Array 1 216631-216064 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKKQ01000034.1 Pectobacterium brasiliense strain PcbHPI01 contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 216630 28 100.0 32 ............................ GCATTATTCACCGCTGGCAACCACTGTATTCT 216570 28 100.0 32 ............................ GTTACCCCGTCTATGCAATTTCAGGATCAAGA 216510 28 100.0 32 ............................ GATGCGGTTGCGCTGGGTATGGCGACTGATGC 216450 28 100.0 32 ............................ ACGTTGATTCCTGATGGATTTGCGCCGCGAAA 216390 28 100.0 32 ............................ CATTAGCTCTGATGATTCATCGGATAGGTCGA 216330 28 100.0 32 ............................ ATACCCCGTGTGATTAAGAACATCTTGATATC 216270 28 100.0 32 ............................ GGCAAGACGCTTTGCTCTAACCATTCCTGCAT 216210 28 100.0 32 ............................ TAACGACTTCAGTGACCGGCCGAATGACACGC 216150 28 100.0 32 ............................ GCGATGATGACGAAAAGATAATGAGGAATAAA 216090 27 92.9 0 .......................-..T. | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCGACGCTCGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAATGTAAAATCGTACCTGACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTACGTCGACGCTCGGTGAACAAAGGCTGGCTGACAGAGGCGGAAGCCGCAGCACGAATTCCTGATGCGGTGGAAAAACGTAGCGCACTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGTCAGATGTTCTTCGTGTTTATAGAACATGGCCCGTTACAGGATGCTCCTGTCGCAGGACGCTTTTCCTCCTATGGCCTAAGTGCAGAAGCCACCGTACCCTGGTTCTGACCCTTTTTTGGCGACCAGTTGCAACCCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGACAAAAAAGTCATATTCTCTTTAACAATCTGGTGGTTAGATTAAAAACCTAACC # Right flank : CTATCGAAATGCGTCGCTGGTGCGACGCATTTTAGAGGCTTATTCCCCGTGGAGGGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTTAGACTGTTTCCGAGCAGGCTACCTTTTAGGTGCGCCGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGCTCATCCTCAGGCACTAAACGATTAAAAAACTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGACGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCAGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGGCCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 225204-226071 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKKQ01000034.1 Pectobacterium brasiliense strain PcbHPI01 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 225204 28 100.0 32 ............................ GAAAACGGCAGGCCGAAATCAGAAAAAAGCCA 225264 28 100.0 32 ............................ GCAGCGTCAATAAACTCGCGGGCCATCTCTTT 225324 28 100.0 32 ............................ GATAGCGTAAATGCCATCCGGTCACAGTTGCT 225384 28 100.0 32 ............................ GCCGTTCGCCTCGTCGTTGACCGTGAGCGAGA 225444 28 100.0 32 ............................ ATGCCCGCGCTTGTCGCAGCTTCTCGAACATA 225504 28 100.0 32 ............................ GTTGAAGCTGGCGAGTTTGAAAAGAAGCAAGC 225564 28 100.0 32 ............................ ATGCGAAAACGTGGCGGAAGATAAAGAAAATT 225624 28 100.0 32 ............................ TTGCTCACTAGCCATTTTAATTGCGTCAGCAA 225684 28 100.0 32 ............................ TCGGAATTTATTAGAGCCATTAAATTTAATAA 225744 28 100.0 33 ............................ GTTAAAGCTGGATGACGGGAATTGAATGTAGGT 225805 28 100.0 32 ............................ ACCCGCGGCTTTGATGTTCAACAGCGCCCACA 225865 28 100.0 32 ............................ CTTACTGAGATAAAAAAAGGCGATAATATAAT 225925 28 96.4 32 ...........C................ TATTGATGACGTCAATGTTTGCCTCTTGAATC 225985 28 96.4 31 ...........C................ CGCGTCGGCGGGATTTTTTTGCAGGAAGAAA 226044 28 82.1 0 .............C......T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTTACAGAAGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAGTAAATCGCAGGCTAACCATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGTCTATTTCACAAGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : ACGCCTTAAGTGCCATTATCTGGCTATTATCGAGGTAACACTATCGTCAGTGTTTGATGTGTTATCGCCTTTAAATAACGTATTTTTGATTCCCTTTTCTCGTGACATTTTTAAGTAACGGGTTTCTTTGTGTGGGATGGAAAATTGCGGATTTGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAACCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACACTTGTTGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCCAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //