Array 1 118874-116584 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070247.1 Streptomyces californicus strain FDAARGOS_1212 plasmid unnamed3 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================= ================== 118873 33 93.9 28 ..............................GA. ATGGGAACGTAATCGCATGTCTGAGGAG 118812 33 97.0 27 ................................A GCAGCTCAAGACCGTGGGGCCCGCCAT A [118783] 118751 33 93.9 28 ..............................A.A ACGGCGCCGGACCGCTGACACGGCCCGA 118690 33 93.9 28 .............................TC.. TGAGCTGGCGGCCGTGGATGATGCAGGC 118629 33 100.0 28 ................................. CCAGCATCCCGGGCCGGGCCCTGATCAA 118568 33 93.9 28 .............................G..C GGAGGACGGGCACGACTGCGGTCTGGAC 118507 33 100.0 28 ................................. CCAGCATGGTCGACCTCACCGCGCGGGA 118446 33 100.0 25 ................................. ACTCCCAGCAGGACGCCATCGAGAA GGG [118416] 118385 33 87.9 28 .............................GAAC ACCTGATCGTCCACTCCGCGCACGAGTT 118324 33 87.9 28 .............................TGGA CGCCGTACAAGGTGACCCGCTCGACCCC 118263 33 93.9 28 .............................TC.. AGGCCCAGACCTCTGCCAGTCTCAGACT 118202 33 93.9 28 ..............................G.A CCTACGGGCTCGGCTACGTCGGCTCCCC 118141 33 97.0 28 ..............................G.. ACCGGGCTCGTGAACTGCAACGGAGGTC 118080 33 90.9 28 ..............................CTC TCCAAGGCATCCTGCGGGCCCTTCCGCG 118019 33 90.9 28 .............................GC.A TGGCCTTCATCTACTAGTCCACCGCACG 117958 33 90.9 28 .............................AG.A GGCCGTGCGGTTCGCCGTCGAGACCGGC 117897 33 90.9 28 .............................GC.C CCGTGGACTTCGTCGGGTACGCGCAGAT 117836 33 100.0 28 ................................. CCAGCGTGGTCGACCTCACCGCACGGGC 117775 33 87.9 28 .............................GCGA TCTGGCGGAGGTGAGCGCCGGACGTTCC 117714 33 87.9 28 .............................TAGA AGTGGCGGGGCTGGGCGCCGTTCACGGA 117653 33 93.9 28 ..............................CG. GCGCGTACCAGCGGCTCATCACCGGGGC 117592 33 90.9 28 ..............................AGA TCGCCGCGGTTGACGGGTTCTCCATCGA 117531 33 93.9 28 ..............................C.T TCGGCATGCTCATCGGCTTGAGGTCGGG 117470 33 90.9 28 ...........T.................AC.. CCATGATCCGTTCCAAGACCTTGTCGTC 117409 33 93.9 27 .............................GC.. CACGACTTCCGTCCAGCCCTCTCCGGC 117349 33 90.9 28 ..............................AGC GTGCACCGTCGGGCGGCTGCTCGATGGC 117288 33 93.9 27 ..............................AT. GCGCGATGCCGGATACGGGCTCAAGAC G [117260] 117227 33 90.9 28 .............................TA.A CCGGTAAGTACAGCGGTCTCGGCCGCAT 117166 33 87.9 28 .............................GCGT ACGGGCTGTGCGCCGACGACTGGCCGAC 117105 33 87.9 28 .............................GCAT CCGCGCCTACGCCTGGCGGGCCGCCCTC 117044 33 93.9 28 .............................GC.. ACGGCTTCGTCCCGATCTCCTACGAGGC 116983 33 87.9 28 ...............A.............TGG. CGGCGTAGGGGCGGGTCGCGACGTACGG 116922 33 90.9 28 ..............................GAT CCAGTCCAGTAACTATTCCCCGGGGTCG 116861 33 93.9 29 ..............................G.C CAGGAGGCGACCCCCGGCCGGGACCAGGT 116799 33 87.9 28 .C...........................TGT. GGGAGAGACCGCCAATGCCGAAGTCGTC 116738 33 93.9 23 ......T.......................C.. GCATCATCGTCACGACCGGCTAC CCGGA [116705] 116677 33 90.9 28 ..............................AGC TCAAGGCCAATAGCAAGGCCACCCGGGT 116616 33 81.8 0 ..............G..A...........ACGT | ========== ====== ====== ====== ================================= ============================= ================== 38 33 92.3 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCTCG # Left flank : CCCACGCATCGTCCGGGACGTCCAGAGCCTCCTGACACCACGCTCCACAGATGTCACCGACGAGGACGAACCACAGGAGAAGCGCGACATCCACCTGGTCCACCTCTGGGATCCCAAGGCGGGCGCCCTTCCCGCCGGCGTCAACTACGCGGCCCGAGGTGAATGATGCCGTCCCTGCTCGTGATCGCCACCACGGCCGTTCCTGACCACCTCCGCGGAGCACTCAGCCGCTGGACCAGCGAGGTCGTCCCCGGCATCTTCGTCGGCAGCGTCTCCGCCCGCGTCCGCGAACAACTCTGGCAGGCCGTTACCGAGACCGTGGAGAACGGAGCCGCCGTCCTCGTCCACCCCGCCCCCACCGAACAGGGCTACGCGGTCCGAACCGCTGGCACCCGCCGCCGCGTCCCCGCCGATTTCGACGGACTTACCCTGATCCGTATGACCGCCACACCGAAGGTAAAGGAAGTGCAAAGCCCTTCTTAAGGTGCAGGTCAGGAAGT # Right flank : ACGCACCGCCCTCCAGGACGACCTCCGGATTCGCCCCGCCGACGCTGTCGTACAGGGCTGGCGCAGAGATCGGACCGGCAGCAGGAGGGGGTGTGCGTCAGCTCGTCGAGGGGTTGACGGTGAGGGCGGCCGTGCTGTTCGTCAGGTCGGGGTCGAAGGTGCGGACAGGGGGTTCGTAGGCGTCGTTGTAGAGGACGGCGCGGCCGGTAGCGTTCGGGATGACCTCGTCGATATGGAGGGTTGAGGGGAAGGCGTGGGCGGCGAGCTTGCCGGATTCGGTGAGGTAGATGGGGGTGTTGCAGCGGTAGCGGGTCTCGGACTGAGACCAGCAGCTGTCGGGGACGGGAGCGACCGACGTGCCGACGGGGACGTCGATGTCGATGGTCGCGGCGGGTTCGCCCGCGCTGAGGGAGGCGACCCAGGCGGGCCCGCGTTGTGGACGGGGACGGTGTCGCCGGCCGCGCCGGAGACAGTGGAGGCGGTCAGCCGGTAGTCGGCCT # Questionable array : NO Score: 4.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.14, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 128755-129823 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070247.1 Streptomyces californicus strain FDAARGOS_1212 plasmid unnamed3 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 128755 33 87.9 28 .................A............CCT TCTTGCTCAAGGGCGTCACCGAGGAGGC 128816 33 93.9 28 .............................G.C. CCACCATGAGCGACACCGAGGCCCAGCT 128877 33 97.0 28 ..............................G.. CCGTCATCATCCGAGTAGACCGTGCGGA 128938 33 100.0 28 ................................. GGACACCGCCGAGCTGCTCGCGGACGTC 128999 33 100.0 28 ................................. GGACACCGCCGAGCTGCTCGCGGACGTC 129060 33 97.0 23 ..............................G.. TCCTGGCAGCGCGTCATCGCCGC CGGCC [129087] 129121 33 90.9 28 ..............................GCT ACGTCGCCAAGCTCGGCCCCGGCGACTG 129182 33 90.9 28 .............................GT.T TCGACGGGCTCGACAAGCAGCTGCGGTC 129243 33 90.9 27 ..............................CCG CCAGCCACCACATCACGACGTGCCGCC 129303 33 87.9 28 .............G...............TC.C TGACGGGCGGGAAGCTGCCGCAGGGCAA 129364 33 90.9 28 .............................ATC. AGAGCCCGTCCCGGGTCATGGCGACGAT 129425 33 84.8 28 ...........A.................GGAG CCGACCAGTGAGCACGACGATCTTCAAG 129486 33 87.9 28 .............................ACCT TTGGGGGGACTGCTTCAGGCCCGGAGCC 129547 33 90.9 28 .............................ATC. GGTGGCAGATCGGGCAGGTGTTCACGCG 129608 33 90.9 28 ..............................GCG GCTGCCCCAGTTTCCGGGGCTTCGACAT 129669 33 90.9 28 .....T........................C.G AGAGCCCGCGCAAGGGCCGATCCAAGCA 129730 33 97.0 28 ..............................C.. TCTAGGCGGGCTGCACCTGTGACCACCG 129791 33 93.9 0 .............................G..G | ========== ====== ====== ====== ================================= ============================ ================== 18 33 92.4 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCAGA # Left flank : GCAGGCCAGCACACAGGCCAACGAGCGCCCGAGCGCGATCCCGCTCCCCGGCCAAACCCATTCCTCTAGCTATACACAACCTCTGGTTCTCCGACAGGTACACATCCCACAAGTGAAGCGCCATCGCAGCCGCGTCAAGAAGGTGCCTTACCAGCGGGTAGGGAGGCAACGCCGGATCCAACCCACGGAACTTCCCCCACGCCGATTCATCCACCACGCTCTGTCTCTGCACCACGCCAGCCCTCCCTGATCCGCCACTCGCCACGCTCCCGCGACCTAAGCCAACCTGCCACCGATCGCATACAAGCACCGGCACTGACAGTGATACCGCTACTCGCAGTCCGACGGCCGCCAATCGGTCAATGACGGGCGTCGTGCTCGCCTCGACTACCTTGCAAGCTGCGCCTGGATACAGTGACGGCGTGCAACTGACTGAGCGCCTCACCCACTCAAGAATGGCAAAGGAAGTGCAAAGCCACTCTTAAGGTGCAGGTCAGGAA # Right flank : GCACCGATGAACCCGGAGCAGCGCTCCAAGTCCGGGCGCGACCGCCGAGGTGATGCTGGTCAGCCTGTCCCGTTCGCCTGAGAGGCGTTGCAAGGCTCCTCCGGGAGTGTCATGTCGAGGCCAGGTCGGTTGCTGGGCGGCCATCTTGACGCATAGCTCCTTTAGGGCTTGGCGGCCGTCGGCGAAGTGCTCCTCAGGTTCCCGAATCGTTCGCGGAGTTGCCGGTCGGCGGCGGCCTGGATCTCGGGGCGGGTGTGCTGCTGCCTGGTCCAGGTGGCGCGGTGGGCGGCGATGGCCTCGCGGTAGCCCTTTGACGGGTCCGGCCGCGGTACCGGCGCGGCGGGCGCGGTCGGTGGGGATGTCGGTTCGGCGGCCGCCGTGGAGGGGCCGGCCTTTGCGGGTACGGGCGCCAGGACGTGCAGGGCGCGGACGTTCGCGCCGGGCGTCTTCTCGTTGGCCGCTGCGATCAGTTTCGGGGCGCTCCAGCGCAGCTTCGTGCC # Questionable array : NO Score: 5.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:-0.03, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3189409-3189745 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070245.1 Streptomyces californicus strain FDAARGOS_1212 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3189409 29 96.6 32 .........A................... GGCTACCAGGCCTGGCCGAAGTACACGAAGTA 3189470 29 89.7 32 .C......................AC... CAGCCAGGGAACGCGTACCTCAGCGCGAGCGG 3189531 29 96.6 32 ............................T CCTCGGCTGCCTCCTCCGCGCCGTGTTCCTCC 3189592 29 100.0 32 ............................. CCGGCTGGGTCGACGTGAACGTTCCCGGGTGG GGG [3189614] 3189656 29 100.0 32 ............................. CCATCGGCGGCCGCCCTGCGGAATGGGTCAAG 3189717 29 89.7 0 .............A..........CC... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 95.4 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GGCATGCGTGATGGCTCCTGTGACGGACACGGGGACGGCCGACGACCGGGGAGGGAAGAGCCCTGCGCGAGCGAGCGCCGGGCGGTGGCCGCGCGATGACCGCGAGTCCCCCGGCTGCCGGGTGGCCGAAGTTGACGCGTCGAAGTCTCGCCGCGCACCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCACGCCCTGCCCGAAAGTGCCACACCCCGCCGACCGACACCCCTCGGAAGTGCTACCGCCGGGCATCCTTCTTCCGACCGATCGCGGCGGCTGGGGGCGGGGGCCGGGAGGGGCTGCCGGCAACAGTCCGGGGCACGACCGAAGTACGGGACAGGGCGCTGGGTGAACTGGCAGGCTGGGAAGCAGATCCCGGGGGTGCTGACCTCGGCCTACCTGGCAGCCCATTCGAAACTTGAGGCCACATATGCCCGACTCTCAAGAAGTTCCCCAAAACGACCCCTCGGCCGGATAGACCCGCAGGCCACGAAGG # Right flank : CCGGGCCACCCTGGCCGGGCTACGCCGCCCAGTGCTCGCCGCGCGCGGGGACGGCCCCTTCTCCGGCGGGATGAGCCGGGGGCGCAGGGTGCGCCCTGCGGGCCGGAATCACCTGGGCCGTGGCACCCCCGCCTCAGCCCAACCGGAGTGTCGGGCTGAGGCGCGTGCTGCGGTCAGTGGCCGCATATGTTGCAGGGGTAGGCGGTCTGGCTGATGCAGTTGCCGTGATCGTCGTAGATGTAGATCACGGACCTCTGTCCAGGACAGCCGGGGGTGCTAGTGCACCCGATGGCCTGGTCTTCTTGGTGCCCCATGGTGATACCTCGCCTTCTGCTCGGAGGTGGGTTCCCACGTCCTCCGGCAACCAGCGCAGAACCAGAACCACCGAAGCGGGCGGCTCGGTGCAGTGCGGCTGGTGTCTCGCCAGAGCGCCCGGCCGTCCGGGCAGTGGGGGCAGAGCGGCGGCTGGTCCACGGCGTCCTCCTGGAGCAGTTTCGAGT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3192822-3193398 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070245.1 Streptomyces californicus strain FDAARGOS_1212 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3192822 29 96.6 32 .......G..................... GTGCCGATGGGGTCGAAGGGGCTGTGCATGAA 3192883 29 100.0 32 ............................. GGAGTCCTCCGCCTCTACCGGCACATCACCAC 3192944 29 100.0 32 ............................. CGTTCGACCGCCATCGGCCGCTCGATCTTCAC 3193005 29 100.0 32 ............................. AGGCCGACCAGCGGGCGGGTCTCCAGCGCGAG 3193066 29 100.0 32 ............................. CAGACGGCGTTGATGCGCCCGTCGAAGTAGTA 3193127 29 96.6 32 ...........C................. TCCAGCCCGGAGAACGTCTCGGGCATCCCCTT 3193188 29 100.0 32 ............................. GTGCGGGCCATGCTCATGGGGCGGATTCCGGT 3193249 29 96.6 31 ....................A........ CAGCCAGCCCACGATGCCTATCTCCGGTGGG 3193309 29 96.6 32 .......T..................... CCGTACAGGATCGTCTCGCGCCGACAGTGGTA 3193370 29 82.8 0 ............T.A.......C.CC... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.9 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CGCATCACCCAGCCCAGCGAGATCGCCTTGTACACGAAAGCGTTCGAGGAACTGCGACAGGCTGCGGTGTACGGCGCAGAAGCACGCGCCCTGATCGTGAAAGCCATCGACGCCCTCGGCTGGCCCGAGCACCGTGCAGGGCGATGAAGTTACGAAGCTACGGTTACGTCCCCGAGGGAGTGGGGGTAGCCCCAACTCGGGCCGATTGATCTGGTCGTGGCGACGGCGCGTCATGCGCATACAGAGCTGTCGCGTCGATGCACTCCCCCTCAGCGCCAACGAGATCGTCACCGCCCCCGCAAGGCTCCGACCTACGATCCGGTCGCGGCTGCACCTCCTCGCAGAAACCGCGAGAAGCCCTCCCCTGCAATGAGGGACGTGCAGAATGACTTCTGTCGAGCATCAAACAGGTCGATTCACCCCGAAGGTCCTGCATGACCGTTTCTCAAGAAGTTAGCAAAAACGAGCCTACCGCCGCCTAAACCCGCAGGTCACGAACA # Right flank : CTCCACACCCCCACCCGGCTCCACCCAGCCGGCCAGCCGGGCGCCCCTCCCCAGTCGCGATACGTACCCCCACAGCCCCCGTCCACCCGACAACACCGCAGGTGGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCTCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCATGCTGTGGCCGGCCGACGAACCGTGGCCGGTCTGCACCGAGCCGCACAAGCGCAGCAGCGGGTACCGCATCGCGGACGTACGACGTGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAGCGGGACCTGCTCAAGGAGCTGGGCCGCAGGCACCGGCAGCGCGAGATCGCCGACACCGATCCGATCCCGCTGGTCGGCCTGGCCCAGTTGTATCG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3197801-3198134 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070245.1 Streptomyces californicus strain FDAARGOS_1212 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3197801 30 96.7 31 .............................C GTGATGGGCATGGCGCGAGGGATGGCGCCGA 3197862 30 100.0 31 .............................. AGACGCCTGGGGACACCCTGAGCGAGCACGT 3197923 30 96.7 31 .........A.................... TCGCGGTGGGCCTGGTCCTCCTCCTCCAGGG 3197984 30 100.0 31 .............................. CAGCCGCGCTCGTGAACTGGCGGATCACCAC 3198045 30 96.7 31 .............................C TCGACGGCGAGTCCCTGGCGCTGCGCCTCTA 3198106 29 96.7 0 .........................-.... | ========== ====== ====== ====== ============================== =============================== ================== 6 30 97.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : AAATCCCACCCCACATCCCCAGGGCGACAGAAGACCGATCGCCGGACACCAAGGAACCAACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCCCCGCAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCACCGGAAGCAACGACACCACCGCACCCACCACAGAAGAAATCGCCACCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAACCCGCCTGACCCCCATTCGACAGCCCGCCGCTGGGCTGGGCTGGCACACCACACCCCCGGGGGGGGCAACCCCTCGGAAGGCAGAACCGCGCCCCTTCCACCGAAGCCCGGACGATGAGAACAGCGGTGGGCAGAATGGCATCAGCCGAACCACACACGCGACCCCTTTGTGAAGGAAGACGAGATATGCCGGTTTCTCAACAACACAGTAAAAACCGCCTCCCCGTCACCTAAACCCGCAGGTCACGAACA # Right flank : ACGCACCATCGCTTACGTGAGATCACGGCCTCGAAGCCTGGAAGGGCGGAACCTACGGCCCCTGCTCCGGCGGGTTCCGTGACCATCCGAGCCCCTGCCCGCCGGCCCCGATCCGGCGCTCCGGAAGGCCATAGATTCCGAAAGGCGGGAACAGGTCGACGCGGCGCGGGTAGTCGCCCTCCGCGCACGCCCGACACAACAGATCCCGGCCCCGATCGGTGTGCCGCACGGCAGTCACCGGAGCGCGCCAACATGCCTCGCACGTGCGGACATCCGTGATCGACAGATCGGGGCTCATCCAGCACCCTCAAGCGCAGTGGCCCCCTCGTGACACGGACAGGCGCACGTCGGCAGACGGCACAGGGCATGCACACCGGCCAGGTCTGTCACCAACGCGCTGCGACACACCACGCTGCACGGCCCGTCCGCACCGGCCGACAACGCGTCCAGCGCTACAACCGGCTCCCCGGCCTCATCGCCCCCGGTGATCGGATCACCTC # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 4355027-4354750 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070245.1 Streptomyces californicus strain FDAARGOS_1212 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4355026 30 93.3 31 ........T....................C TGCACCGTCGCCAGGCGAGCGCGCAGGACGA 4354965 30 96.7 31 ........T..................... AGCGCGCGGTGTCGTAACAGGGCTCGGCCGA 4354904 30 93.3 31 ..............G..............C GGCCGCACTGGCACTACCGCACCGTCGCCTG GGG [4354885] 4354840 30 100.0 31 .............................. CGGTGCGAAAGCCGAGCTGCGCCCAGACCGG 4354779 30 90.0 0 ...........T................GT | ========== ====== ====== ====== ============================== =============================== ================== 5 30 94.7 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : ACGTCACGGAGTTGGGCAAGCTGGGCGGGGTCGGTCGCTCGCTCGCCCTGAACGAGCACGTCGGTGGAGCCCTCAACCTCGTAGAGGGTGGGGCCATCCCCGTCGTCACTGGTGGTGCCGAGAAACCTGAGAACCGTCATGACGCCCTCCGCGTGCACTGAGTGGAAGCCCAGGATGTGATGGATGGTGAGGGGGTGCCGCCGGATCGCGGATGGAATTGCAGATCGCTCAGGCGGCCCGGGAGTTGAGCGCGGCCAGCAACGGCGGCACGGACAAGCGTAAGCAGAAGGGCTACCACGCACACGCCAGGTACAACGCATACGGAGCACGGCGCCCCAGCTCTCACGCTCAAGCCGGACCGGCCGAATCAGCGCCAGGCACAATGACACCAGCCGCACCGCACATGCGTGAACGCTTCACACGAAAGGCGAGAAATGCCGGTTTTCCAAGAAGTAGGCAAAAACCGCCGGTCCGCCACCTAAACCACCAGGTCACGAAGG # Right flank : CGAGCCACCCGCCGCACCTGCCCCCGGCCCGGGAGCGTCCAGGCGCGGCCCGCCCGAGGCCGCCGCCCTCGAAGATCCGCCCCTACGCTTCCGACGCCCCCGACACCGCCACCCGGAACCCGACACCGATCGCCGCCAGGTCCTCCTCGTACGCGCCGTGGCGGCGGGCGCAGCGGGCCAGGTCGCGGTCGTGGCGGAAGGCGCCGCCGCGGGTGATGTGGGGGTCGAAGGCCCAGTCCTCGGTCTCCGGGACCTCGGCGGGCGCGCCCGGGTACGGGGCGTAGAGCGTGGACGTCCACTCGTCGGCGTTGCCCGCCATGTCCAGGACGCCGAACGGGCTCGCGCCCTCCGGGAAAGAGCCGACCGGCGTCGTCGTGCCCACGCCCAGGTCCACCAGGTTGGCCAGGCCCGTGCGGTACTCCTCACCCCACGGGAACTCCCTGCCGTCGTCGCCGCGCGCGGCACGTTCCCACTCGTCCTCGGTGGGCAGGCGTACGGGG # Questionable array : NO Score: 3.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4359840-4359566 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070245.1 Streptomyces californicus strain FDAARGOS_1212 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4359839 30 93.3 31 .......T................T..... GGTGCGGGGCGGTGCCCGGGTGGTCGACGTA 4359778 30 93.3 31 ........................T....C CCGCCGCAGGAGCAGCCGCCGTGGGCGTGGC 4359717 30 96.7 31 ............................T. CCCCGGTCGCCCACCGCCGGTGAGGCTTCTG 4359656 30 100.0 31 .............................. GCCTCGCCGCCGTGATCGAGCAGGTGGTCGT 4359595 30 86.7 0 ...........T...A.........C...T | ========== ====== ====== ====== ============================== =============================== ================== 5 30 94.0 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CGGCAAAATCCCACCCCACATCCCCACGACGACAGAAGCCCGATCACCGGACACCAAGGAACCGACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGACCACCCGGGGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCCACGACAGCGACCCCACCACCCCCACCCCGGACGAGATCGCCGCCGTCAAAGCCCACATCACCAACCTCCGCAACCTCCTCAAACCCGTATAACCCCCGCCCCAAGAACCCCCGTTAGGCAGAACAGACACACCGCATCCCCAGGACCAGCCCCACAGAGAGCAGAACCGCAGCCCACCCGCCGAAGCCAGACCCAGATAGGACCGGCAGCGGGCAGAATGGGCAACAGCCGAACCACACGTGACCACTTTGCGACGGAAGGCGAGCTATGCCGATTCCTCAAGAAGTAAGCAAAAACCGCCTTCCCGCCACCTAAACCCCCAGGTCACGAAGG # Right flank : GCGCCCCGAGCAAAGTGGCAGGTCACACCCCGCGCGGGTACTCCCCCTCCCCCGTCCCGATGATCCCGCCCGGGTCCCGCAACCACACCTGCTGACCCCGGCCAGTCACCGTCAACCCGAACTCCTCCGCACCAGGGCGACCGGCCGACTCGTACTCCCACCAGGTCTGCTCGATCTCCTCCCACAGCAGCCCGATCCCGTACTGCCACACCTCCTCTCCCGAAGCCGTCGAAGCGCCACCGACCTCGCTCGTCACCCACACGCGCACCCCGCCACCGGCGACACTCTGGTGAACCATCCGCACACCGGGCAGTCGCGCCCCCGCGAACAACGCGAACCCGAGGTCCAGCAACCGGGCCGGGTCCAGACCAGCCGCCCGCGCTCGCCCCCTCCCCCGTACCTCATGCAGATCGGGCACGCGGTGCGAGCGCATCGGCATGTACGTGGCCCCGCCGCAGAACGGCCCGACCGCGCTGCCGTCCCCCTGAACCCGTAGCCGA # Questionable array : NO Score: 3.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 4386226-4385157 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070245.1 Streptomyces californicus strain FDAARGOS_1212 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 4386225 30 93.3 31 ..............T..............A GCGATGCGAACACGGGAGGATCTCCTGGACG 4386164 30 96.7 31 ..............T............... TCCTGACCGTCCTCGGCGACCGGGACACCAT 4386103 30 96.7 31 ..............T............... CCCTCGCCCACCACATCCCCCACGTGCAGTC 4386042 30 93.3 31 ..............T..............A GATCCGTCGCGCTGATGCTCACCGAACTCGC 4385981 30 96.7 31 .............................A GGGCCTGCGCCGCGAGGACCATCTCGCGGGC 4385920 30 100.0 32 .............................. GCGATGACACGGTCATCACGGCCCGGGGAATA 4385858 30 100.0 32 .............................. CTCACGGTCTCAACGCCGCGGTGGCGGTGTAC 4385796 30 93.3 31 ............................TC CGGGCGGGCCGTCCACGTTGACGGTGAACTT 4385735 30 96.7 31 .............................T GCTGGCCCTTGTTGCCGGCCCAGGGGTAGTC 4385674 30 100.0 31 .............................. GCTGGCACCCGCACATCCACGCCATCGTCCT 4385613 30 96.7 31 .............................T CCCAGATGGCGGTGCAGCGGAGCCTCGCCGC 4385552 30 96.7 31 .............................C GTGCCGAGGCCGGCGTGCGCTGTGATCTCGC 4385491 30 90.0 31 .....................A......TC CCGGCTCGTCCAGCAGCTCGTGGTAGCAGGG 4385430 30 93.3 31 ...........A.................A ACGGCAACTGCGTCGAACTCGCCCAGCTCCC 4385369 30 93.3 31 .CA........................... CGGTCGACATCTCGGGTTCTCCGGTCCAACC 4385308 30 96.7 30 .............................C GGGCGAGGGCGGCACCATGACGCCCGGCCA 4385248 30 96.7 31 ......................C....... CGTTGGCGTAGGCGCACCCCTGCTCCGGGCC 4385187 30 83.3 0 ...T......T...............A.TT | C [4385161] ========== ====== ====== ====== ============================== ================================ ================== 18 30 95.2 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CTACGGGGCGCCCGCAGTCGAAGGCCGGGAGTGGTGGCGCGAGAGCCTGGATACGCCGCCGGAAAGGTCTCGGACCTTCTCCTACTCCGAACTGGCCGTCCACCCCGAGAAGCGGAAGCAGGGGCTGGCGGATGCCCTCTCACGGGCTCTCCTGGCCGGGCGGCCCGAGGATCTCGCAGTCCTCCTGGTGGACGTCAAGCACCCCCGCGTGCAGTCCCTGTACGAGGGCTGGGGCTTCCGGAAGGTAGGGGAGCGTCAGCCCTTCCCGGACTCGCCGGTCTACGCCGTGATGCTGGCCGACCTCCCGCTTGACGAGAGCCACGGAAGGTAGAGCCGCGCCTCTCCCATCGAAGCCGGGCCGATGAGACCGGATGGTGGGCAGAATGGCATCAGCCGAACCACACCTGTGACCACTTTGCCCCGAAGAGCGATATATGCCGGTTTCTCAACAAGTTAGTAAAAACCACCTCCCCGCCACCTAAACCCGCAGGTCACGAACA # Right flank : GTCCCAAGTCGAGGAGTCTGCGGACCTACCAACGCAGTCGGGGCAGTAACTGCGGTCGCCCTACCTGCTTCGATACGGAAATCTACAGGCCTCGCAACGAAGTTGAGCTGACGGTCAACGACCTCAACTGGCTCCGTTCGGTGGCTGCGCGATGCGACTAGCGCGCCCACGTCTTCCAAGGAACCTCGCCCGCCGCAACGATCTGGCTCGGGCTTCGGGGGTAGATCCATTATCGCGCTCCGCGAAGGCGCTTGTCACCGTTCTCCGGAATGATCTTTACGCCCGTTATGCACTCGTAGGGTTACAGGGATCGAGCACGAAATACCAACCCGATGTGGAGTCGAGAGTGGTACATGACGTTGCCGCACTGGCGAAGGAACTCACCGCCATGGCTGCGGCCGATCAACAGTCCTCAGCCCACGCCAACAGCGATGATCCCGCCGAGCAGTTGGCATGGCGCCGGATCACCGCGCAGCACGGCGACCGGCTCGGTCAGATCA # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 4390358-4389719 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070245.1 Streptomyces californicus strain FDAARGOS_1212 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================== ================== 4390357 30 96.7 31 .............................C CGCGGGCCTCCGCGTCCACGGCGAGAGTGAG 4390296 30 96.7 31 ...A.......................... GTCCGTCGCTGCCGACGCCGAACCCGGTCAG 4390235 30 96.7 31 ...A.......................... CCATCAGCGGCACCCACGCGGGGCGCTGAGT 4390174 30 93.3 31 ...A.........................T CGCGGCGGTCATCGGGTTGCTGGGTCATGCG 4390113 30 96.7 31 .............................A GCGGCTTCGCGCTCGAATTGTGGGCGGAGGT 4390052 30 100.0 31 .............................. GCACCACACCGCTGGCCGCTCTGGCCGCCGG 4389991 30 100.0 31 .............................. CCCTTGGTCGGGTTGGCCGCGTGAAGGAGCT 4389930 30 100.0 90 .............................. CGTACGCCTGGCTCCAGCTGGAGGGCTACGTGTGGCCCCCGCGCGCGGGGGTGGCCCTCAGGCGAACCGGAATTCGGTCTGCCCCGGCTT 4389810 30 90.0 32 ...........A.............C...T CGCGGCGGATGACCTGGCCCTCGGGATCGAGG 4389748 30 80.0 0 ......................CCAG.GT. | ========== ====== ====== ====== ============================== ========================================================================================== ================== 10 30 95.0 38 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : AACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGAGCCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCACCGGCTCGATGCCCGGCCTCTGAAAACCAACCGACGACGGTCGGCACACACCGCAGGTTGCAACCGCCGACCTGCGCAAACACCTCGGGAGACCGCCATACCGGCCTCGAAGGAATAGCCGCGCCCCAAGCACACACCATCAACCTCCGCCACCCCCTCAAACCGTCGAACCCGTCGAACCCCAACCACGAAGCCCCTCCCGAAACGGGGGTAGACACACCGCACACCGACGCCCAAAGCCACGAAAGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGCCCGGGTGGCGGGCAGAATGGCATCAGCCGAATCACACCTGTGGCCACTTTGCCCCGGAGAGCAAGATATGCCGGTTTCTCAACAAGTTAGCAAAAACCGCCTCCCCGACACCTAAACCCGCAGGTCACGAACA # Right flank : AATGGTCGCGCGGCCCGCACCGTAGCCCGGACAAGAAACAGCCCTACAGGTCAGGACGTTAGGTCGTCTCCCTCAACGTCGCTTCCCCCTGCGCGTAGGGCGTTGTGTCGGATGTGTGCGTGGTGGGCGTCGCGGAGGGGGTCGGTAATGTGGAAGCTGTGGCTGCCGGGGTGGCCCTCGTACAGTCCGCACCACTGCCGGTAGTTCTCGCGGAGGTGGTGGATGCGGTAGGGGCACAGGGCGAGGAGGACGAGCCGGTGGTGGACGCGGTGGCCGCCCGCACTCGTCGCCCACAGGAACCACAGGCTCACGGGCGGCTCCGTCTCCGCAGTCCACAGACGGGCGGCGTGCTCGGTGGTCTCGCCGTGCTCGCCCAACTCGCACAGCACGTACGGCTTTTCTTCGAGGAGGTCTTCGGCGTCGTCCGGGCCGTCGTCCATGGCGAGCAGGGCGGGGAGTGCTTCGTCGGGCGGGAGGTTGGTGATGGCGGTGCATTGCAG # Questionable array : NO Score: 4.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.52, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : GTGATCCCCGCGCACGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 4481015-4481288 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070245.1 Streptomyces californicus strain FDAARGOS_1212 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4481015 30 96.7 31 .............................A TCGGGTTGCGCAGCATCCGGGTAATGACAGC 4481076 30 100.0 31 .............................. TCACCCGGCCGCGCCGGGCCCACATCCGGTA 4481137 30 96.7 31 ............C................. CGCCGTTCTCCTCCTTGAGGGTTCCGGCGAT 4481198 30 83.3 31 ...........TGG............T..A GCAGGGGCAGGAAGTCCAGGACTGCGGCGCC 4481259 30 70.0 0 ..............GC.T....CT..GAAT | ========== ====== ====== ====== ============================== =============================== ================== 5 30 89.3 31 GTGGTCCCCGCGTACGCGGGGGTGGTCCCG # Left flank : CCGACAAGATCCCGCCCCGCCTCCCCGGGGCGGTGGAAGTCCGTTCGCCGGGCGCCAAGGAACCGATCTACGAAGCCCTCGTCGAATGCACCAACTGTCGCCGTCCAGGCCCCCCGCAAGCCCTGCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCACGGGCAGCGACGACACTGCCGCACCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCACCAACCTCCGCAACCTCCTCAAGCCCGTCTGACTCCCCGACCACCACACCCTCGTCGGGCAGGTCGGGCATACCGCAGCCCCGGGGCCCACGCCTGCGAAAGTCCTGACCACAGCTCTTCCACCGAAGCCGGGCCGATGAGACCGGCGGCGGGCAGAATGGCATCAGCCGAACCACACGTGACCACACTGCGGCAGAAGGCGAGATATGTCGGCTTCTCAAGAAGTAAGCAAAACCCGCCTTCCCACCACCTAAACCCCCAGGTCACGAAGG # Right flank : TGCCGCTCCTCAGGTTCTTGCCGTGCTCACCGACATCCTTGCCGCCGTCGAGGACGGTGAGCGGGGGGCCTTGTGGAATCTCTCCGAAGGCGGGCGGGAGTTGGACGCCAATCTGGTGTGGCTGCCCGCCGGGGCCGAGGTCGGGGAGCATCAGGAGGACGTGCTCGACGTGTTCCTCGTCGTTCTGGAGGGTGGGGGCACGGTGAAGGCGGCGGGCGGCCGTGAGCTGGGGCTGGAGGCCGGGGCCGTGCTCTGGTTGCCGCGTACGTCCCGGCGCGCGCTGGCCGCCGGGCCGGACGGGCTCGGGTATCTCACCGTCCACCGCCGCCGCCCCGGCCTCGCGATCTCCGCGCCGAGTGCGGCGTACGAGGGTGGCGAGGGGCCCTGCATGCTGGACCGGGTCTGCCCCGAGTGCGGGCGGCTGTCGCAGGACCCCGCCCCGGTCTTCTGCAGCCGGTGCGGGGAGCGATTCCCCGAGAGGTGAGCCCGGCGGTGAGCCG # Questionable array : NO Score: 3.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGTACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.10,-12.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //