Array 1 296317-297809 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUQT01000023.1 Salmonella enterica subsp. enterica serovar Typhimurium str. 34502 SEET4502_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 296317 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 296378 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 296439 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 296500 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 296561 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 296622 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 296683 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 296744 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 296805 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 296866 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 296927 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 296988 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 297049 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 297110 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 297171 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 297232 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 297294 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 297355 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 297416 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 297477 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 297538 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 297599 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 297660 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 297721 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 297782 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 313941-315844 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUQT01000023.1 Salmonella enterica subsp. enterica serovar Typhimurium str. 34502 SEET4502_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 313941 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 314002 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 314063 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 314124 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 314185 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 314246 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 314307 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 314369 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 314430 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 314491 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 314552 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 314613 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 314674 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 314735 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 314796 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 314857 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 314918 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 314979 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 315040 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 315101 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 315163 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 315266 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 315327 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 315388 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 315449 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 315510 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 315571 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 315632 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 315693 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 315754 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 315815 29 96.6 0 A............................ | A [315841] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //