Array 1 7744-10282 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHPX01000037.1 Bifidobacterium longum subsp. longum strain MCC10015 contig0037, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 7744 36 100.0 28 .................................... GCGTCGATTTCCTGCTTGGTCGTTCTGA 7808 36 100.0 28 .................................... TCACCAAGTACGATTCGCACAACTACAC 7872 36 100.0 28 .................................... TTTCGGGCGTCCACCCGTCGCCCATATC 7936 36 100.0 28 .................................... GCTCACGTTGTCGCATTGCATGGGACTC 8000 36 100.0 28 .................................... AAGCCGATTGAGCCGATGCTGAAGTGGT 8064 36 100.0 29 .................................... TGGACGTGCAGGTAATGGTTGACCGAATT 8129 36 100.0 28 .................................... ATGTTCGGCCAACCCGTGCGCGTCGAAC 8193 36 100.0 28 .................................... CGGCAACAGCGCGTGTATTGCGTGTCAT 8257 36 100.0 28 .................................... CCTTTTTCAACGTGGCGGCAAACGATAT 8321 36 100.0 28 .................................... GATTACGGCCATTTTTATTATCATGGAC 8385 36 100.0 28 .................................... ACGAGCGCTACCGGACACTGGACATGGA 8449 36 100.0 28 .................................... GCTACTGCCGCCTGTAGTTCGCCCTCGA 8513 36 100.0 28 .................................... TCCATTGACGCATTGTACTGGTCAAGTA 8577 36 100.0 28 .................................... TATTCGTTGCCGATGATGTTGCGGAGCT 8641 36 100.0 28 .................................... CGTGCCTATGCGTTGTTTGCCGCCTTCC 8705 36 100.0 28 .................................... CTGAGATGCGCGCTGGAACACGCTCAGT 8769 36 100.0 28 .................................... AATGCGCTGAAATACGGGTTGGCCAACG 8833 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 8898 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 8962 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 9026 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 9090 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 9154 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 9218 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 9282 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 9346 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 9410 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 9475 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 9539 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 9603 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 9668 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 9732 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 9796 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 9860 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 9925 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 9990 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 10054 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 10119 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 10183 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 10247 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 40 36 99.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : TGCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 65369-64304 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHPX01000002.1 Bifidobacterium longum subsp. longum strain MCC10015 contig0002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 65368 28 100.0 33 ............................ ATATTCCGGGATTGTGGTTACTGCTGCTGGACG 65307 28 100.0 33 ............................ TCTGCCGGACGATCCGGCCCTCGCGCCGAATGA 65246 28 100.0 34 ............................ GATAGGGGGCATCCGTCACGCCTCGGGCTCCGCG 65184 28 100.0 33 ............................ TTGGCTACGGGCGCGATCGCTCTGGTCGCCCCG 65123 28 100.0 33 ............................ CGGTTAACGGTCGTGACTGACTTTGGCGATACT 65062 28 100.0 33 ............................ GTGATGGGTGCCATGCTCTTCACGCAATGGTCA 65001 28 100.0 33 ............................ TGAAGATCATCACCCAGCCGCTGCGCGAACTGA 64940 28 100.0 33 ............................ GAGGTGCAGTAAACACGGCAAGGCTGACGTTGC 64879 28 100.0 33 ............................ AATGATGTACGACGATCAGGGACACGTGACCAC 64818 28 100.0 33 ............................ CCTGGGATTCACCATCGTCGCCGACGGCGTGGA 64757 28 96.4 33 ..............T............. ATAGACTCACACCACATCACGAGCAGGAATACG 64696 28 100.0 33 ............................ TTGCGTCATTGATTTCCTGTATTTGAGGGAATC 64635 28 100.0 33 ............................ TTGGCAACATTTCGTGTACCACGTCGGCGTGGG 64574 28 100.0 32 ............................ GAAAGGCCCCGCTATATCCAGGCGACGCCGCG 64514 28 100.0 33 ............................ GTAGTGAACTCCGATTCCACCGATGACAGCATG 64453 28 100.0 34 ............................ GTTGGTCAATGGGCATCAGGTTTATCGTGTCCCC 64391 28 92.9 33 ..........T..G.............. TAAGACCCTGTACCAGTTCACGATTGATGCCGA 64330 27 71.4 0 ........-..G..T........GGTTT | ========== ====== ====== ====== ============================ ================================== ================== 18 28 97.8 33 ATCTACCCCGCACACGCGGGGATAAACC # Left flank : CGCATGCGTGACATGATGCAGGACGGCAGACTGCTGGAACGTTGCGTACATGATGTTTCCACCCTCCTCTCGGAGGAGCCCGATAACGAGGACACTTGTTCCGTCTGGACTGGCGGGCAACGATACGGGAAAGCCGGCCGATCATGGGCACCGTCGTGATACGACTCGAAAGCGCTCCACAAGGACTGCGCGGACACCTATCCCTATGGATGGTGGAAATCAGCAGCGGCGTATACGTCGGAGACCTCAACACCCGGATTCGTACGCGACTCTGGCAACGAATCCTCTCGGAACTCGGCACGGGCAGAGCGACGATGGCATGGCATTCCCAGCATCAGCTACATGTCAGCAGCCAAAACGGAAAGAAGACGATAACCGCTTTCGACGGAACCATCCTAATGTCCAGACCGCCTAAAGCCAAGGACAATACGCCCTGAAAACAGGTACGCAATTTGCATAAACGGCCCTCGCATGGCATTGAAAACGTTGAAAACTAAACT # Right flank : ATTATATGTTTTTCCCATTTACCTGTTATACTGAATACGTTCACATAGAAATGAAAGAGGAAAAACAATGAGCCCTTCGGAAGCCAGTGCCACGAAAATCCCTGCCACCTCCATAGACCGGCACTAATTGAAGTGGGGGGTAAAAATGAATCATCCAGATCAACTCAGCCGTGAATATGCGGCGATCCTTCCCGCCTTGAAAGACCACGGCTATCGAGCCGACGTGAAAGCAAGCATCGCCGACGAACGTTTCATCTTGGTCGTCAGCGGCAAACCCACCACAAGAATCTACCGGGACGGAGGATGGGTTCGCGACGATGGTGCGAGAGGATCCACTCCAGCCGACCTACTCAGCTTCTACCAGCATGAGCATTACACGGAAGCCCTGAAACATTGGAAGAACAAGGATTGGCGTGGAATCGCCCGTGACCTGCTGATCGACAACGGTGTCCGCATGGGGGCGGTCCTGGCCGCCGTTTTCGAGGGTGCTCATTTGGACG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACACGCGGGGATAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA //