Array 1 186271-184373 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBJB01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain inss6 scaffold_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 186270 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 186209 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 186148 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 186087 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 186025 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 185964 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 185903 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 185842 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 185781 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 185720 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 185659 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 185598 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 185537 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 185476 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 185415 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 185354 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 185293 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 185232 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 185171 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 185110 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 185052 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 184991 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 184930 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 184869 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 184808 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 184747 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 184686 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 184625 29 100.0 11 ............................. CGGCCAGCCAT Deletion [184586] 184585 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 184524 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 184463 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 184402 29 93.1 0 A...........T................ | A [184375] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 204169-202553 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBJB01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain inss6 scaffold_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 204168 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 204106 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 204045 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 203984 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 203923 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 203862 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 203801 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 203740 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 203679 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 203618 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 203557 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 203496 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 203435 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 203374 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 203313 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 203252 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 203191 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 203130 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 203068 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 203007 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 202946 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 202885 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 202824 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 202763 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 202702 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 202641 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 202580 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //