Array 1 523753-524428 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028396.1 Listeria monocytogenes strain 2016TE3773-1-1 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 523753 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 523818 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 523882 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 523948 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 524012 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 524075 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 524139 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 524204 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 524268 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 524334 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [524357] 524400 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 95.3 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 2631608-2629590 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028396.1 Listeria monocytogenes strain 2016TE3773-1-1 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2631607 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 2631541 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 2631475 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 2631409 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 2631343 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 2631276 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 2631210 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 2631144 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 2631078 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 2631012 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 2630946 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 2630880 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 2630814 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 2630748 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 2630682 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 2630616 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 2630550 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 2630484 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 2630418 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 2630352 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 2630286 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 2630219 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 2630153 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 2630087 36 100.0 30 .................................... TAGTTATTTGCTTAGAAATGTCATCCATCA 2630021 36 100.0 30 .................................... CTAGAAGCTTTGACATTAATATTACGCTTA 2629955 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 2629889 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 2629823 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 2629757 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 2629691 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 2629625 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //