGAGGGGGAAACCTCCCCAGTG 77505 31 100.0 34 ............................... GATTTCACAGAAGAGGACAGAGCGGAAGCCAGAA 77440 31 100.0 34 ............................... AGCAAAATCTGGAAAACGGAACATCCAGCCTTTT 77375 31 83.9 0 ....................GC...G...GT | T [77351] ========== ====== ====== ====== =============================== =================================== ================== 8 31 98.0 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCGCCTTTTTCCATTTCACAGGCTTTCCGCTCCAAGAGCGGAAAGCCTTTTTTATGCCGGAATACCGCCATATACGGTAGTGATCCGTACCCAACGAGTTGTAAATTGCCCGGAAAACGGATGCGGCAGTACGCCACGTAATAATGGGAAGAGACGTTTTCCGGCACCTCCTTTCCAACCCGTCTCCATGGTGCAGGTGGGAAAGTTTCTGGACGAAATGCGCGGGACGGACTACTATTACTCCTGCATCGCGGCAGGCACGGGCCGTCAGGTGGCCGGAACGACTCCTTGGCGGGATCTTTTTCTGCCCTTCGCACTCCCCGCGCCAACCCCCAGCTCACAGGAAAATCCCAGAACACCGGCGATTCCTGTAACTCGCAGGGTATCTTAGATTGACATCCCCCATATACTATTTCAGGCGTGGAATATGCATCTCCGCGGGCAGGTTGGCGCAAAATATCCTTTTCGTGCCTGACCCTTAACATATATATTCCCCCGCC # Right flank : TTATCAGGAGCAGATGGTCCGATGCGTTCTTCTGATGATTCCTTTTGCCTGAAAGGCTTTTCGATGACGTTCAGACCATGAAAAAGCGCCGGACCCCGGGAAGGGGGCCGACGCTTGCGGTATAGGAGGGGGGAATTAATGGGAGCAGCTGGCGCAGGCCCAGCCTTCGCGGATTTTGGCAAAGAAGTCGTTGCCTTTGTCGTCCACCAGGATGAAAGCGGGGAAGTCTTCCACTTCAATTTTCCAGATGGCTTCCATGCCCAGTTCCGGGTATTCCAGCAGTTCTACCTTTTTGATGTTGTTCTTGGCAAGAATAGCGGCGGGGCCGCCGATGGAACCCAGGTAGAAGCCGCCGTGCTTGTGGCAGGCGTCCGTCACCTGTTGGCTGCGGTTGCCCTTGGCGATCATGATCATGGAGCCGCCGTTTTCCTGGAACAGGTCCACATAGGAATCCATGCGTCCCGCGGTGGTAGGCCCGAAGGAGCCGGAGGGATAGCCTT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //