Array 1 941281-942466 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041208.1 Salmonella enterica subsp. enterica serovar Newport strain SAP18-8729 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 941281 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 941342 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 941403 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 941464 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 941525 29 96.6 32 ........A.................... TCATGCTTTCGACTAAATACTACCGCGACAAC 941586 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 941647 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 941708 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 941769 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 941830 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 941891 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 941952 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 942013 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 942074 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 942135 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 942196 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 942257 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 942318 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 942379 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 942439 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 959136-960751 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041208.1 Salmonella enterica subsp. enterica serovar Newport strain SAP18-8729 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 959136 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 959197 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 959258 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 959319 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 959380 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 959441 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 959502 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 959563 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 959624 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 959685 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 959746 29 100.0 32 ............................. CCGAATATGGTGATAATGTTGCACCTTCGCTC 959807 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 959868 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 959929 29 100.0 32 ............................. AGGACTGAGGGAATAGGGACCGTAATTGTAAA 959990 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 960051 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 960112 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 960173 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 960234 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 960295 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 960356 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 960417 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 960478 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 960539 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 960600 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 960661 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 960722 29 100.0 0 ............................. | A [960749] ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //