Array 1 963094-964525 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030185.1 Salmonella enterica strain SA20094620 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 963094 29 100.0 32 ............................. CTGTCACGTGAGCGTGAGCGCAGAAACGCACT 963155 29 96.6 32 ............................A GTTCCTCGCCGGGTGCCAGCCTGTCGTAGATC 963216 29 100.0 32 ............................. TCGACCCTCTTTAACCGGCTGAATACTCATCA 963277 29 100.0 32 ............................. CCGCTCTGAATAGTTGACCACTCAGACCACGC 963338 29 100.0 32 ............................. CAGCCGGACGGCACAGGGTTAACCGATATTTA 963399 29 100.0 32 ............................. TAATCGCGTGCTTGGATTGTGGCGCATCCTCC 963460 29 100.0 32 ............................. AATTACGTACGTTTGAGGGGTTGGGGATTCCG 963521 29 100.0 32 ............................. CCCCACGCAATGGCGCTAGCACTGGTTACGGG 963582 29 100.0 32 ............................. AGATAAAATCAGAAATTTACGCCGAACTTCAA 963643 29 100.0 32 ............................. TGGACACGTTTAACGTTGACGTTGATAACATC 963704 29 100.0 32 ............................. ATAATTGGTAGCACCGGTACGGGGAAATCAAC 963765 29 100.0 32 ............................. ACTGGACGCCGCAGGGAGTTCTTATCAACGCT 963826 29 100.0 32 ............................. CCTGATTAATCGGGGGATGTAATGGCAAACGA 963887 29 100.0 32 ............................. TATTCAGCGTCAGATGAGCCTATGTCGCAACG 963948 29 100.0 32 ............................. CGCCTGTATAGGTGGCGCGGAATGATGGACGA 964009 29 100.0 32 ............................. CGCCTGTATAGGTGGCGCGGAATGATGGACGA 964070 29 100.0 32 ............................. GAACGACCGGACTTATTCGCGCACACGAATGC 964131 29 100.0 32 ............................. AGGGATTACGCACCGGCAACCGTTGTTTGCCC 964192 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 964253 29 100.0 32 ............................. CCGTGGGGATGGCCGTGGGATGCGTCATGGTG 964314 29 100.0 33 ............................. CGCCCTTTCATCCGTTCAGGTGGATTTCATGAC 964376 29 100.0 32 ............................. ATGTTTAATTTTGTAGCCCGCTACCTATCGCC 964437 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 964498 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAACTGGAGCGGATAAACCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 980796-982718 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030185.1 Salmonella enterica strain SA20094620 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 980796 29 100.0 32 ............................. CGCAGGACATCGGCGAGGATTGGCCAGGCCAT 980857 29 100.0 32 ............................. CGAAATCAGGCGTTTTTGGGTTTTCCTCAGTA 980918 29 100.0 32 ............................. GCTTTATGCTGCAAACTCTCCATCTCGGGAAG 980979 29 100.0 32 ............................. CGTAATTGGTAGTTCATCCGCTCATTTCATAT 981040 29 100.0 33 ............................. GCGTGCCTCATACATTCCATCACCTCCATCGCC 981102 29 100.0 32 ............................. AGCTATCGCGAAACGGTTTCGTAAGCCGTGAT 981163 29 100.0 32 ............................. CACGGAGTTAAACGCCGCTGCAGCGCTGTTTA 981224 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 981285 29 100.0 32 ............................. AGCAACATCGACAAACAGGCGCTACGTGAAAC 981346 29 96.6 32 C............................ TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 981407 29 100.0 32 ............................. GATCAATATCCGCCACCTCTTTACCATCAACA 981468 29 100.0 32 ............................. GACGATGTTACCGGTGCTGATGTGCTGGATAC 981529 29 100.0 32 ............................. TATCACGGATAGGATATAAACACGGTTAAAAC 981590 29 100.0 32 ............................. TCGCTGTTAACCGCTCTCGCACTGCGTCAGGC 981651 29 100.0 32 ............................. CCCCTGGATTCACAGTAAAGCCGCGCCTTATA 981712 29 100.0 32 ............................. CGTTATCTTTTGAGCAGAGCACGCCGGGGACG 981773 29 100.0 32 ............................. ATTACTGATTTGTTCATTTTAATTCCCTTTGT 981834 29 100.0 32 ............................. GCATATGGAGAATACATTTACTCAGTGAATAT 981895 29 100.0 32 ............................. TTAGGGCATTCGGTCATAACGGATACGCCGCC 981956 29 100.0 32 ............................. AATATTTCTGGCGCCAGGTGCATTCCGTCGCA 982017 29 100.0 32 ............................. TTCTCTGGAATTATATTTTGTTCCGCACGTTC 982078 29 100.0 33 ............................. CCGTATCTGCTCTATCAGCTCGGCTCGGCGCGC 982140 29 100.0 32 ............................. CAAACTGTGATTATGTGCTGACTCAATCTTTT 982201 29 100.0 32 ............................. CTGACGGTAAAACTACGGTACCGCCGTAGTAA 982262 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 982323 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 982384 29 100.0 32 ............................. TCTGGTCATAACATCGCAGCAAAATCAAAAGA 982445 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 982506 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 982567 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 982628 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 982689 29 100.0 0 ............................. | A [982716] ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCATCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //