Array 1 253458-254350 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLHN010000002.1 Streptococcus equi subsp. zooepidemicus strain SEZ_14-102 tig00000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 253458 36 100.0 30 .................................... AAATACCGTTGCCGAAGCCATTGCGGCCAA 253524 36 100.0 30 .................................... TAGAAACGCAGTTTCTAAACCTGATATATA 253590 36 100.0 29 .................................... GCCACGCGAATTTTATCGTTGTCTACGTA 253655 36 100.0 30 .................................... TTTGGAATATGCAGTAGAACTAAATGAGCG 253721 36 100.0 30 .................................... TTTCTCCTGTTGACCTTGGTTTAGAAGCAT 253787 36 100.0 30 .................................... ACTTGCATATTTTTGGGTATGAAATGGGTA 253853 36 100.0 30 .................................... TTGCCTCCACTGATGCTCCGACATCAGCCT 253919 36 100.0 30 .................................... ATTGACCCATCTTCGTTTACTGTATAGCTA 253985 36 100.0 30 .................................... TTATCATAATGCCAACGCACGAATGCTAAT 254051 36 100.0 30 .................................... GACTAGAGCTACTTTCCGTATCATGACACA 254117 36 100.0 30 .................................... TGGTGCTTGTGAGTGTTGCTGCTGTATTGA 254183 36 100.0 30 .................................... CGTGGCCCTCTTTTAAGCCCATCCACGCTA 254249 36 100.0 30 .................................... CAAAGGAGCTGTTATTCTAGATCCTTTTAT 254315 36 83.3 0 ..................T......A...TT..T.T | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 98.8 30 GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Left flank : TTACAGGTGTTTAAATACCTCACAAAAAAGAAATTATTAGTTTTTGTTAACAGTGGCTCCTACTTTACTAGAGAAGAATTTGAGCAACTAAAAGAATATGTTGAATTGTCAAATCAAACTGTTCTCTTTTTAGAGCCAAGACCTCTGTATGACTTCCCACAATATATTTTAGATGAAGATTATTTTTTAGTTACACAAAATAAGTTAGAAGGTATTGAACATTAAGGATAGGGTAAGTGTTTATGTTCTCTTAGAAATCAACCGTCCAGTCAGGTAGCGGTTAGTTAAGCTCTCTAAGTAGATGAAAGTTGGATTAATCATGTATCATAGCTGGTAAATTAAAGATTGACGATAACAAAATGGCTTGGGATAGGGGAAACCATTGAGATAATATACTTCTTGAGTTATAATCTTGATAGTTCAAAGATTATTTGCAATTGAAGTTTAGCCACGACAAATAATCTGATAATGACGTCTTATAGCAAAAGATGGTCTACGAG # Right flank : TCCGTAAATGATTAAAAGGTAACAGTTGCAGTAGTAATTGGTCTTCATGCTTGCTATTAAGCAAGTAACGATTGCTAATGATGGGTAATACTACGATAGTGATTGTCATTGTATGGCCTCTTTTCTGCTGGCATAATGGGGACAAATTAAGGGAACTGTAACTTCCCTTTCCCCACCAAAGGGGATTTATGCTTGCGATAGCTTAGGTTGTCGGTCAGGTTAATCAATATTTTCAGGTAAGATATGTTTGATGTAGTGGTTGTTGAGGAAATTACCCTTACTTTTATTTTTCTACCCTACTACTGGCAGAAAATGACCATAGAATGAACTGGTCTGTTTAATCTGTGATTTATCAAACGATTGTCAATCTTTTGGCAATAGCTCGTTTGCTGTTACACCAAAAATGTTATGCAGCATGATTAACTTTTTGATTGGAGCTTTGCGCTGGCCATTTTCTGTCATACTGAGAGTTTGTTTGTTGGTTTCTAGTAGCTCAGCAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 255360-256708 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLHN010000005.1 Streptococcus equi subsp. zooepidemicus strain SEZ_14-102 tig00000019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================== ================== 255360 26 100.0 41 .......................... TTGATGGGGTTGGTTTTGTTGGGGTGTACCAAGTGGTCTCG 255427 26 100.0 39 .......................... GTCTTTGCGCTGTAACTCTGATATTTTATCTTTGTCTCG 255492 26 100.0 40 .......................... ACTAATACAGACTTACAATCTCAAAGTCCACTAGGTCTCG 255558 26 100.0 41 .......................... TGTAATTCGACGAGACCAGGCACCCGAAGTTTATAGTCTCG 255625 26 100.0 40 .......................... TTTTTTAGCAGCTTTACAATAAAGACATGACTTTGTCTCG 255691 26 100.0 39 .......................... GTGGGGGAAATATCCAATTGTTCTAATTGTTCTGTCTCG 255756 26 100.0 39 .......................... CAGTGATAGTCTTGGCGGCCGAGGACCATTGCAGTCTCG 255821 26 100.0 39 .......................... AAAAATTATTAGGCACAAAAGACATTACCCAATGTCTCG 255886 26 100.0 39 .......................... TGCTGACCCAAGCCAAGTGGGACATAATACTGGGTCTCG 255951 26 100.0 41 .......................... TGATGAGCGTGTATCTTCGTTTGCAACACCATCTTGTCTCG 256018 26 100.0 41 .......................... AAAAAATCAACTAGCCACTGGTTTCCTTTACGAACGTCTCG 256085 26 100.0 39 .......................... ATCTTTGTGATCAGTCACTAGTAAGATCGTTAAGTCTCG 256150 26 96.2 39 ...T...................... CAATTTATCAAGAGAGCGCTAGACTAGTTACTCGTCTCG 256215 26 100.0 40 .......................... TGGATTTAACAAGCACGAACGGGTGCACAATCTCGTCTCG 256281 26 100.0 41 .......................... CACATATAGCGGAACAATCGGACGCTATCATGGAGGTCTCG 256348 26 100.0 42 .......................... CCTTGCGGGAGCTTCTTTGGCCTCGTTAAACACTCGGTCTCG 256416 26 100.0 41 .......................... TAGTCAGTCTCCGCTAAGGCAGGAGACAAGCCCAGGTCTCG 256483 26 100.0 39 .......................... ATTTAGCAATCCTCCGTTATTTGCCTAACTTAAGTCTCG 256548 26 100.0 42 .......................... CATATCTCCTTGGGTTATCTGTGCCATCAAGGTTAGGTCTCG 256616 26 88.5 41 ...TT.G................... TTTGGCATGCCTCACATCAGACTCATGTCTAGCATGTCTCG 256683 26 88.5 0 ...TT.G................... | ========== ====== ====== ====== ========================== ========================================== ================== 21 26 98.7 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : ATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACAGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGAGTCACTCATAAAATGCTAGGAGACTCGCGCTAAAATAAGCTAAAAAAATAGAGAAATGAGAGGTTATAGCTAAATATGTTATTGGCTAGCCTATGTCAGTTCTCTATAAACTGTGCTATGCTGCGCAGTCTCG # Right flank : TTTTGCTGCTATGCAAGGAGTGACACTGATTGAAGTCGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGTTTTTTATGGTACTATGTCAAATAGATAAAAATCTCTGTGTCAAGTGTAGTGGGTGACTGATAACTAAGCACGAGAGGAGACGAAGGTCGTCTTCTCTTTTATGATGTTCAAAGCAAGGTAAATACTTTTCTTGAAGTTGTCAACGTTTCTGAATCCAAAAGCATTGCGCTTGATACCTTTGATAAATTTGTTAGTTGCTTCAAGCTTGGCGTTAGAATAAGGCAGTTCAATGGCATTGATGATATAGTCGTTATAGCGTATAAAGGTGTTTAAAGTCGTTTTGAAGGTGTGATTGAGATGAGGCAAAGCATCTTGACTTAACCCAAAGAAGAGCTCTGTCTTCTTTTCTTGCAAGTGAAAAAGAAGTCATTGGTACAG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //