Array 1 35779-36989 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTX010000002.1 Listeria booriae strain FSL L7-1547 NODE_2_length_259336_cov_56.694761, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 35779 30 100.0 36 .............................. TATTATAACATAAACATGATTAGGAGGAATATGTTT 35845 30 100.0 37 .............................. TTGAGCGCTTTGGCGCCCAAACTAAAATGGAAAGCTT 35912 30 100.0 36 .............................. ATGTCAAAAGAAGCTTGATTGTAACCTAATGCATTC 35978 30 100.0 36 .............................. TCTTCATCCACCTTTTCTAAGAAAATGTAGTTTTTC 36044 30 100.0 34 .............................. GAATGTCGGAATCGAGTAGCGCCATCACTGCATC 36108 30 100.0 37 .............................. TCTAATATCCATCGTATTAGACCCAGTCATACTATAC 36175 30 100.0 36 .............................. CTGGTTGCCGCGATATGGGAGCAATGATGGTACAAA 36241 30 100.0 34 .............................. CTCTATATACTGATTTTATCACAAATCAAAAACA 36305 30 100.0 36 .............................. ATCGAAGAAAAAAGATGAGTTGGAAGCATATCGAAG 36371 30 100.0 35 .............................. CTCAGTAAAAACAAGGCTGATGCAAACAAATAGAA 36436 30 100.0 37 .............................. TCGTTCAGTTTAAATTTTCTTACTCAATCCTATGTCA 36503 30 100.0 37 .............................. AAACTAAGGCTCGCATCGTCCCACCATGTGAAAATGG 36570 30 100.0 36 .............................. AAACACGATGTATATTTAGAGCCTTTTTTTGGATCA 36636 30 100.0 36 .............................. ATTGTACGTGCCGTTACCGAAATGATGGTTGACCGC 36702 30 100.0 34 .............................. TTCTATCGTATATTGTGTATCCGTCCGCATCTGT 36766 30 100.0 34 .............................. ACGAAAGTTTAAACCCACTAGCAACGCTCCTTAC 36830 30 100.0 34 .............................. TTGATCAAATCAATAGGTGACTCACGGACCTTGT 36894 30 96.7 36 ....................G......... AAGGACAAAGGCCAAACGGTACACTTTACAAACCCA 36960 30 76.7 0 A......C.C.....C.A.....CA..... | ========== ====== ====== ====== ============================== ===================================== ================== 19 30 98.6 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGGTATGTATATTATCTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACACACGTGCAAAAATCGGTATTCGAAGGCGAAATAACCCCAGCACTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTGTATAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTAAGGCTGTTTTTGAAGTTCGGCTTGTAAGGTTAGAGAGCGATAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TCAATTTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTGCCAAGCAATGTTCGCAGCAGTATACTCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAAAATGACTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAACACTGTACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCCATGTCACGTGTATCAATAAAGCTCGTCCGCGCATTGCCTGCAGGAATGAATAAATCATCATGTTTCTGAATA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 18948-18713 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTX010000037.1 Listeria booriae strain FSL L7-1547 NODE_37_length_19553_cov_64.115219, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18947 36 100.0 30 .................................... TTAAAGTTGGCGATCGCGTGCAGTGTATTT 18881 36 97.2 30 ........................A........... CGGATAAGTTGCTTGCAGAACACGAGATAG 18815 36 100.0 30 .................................... TCAACACCCATTGTAGAACGCGAAGAACCG 18749 36 86.1 0 ..........................TG.A..C..A | A [18718] ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.8 30 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Left flank : GTTTTTCTTGGTGTAATACCGCTGACATTAATTCTGTTATTTCTTTGTTGATTGCTATTTTATGTTTATTTTTTTCTTTTTCGTTGAGTTTCCTCACTGTTTTGTTGAGAATACTCTTATAAAACGACTCTTTCTTTTTATCAAATATAATTTCTTCTGTCTTGTTCTCATCAATACCTTCATAAACCAACTGGCCTTCTTTACTTGTCCTCTCCATTACGATAGTTCTTCCATCAACTCTCATTTTGGTGATTTTCATTTGTCTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAGATGTTTCAACTTTCACATGTGTATGATATTGCTAATATTTATTAATATATTCATTATACAAGAAGGTATTACGTAAAACAACATCCATTGGCAATTATCCACTTTGCTAATAATTGAATAAAGCCATAAAAACTACTGATCCAATTCTTGGAATCACAGTTTTTATGGCTTTATTGTCGAATACTTATCCACAGAAGAG # Right flank : TCTATTTTACTTTCAACAGTTTAACTATACCAAATTATTAGTAACTCTGCATCTTCGCGTAATCACACGTACTAAGTAACTGTATTTAGCTATAATTATGGCTTTTATAATACGAAACGTATTCATCAATCTTTAAGATACTTAACACCAAACGATTTTGAAAGAAAAGCGAATTAAATTCTATTTATTTTTGTCCAAAATATTGACACCACATCAATATCGCCAATCGTTCACTTTACTCATCTAATCATATCTAAAAAGGATAGGAAGTCTTTTGCAATCCAATAAGTATTTTCTTCATCGGTTGATTCTTCAAACTGAAATGAGTCATCCCAATAATAGATACCTTCAAATTCTCCCTCGCAAATCATTACAATCATTCCTTGCATGAGATCATCGCCAATAATTATTGAACCTTCCATCATATCTTCTTTTAGTTTTTCCATCCACGTCTCTATGTTAGAGGCACTTTCCCCAGTATTAACACCATATAACACATC # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 2161-155 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTX010000041.1 Listeria booriae strain FSL L7-1547 NODE_41_length_14818_cov_53.064107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2160 30 100.0 36 .............................. CTGATTGCGGTTGAATCGTTTTATCATATAAAGCGT 2094 30 100.0 37 .............................. ATCGAATAGCCAGACAAATAATCAAAACCAGCCTTTT 2027 30 100.0 37 .............................. AATATTGGCACATTAAATTCGCGCTGGAAGTCCGCCA 1960 30 100.0 36 .............................. ATTTTCCCCAAAGTTCTTTTGCTTCTCTAGCAAGCA 1894 30 100.0 35 .............................. ATATCAAGAGGAAAAACGAAAAATAATTTCGACAT 1829 30 100.0 34 .............................. TATGCTCATTCTTTACTTTTAGTAGTTTATCTTT 1765 30 100.0 35 .............................. GATCAAAAACATTGAATTTGAAAATGGAGGTGAAT 1700 30 100.0 36 .............................. TGACATACTGCGCTTTTAATCGTTTAACGCTATCGC 1634 30 100.0 35 .............................. CTGTGTCTGTAGCATGGATGTGTTGTTGTCTTCAT 1569 30 100.0 37 .............................. TTTTTCATAGAAGAAGCTAATACTTTATCGGTGTATA 1502 30 100.0 36 .............................. AGAGCTGATCCGGTGGCTTGTCCTGCACTGTTTCCG 1436 30 100.0 35 .............................. ATCAAAAACCGTTTCTCAAATTGAAAAAGAAGAAA 1371 30 100.0 35 .............................. TTAGTAAGCAAGTAGATAAACATACAATTCTTCAG 1306 30 100.0 36 .............................. ACATAGACGATGCAGAATTAGAGTTTGTGCTGTGTG 1240 30 100.0 34 .............................. TTATCTAACACTTAATCGCAAATTGATAAATCAA 1176 30 100.0 36 .............................. TATACTGCCGCCGAACGCAACGTTGATTTTACCGAA 1110 30 100.0 36 .............................. AAATACACTAAGATGAATGAGCTTGGTAATACTCAA 1044 30 100.0 37 .............................. AGAGAAGAAGAGAATGTGGCACCATTGAGAGAAGAAC 977 30 100.0 37 .............................. ATCCGTGTACAAGGGCAATCTCCTGCCCAATATCAAT 910 30 100.0 37 .............................. TGACAATCGTTTCAATCGGTAAACCTGTGCGTTTCAA 843 30 100.0 35 .............................. TATATACTTGTTCTTGAACCGTGTAATCTTCTCGC 778 30 100.0 34 .............................. CAAATAATAGCACAAACCAGTGCTTCCTTGTCAT 714 30 100.0 36 .............................. TAGCCTGGTAATACTGTAATCCGGGTACGCAATTTG 648 30 100.0 37 .............................. GCCTTCGTCATAACAGTAACTAACTTATCTAAATCAA 581 30 100.0 35 .............................. AACTAATCGCACTTGTTTTTAATTTAATACCTACT 516 30 100.0 35 .............................. AAGGTTGTCCCTGTTTCTCCAGCAAAGATAGCAGT 451 30 100.0 37 .............................. GTAACAATGGCTTTCTCCAAACCAATCGCCAAGGACT 384 30 100.0 37 .............................. CTGATTTACCTGCCGCAAATTCACCGTAATGTGTCCA 317 30 100.0 36 .............................. TTGGTATCAGTGAGTTTCAGCGATGTTCTGAAAAAC 251 30 100.0 37 .............................. AACTAAAAGAATGGTTCTTGGACGATCCAAGAATGGA 184 30 93.3 0 .....................G..T..... | ========== ====== ====== ====== ============================== ===================================== ================== 31 30 99.8 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAGTTTTGAAGTGCTGGATAAAGAACGTCTCGTTCAGAAAACAAAATTTGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGCAAACAATTCCTGCGAATAGCGCATTGATTGTACAAGACGGGAAGAAAAAGGTAATTTCTACAGATAATCTAGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATGCATTGGTACTAAAGGGGTTAAGCCTATTTTCGGAGTTTGGATTGTAAGGTTTGAGGGCAATAATTTAGAATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TGTCAGCGAGGCATATTTTTCAGAGTTGCAAAACAGGTTTTATCTAAAGTAGGAGTTAAAACATAATAAAACGAATTGAGTAACTATCCACCCGTGTGAACGGGTGGCTTTTTATTAGCCCTAGAAGGGCTCAATACTCGCTTGGCCCCTAAAGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 7349-5408 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTX010000041.1 Listeria booriae strain FSL L7-1547 NODE_41_length_14818_cov_53.064107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 7348 30 100.0 36 .............................. TATAGTATTGTAAATTATGAAATGGTTTGCTATACT 7282 30 100.0 35 .............................. AAGAAGGACACGTTGAGAAAATTCCTCGTATCACA 7217 30 100.0 36 .............................. AACAACAAAAAAAGACAATTAGAAATCATGTATGAC 7151 30 100.0 36 .............................. TTTATTGAAGCTGCTCTTTTTGAGGGAACAAAGTTA 7085 30 100.0 36 .............................. ATATATGAGAGGTGAAAACAAACCAAAAAAAATTAT 7019 30 100.0 36 .............................. GGTGTCAGTTCCTTCATTATCGTTGAGGAAGTTCTG 6953 30 100.0 35 .............................. ACAAATAAATATCCTCGTCAACATTCAATATCTTT 6888 30 100.0 35 .............................. AGTTCAAAGGTCGCGTATGTTGATAGAGGTAAAAA 6823 30 100.0 36 .............................. ATATTGAGCATGAAATTGCAGACAAAGAGAGTAGTA 6757 30 100.0 37 .............................. CGGTAAAGTAATCGAACAGTTGCGCGCGATCCGTGTC 6690 30 100.0 34 .............................. CGAGTACTCGCCCAAGTTGTTGTCCTTTCGCTGT 6626 30 100.0 36 .............................. TTTTCCTCCGCCCACGTTTCATAATCGCCGTAAACT 6560 30 100.0 38 .............................. ACAGAAACAACAGCAGATAAATTTAAAAACGCTTTTTC 6492 30 100.0 36 .............................. TCATTATCAAGGGTGTGGTCGATTGTATCAAGCAAG 6426 30 100.0 36 .............................. TCATCTGTCACGTCTTTTACTGTGGAAGAAATAATT 6360 30 100.0 35 .............................. ACTTTCGACAGTAAAAGGAAAGCGGAAGATATTGC 6295 30 100.0 36 .............................. GACATTTGTACCGCTCGTCTCTACGTCAAAGGCTAT 6229 30 100.0 36 .............................. GAGCTAGCGTTAGTCTTGAGTAATCTAGTTTGTGTC 6163 30 100.0 36 .............................. AAGTTGGGGTTTCAGAAATATAGGAAATATACTTTT 6097 30 100.0 35 .............................. TGACGTAGACAACACCATTGACGGTTACCTGATGC 6032 30 100.0 36 .............................. TCTGGAATAAGTCCCATCATTTCTTGTACTAGATAA 5966 30 100.0 39 .............................. CGAGAACACTATTCAATGGCACAACGGACACTTTGAAGA 5897 30 100.0 36 .............................. CCTTGCGCCTTGAACTTTTTACCTTTGTCATCTGTT 5831 30 100.0 34 .............................. GTGTATTGTATGAGTTCGAATGTCCCTTTTTTAA 5767 30 100.0 36 .............................. CCTTGATATGAAGGTTACTGTTATTTTGCCATCACG 5701 30 100.0 36 .............................. TGTAACGCTGGTTCGGGTCTTTCGTATACCAATACG 5635 30 100.0 36 .............................. TCACCTTCGGCGAGTGCACCAATTTGATTGGTCTTT 5569 30 100.0 36 .............................. CACAATGCTTATTGCGTGTCTAACGTATTTGTAATC 5503 30 96.7 36 ....................A......... ATCGTAATCTTTTGATTATCAACAACCTGCACGTGA 5437 30 93.3 0 ........................A...T. | ========== ====== ====== ====== ============================== ======================================= ================== 30 30 99.7 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAAACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTCGCCGGCACGACCAAGTCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGCCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGTGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAAGGGATTAGGATGGTTTTCGAGAAGCAGAAAAAAATAAGTAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGAGTTTAGAGGGTACCT # Right flank : CTCAAAGAAGGAGGGAAACCAAATGATTATGAAAAAGTTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGACGACTACGGAAATACCTACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACATATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGGAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATCTGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAACTCCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCGTAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGCACACTAACCATGAAAAGACCACTCGATACCCAGTCCATAAAAAGGCATACAAATACTAAAATTACGAGAACC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 3747-1283 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTX010000019.1 Listeria booriae strain FSL L7-1547 NODE_19_length_61636_cov_65.153966, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3746 30 100.0 35 .............................. CCTAGAAGAGCGGATAATTATCAGTTAGAACCAAT 3681 30 100.0 36 .............................. GACATCAGTGACAGCTTTACATACTTAGCGAAGCAA 3615 30 100.0 38 .............................. CCAAACCCGTTTTCAAACGGCGACCAGACGCCTTGTTT 3547 30 100.0 34 .............................. GTCCACGGATGAACTAGAAAAGAACATTGCCGAT 3483 30 100.0 37 .............................. CCAAAACCGCAACAAGTACACACGAAGTCGCAAGAAG 3416 30 100.0 35 .............................. CCCGCTAATGGATTTGGCCAAACAACTGTTAGTTG 3351 30 100.0 35 .............................. GCGGTAATACACCTAGCACTCAAAATACAAACAAG 3286 30 100.0 36 .............................. GAGGTTATCAAGACAGATGATCATACATGCGACGCC 3220 30 100.0 38 .............................. CTTTATGAAAGGCGAGAAGCTATGTTGAAGCAATTAAG 3152 30 100.0 35 .............................. TAAGCTGATTCATAAAGTTGCATCATTTCGTCTGC 3087 30 100.0 36 .............................. TAGCTCGCCAGTCTACATCCAAACTCGGAACCGTCA 3021 30 100.0 37 .............................. GTTGTATCAGGGTCACGATTCAGCGCTTTTTGGTTCA 2954 30 100.0 35 .............................. ATTACTTTACCCAGTTCTTCGAGTGATATATTTCG 2889 30 100.0 34 .............................. CCTATTTAGCAGAATAGGTAGTTTTTTCTATTCG 2825 30 100.0 35 .............................. CAAAGAAGGTGACGGAATGATGAAAGATAAACTAC 2760 30 100.0 35 .............................. ATTAGAGAATATGCGAAAGTCGTTAGATTATCAAA 2695 30 100.0 36 .............................. ATGATTTTCGAAGGATTACAGCAACTCGTAATCTTT 2629 30 100.0 35 .............................. CACCTTCCTATCGAAAAAGGACATCTGATAAAAGT 2564 30 100.0 37 .............................. CAAATCAACACAGGCTTGGAACAACGTCAAACACTCA 2497 30 100.0 36 .............................. CGTGTTGAATTTGACGGACTATCAAGACCGTTTTTT 2431 30 100.0 36 .............................. CCTGTACATTTAATTTTATCAAATGATAAAAGTGAA 2365 30 100.0 37 .............................. AACATTGCATCGTGTGCATTGCGAAATTCCAAGCCGA 2298 30 100.0 35 .............................. GAAATTGCGCAACGCCCTAAAAGAAACCAATCGTC 2233 30 100.0 37 .............................. GAAAAAATATTAGAACTGAGTAAGTAAAGCAGAAATC 2166 30 100.0 36 .............................. TTTGTTCTGTTGGGATCATAACCATCACGCATCCAC 2100 30 100.0 36 .............................. CTTGTACAGCTTCTTGCCGTGTTCTTCGGTTAGTTG 2034 30 100.0 34 .............................. TACTGCGTCCCTAGCGTACATTTCAACCAGCCGT 1970 30 100.0 36 .............................. TACCTAGTAAATACGGAAAACACTTGGTGGTTTATT 1904 30 100.0 36 .............................. TTGACCGTCATCTTCTACATCTGCTACAATGATTGC 1838 30 100.0 36 .............................. CTGATTCAAGCGAAAAGATAGATGATAAAGAAAATA 1772 30 100.0 37 .............................. TTGAACATACCTTGAAATTTAACCATCCCTGGTTGTA 1705 30 100.0 36 .............................. TAATTCGCCCCTAATAGTTCATTTTTATAACTTGAA 1639 30 100.0 36 .............................. GCACAAGCTATTGTTCCGCTGGTAACTAAGTTTAGA 1573 30 100.0 36 .............................. AGGTCGCCCGTCGTATTCATGCGAAACTGCATTGCT 1507 30 100.0 36 .............................. GATGGTGCCATTGCGTTGACTGCGAATCAGTCATTT 1441 30 100.0 35 .............................. TTAGAGAGAATACATTTTTTGTGATTGTCGGTTTG 1376 30 100.0 35 .............................. TGGTTTGGAATTCCACCATCTTTTATGAATGCCAT 1311 29 86.7 0 .................A....-.C..G.. | ========== ====== ====== ====== ============================== ====================================== ================== 38 30 99.6 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AACCATACAACCCTTCTATTCTACGCCTTGTGAAGATGGTAATCGACGCAGCGCATAAAGAAGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGCTAGGAATGGGTCTGGATGAGTTCTCTATGAGCGCATCAAGTATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGGAAAGAGGGATGGTGACAAGTGGTGTTTGGAAAAGCGAGGATAAAAATCTGTCGACCGTCGGTAGTGTGGAAATTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGCAAGGGATTGAGCCTATTTTTGGAGTTCGGGTTGTAAGGTTTGG # Right flank : TAGATTGCCCACAGATGCAGTGTTTCTATCCATTTTTACAGAAGCAATTATCATTTAACAGCTTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCCAGTATGGTGCGGAATTTGGTGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACCGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATCGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGGAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //