Array 1 1049089-1050519 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025217.1 Salmonella enterica subsp. enterica serovar Tennessee strain PIR00537 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1049089 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 1049150 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 1049211 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 1049272 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 1049333 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 1049394 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 1049455 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 1049516 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 1049577 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 1049638 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 1049699 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 1049760 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 1049821 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 1049882 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 1049943 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 1050004 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 1050065 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 1050126 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 1050187 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 1050248 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 1050309 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 1050370 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 1050431 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 1050492 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1067143-1070040 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025217.1 Salmonella enterica subsp. enterica serovar Tennessee strain PIR00537 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1067143 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 1067204 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 1067265 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 1067326 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 1067387 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 1067448 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 1067509 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 1067570 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 1067631 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 1067692 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 1067753 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 1067814 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 1067875 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 1067936 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 1067997 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 1068058 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 1068119 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 1068180 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 1068241 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 1068302 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 1068363 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 1068424 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 1068485 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 1068546 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 1068607 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 1068668 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 1068729 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 1068790 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 1068851 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 1068912 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 1068973 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 1069034 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 1069095 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 1069156 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 1069217 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 1069278 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 1069339 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 1069400 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 1069461 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 1069522 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 1069583 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 1069644 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 1069705 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 1069766 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 1069827 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 1069888 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 1069950 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 1070011 29 96.6 0 ............T................ | A [1070038] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //