Array 1 4761088-4762562 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022503.1 Salmonella enterica subsp. enterica serovar Hvittingfoss str. SA20014981 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 4761088 29 100.0 32 ............................. GCGCGGTTCTGCGCCCTGTTTCCAGTTCAGTA 4761149 29 100.0 32 ............................. CGGTAACAGGCACGAATCAGGCGTGTCGGCGT 4761210 29 100.0 32 ............................. CTGACGGTAAAACTACGGTACCGCCGTAGTAA 4761271 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 4761332 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 4761393 29 100.0 32 ............................. TCTGGTCATAACATCGCAGCAAAATCAAAAGA 4761454 29 100.0 73 ............................. CATTAAAAAAAACATTTGCTATAGGTGGCGGGGATAAACCGTGGTTGTTAATGCTGGCGATATTTTTAGCACA 4761556 29 100.0 32 ............................. CAAAAAATTACCCATTGCGAAATCATATTCCC 4761617 29 100.0 33 ............................. TTGAGCACGACGAAATTTTGGTTTGATGCAGCC 4761679 29 100.0 32 ............................. CTCGACAGTGTGTGTAAACCGGCGGGCGCTGG 4761740 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 4761801 29 100.0 32 ............................. GGGCTCATAAGTATTTCACTGACTGACTACGG 4761862 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 4761923 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 4761984 29 100.0 32 ............................. GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 4762045 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 4762106 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 4762167 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 4762228 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 4762289 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 4762350 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 4762411 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 4762472 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 4762533 29 96.6 0 ............T................ | A [4762560] ========== ====== ====== ====== ============================= ========================================================================= ================== 24 29 99.9 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //