Array 1 81568-80789 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPW010000010.1 Planktothrix sp. FACHB-1375 contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 81567 37 100.0 36 ..................................... ATTGAATTACCGTTATCGTTATTGAGAAATTTTAAA 81494 37 100.0 41 ..................................... ACTGACAAAGATGCGGAAATTGCCAATTTAAAAAGTTTGTT 81416 37 100.0 39 ..................................... TAGAATACCGTGCGAGATTTGTCACCAATATTGGTGTCT 81340 37 100.0 36 ..................................... ACTTGGATCGAAGTCGATGTTCCAAACTGGTTTTAT 81267 37 100.0 40 ..................................... GGATTGAAAGAAATTATCAAAAACTTGTAGCACAAAGGAG 81190 37 100.0 35 ..................................... CAAAGTGAAACTTGTTGACAGCGGGCAAGAACTGA 81118 37 100.0 37 ..................................... AGCAAGGCAGTGCGCTCACAAATGGCATAAAAACTCG 81044 37 100.0 36 ..................................... ACTAAATAAAAGCGATTTCGACACAATGCCGTAGCG 80971 37 100.0 35 ..................................... GAACATATGGAAATTCCCATGCCTACGGAAGGTAG 80899 37 100.0 37 ..................................... CCTCAAAGCCGTATGTCGGACGATCGCGCCTAAAATG 80825 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ========================================= ================== 11 37 99.8 37 GTTACACCGTACCTAAAAGGTGCGGCTCCATTGAAGC # Left flank : CACAACCTTTACATCACTTTTTACCAACTCTTTGTTGAATTTAGAGAAACTTGGGCAGTAGTTGTTCAAGGAGTGCGCCGCAGGCAGTAATAGCACAGTATATTTATCCTTGGTGTGTTGTAGCACACTTTTTGCTCTTCTTGCATTCTTCGAGGGTTTGCGTTTCCTATGTGGCGAGATTCTCAGCCGACATCTCATAGGCTGATGCACCCTCACTAATTTTCTATAGATATTTTCACATCCGGGCGTCTATTGACGCCCACCTACTTACCTATTTATGATAGCGATGTCAGTTAGATTTTCGTAAACCAAAGTGGGGGTAAAAACTCTGGGGAGTTCACGAAAATTGCTAGAACCTTGACAAATCAATAATTACAGCTTTCAGATGACTTTACTTATTGCATATTCTTAGCAGTAAGCACGGCTGGAAATATCTTGAAAATTAGATTGCCGAAAAATCACTTTAAAACCCTTGATTTATTTGGGTTTTGATTGACAGG # Right flank : AACAGAAACGATATCAGCCGGTACAAACAACCCCAAGCCAAAGTGAGCCGCATAGCCAAGCGCGATCGGCCCAGCTTGTAGTTCGGCCAACTCAATTTCTAACCAGTAACCACGATCGGACTCTTTTTTCCCATTACCTTGGTAGCGCCGACGTTGAAACGCTTGCCAGTTATAGCCGCTGAACTTTCTCCCCGCTTCCTCACTCAGGCATCTTGCCTTTACCAAAAGCTTGCCATCATCCCGTTGATAACCCAACCAATCTGCTGGATCGCCCGCACATTGAATCTCAACACATTCATCCAAAGATAGCTCTTGATTCAAATGGTTGAGCAAGTGTTTTAACAAACGCAGCGTTTGATGTTCTGGGCCATCAATTTGGAAAGATGTCCCAGGAATATATTTGGGTTGACCTCGGCGATCGCGTTTTGGATGACGGGGCAGCAGTAGCGGCGTTAGACTTTGCCATCTGCGACTTTTCCCCACCAAATTCGAGCAACCTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACACCGTACCTAAAAGGTGCGGCTCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 129-528 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPW010000221.1 Planktothrix sp. FACHB-1375 contig221, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 129 37 100.0 38 ..................................... ACACCAGTAATCAATTTTTCTATTCGCAAAACAGAAGT 204 37 100.0 32 ..................................... GCAGCGGCTGTCTTGGTAATTTCGTTATCCGG 273 37 100.0 34 ..................................... CCTTTTGTATGTGAGTCGCCAGCAAAAGGTGTTG 344 37 100.0 40 ..................................... AACTTTTCTCTGTAAGCATCATTCATTCTTTTCATCTCGA 421 37 100.0 34 ..................................... AGCAAAATTTTTATGGGGTGCGACAACAAATAAA 492 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ======================================== ================== 6 37 99.5 36 CTTTCAATCAACAGAATCCCGGCAACGGGATTGAAAC # Left flank : TGTCAATTTTTACAATACATTTGTACTATCCGTGGGTAGCGATCGCACTCCTGCAAGTGCCTTAACAAAAGTTCATACAGTGTCGATTACTTTTGTCCGACTACTTAGCTCTTTTTCTCTCTATCGGAC # Right flank : TACAAAATTTTTCCCAGAGTAATAAGCGTGTGCGATCGCGCTTTGATTTAAACAATCTCGTCTGATTGCCTTCCACAAAACTTAGCAATTATCAAAGTAGCCTACTTTAAAAACATCGAAAAATTTATGTGCGGTACAGCTACAAAAATGAACAAAGGTGCAGATGAGCAGAATAATTCCGCCAGACCGTGCGATCGCACAGGGAACGATCTGTGAAAACTGACATATAATAGCAAATACCTTCGTTAAACTCGCTCCCGTATTGCATACTTTATATATTGGCCGTTAGCGGTAGAGGAATGCTGTGGAACTTGCGCTTGAGAGTCTCTGGAGTCAGGTACTGGAACGGTTGCAGATACAATTGAGCCGTCCCACCTTTGAGACTTGGATCAAAACTGCTAACGCCGAGCAATTGGAAAATAACTGTTTGGTAATTCGCACGCCCAATCCGTTCGCTCGCAATTGGCTGCAAAAATACTACATCAAAACTATTGCCGATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAATCAACAGAATCCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 11725-12870 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPW010000024.1 Planktothrix sp. FACHB-1375 contig24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 11725 37 100.0 35 ..................................... GTGGCATTGCCGTGGATGTGATCGATAGGAGCGTA 11797 37 100.0 42 ..................................... GCACAGTAATCGAATGGACGGAAACATAAGATGCCTTTTATG 11876 37 100.0 36 ..................................... AGCAAGAACAGGAAGAGTAGGACTCGATATATTAAA 11949 37 100.0 37 ..................................... AGGGGTAATGTGAAAAAATAGCCCCTCTATACCTTTG 12023 37 100.0 36 ..................................... GCAACCCACATTCAGCAGCCTCCAGTCGAGCTAAGA 12096 37 100.0 36 ..................................... AATCCAGAATCGTTTGGTGACCGAGGAATTTAGCGA 12169 37 100.0 38 ..................................... TTTCTGCCATTTGCATTGTTGTGCCGTGGCTGAGAAGT 12244 37 100.0 36 ..................................... AACAGAGGCGAATGGCTTTCCAAACATCAAATCAGC 12317 37 100.0 34 ..................................... AGTTACTGACATTGCCCCGCTCAAAAATTAAGGT 12388 37 100.0 39 ..................................... AGTTTCTATACCCGGTGCCAACGGCGTTCGCAAGATCGA 12464 37 100.0 37 ..................................... TTAATAATATCCTCGGCTGCCTCACCAATGACGCCAG 12538 37 100.0 37 ..................................... TGTGGTTTGCTTTGGCCATTGTGCGGAGAACGCGCAA 12612 37 100.0 40 ..................................... ATGAATAGGGCTTTTCCAGCATTGGCTAGTCCACCAATAC 12689 37 100.0 35 ..................................... ACCGCATCCATAATTTTACCAACGTTAATCATTGA 12761 37 100.0 36 ..................................... TTTGATTAGATTAATGACAGTTTTCTTGCGAGCGGA 12834 37 91.9 0 ................................C.T.T | ========== ====== ====== ====== ===================================== ========================================== ================== 16 37 99.5 37 GTTGAAACCAACTAAAATCCCTTTCAGGGATTGAAAC # Left flank : AAAACAGATCGGTATCAGTCCTTTTGATACAGAGGATATTTGCCAAAATCATCGATTTTCGATCAATTTAATTTATCTGTGCAGCACTGAGATTGTGTGCAGCCACAGACAAGTTAGTAGCGCTGAATCCTTGACAAATAAATCAAAATGTGTTTATCTAGGTTGGCGATCGAAAAGTCTGCTGCTTCGGCAACATCCAGAATAACTGGCGATGTATTCTGGGTAGGAGCGCGATCGACAATGGGTATCGCTGCGACTGGGTGGGGGTGTTTGAATTGGCAAATCCTCAATTTTGGCTGAAGTCCTCTCTGGCTAAGCGTTTGGCTGACCTTGGTGTGGAAAGGGGTAGTCGCAATCTCTGGAACCATTGCCAGCAAAGGGTTTCAGGAAAAAATTTCGATCCCTACTTTACAAGCCGTTGGCTGAAATGCTATTCTTTATCTCGGTAGTCGCAAACGAACCTTGAAAACTTCATATTATCTGGGTTTGAGGATGTTGCA # Right flank : TCCTATCCGGTAGCATCCGTTGCATAAAAAATCCCTTTCTTATAGCAACCGCCAAGGCGGTTAAGCCAACTCCAACTTTTACCTATGGTTCATAATCCCTTACGGAGTAAGCTTTTCCCTCTTCCCTCTTCCCTAGCCCCTAGCCCCTAGTCCCTAGCCCCTAGCTATATCTGCGTTCATCTGCGTTCATCTGCCTACATCTGCGGTAAAAAATTAACCCCTAATTCCCACAGATAATAACTCCCATGAGTCTTACACTACCGATATAACCGGACACGATATGAAATCCCGCATCGCAAATACAAAATCACTGTTTTTCAGCGAGACGATCGAAACAATGGGGACAGCAAACATCCTCCTGATAATAAGGCGAGTTTTTATCTTCTTCAGAAATGGGATGTCCGCAAGCAGAACACATTTCGTGAGTTCCCAACTCCAGACCCTGACTGAGGGCGACACGCTGGTCAAACACAAAACATTCTCCTTCCCAGAGACTTTCT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAACCAACTAAAATCCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 21021-21210 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPW010000003.1 Planktothrix sp. FACHB-1375 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 21021 36 100.0 40 .................................... ACAAACTCCCAATCTTTAACAAAAACGCAATGATATGGAG 21097 36 97.2 42 ...........T........................ GCTAGTCCAATAGGGGCGATCGCAGCCTCGGTTATGCCAGTG 21175 36 86.1 0 .A.T......A...................GA.... | ========== ====== ====== ====== ==================================== ========================================== ================== 3 36 94.4 42 TCTCAATTAACCTAATCCCCGCAAGGGGACTGAAAC # Left flank : TTCTGGCTACCCAGTCCCTTGGGAATTGGCGCAGTTGCGATCGCTTTGTTGGTAGCTGCTGGCATATTAATAAAGTATGGAGTGGGAAAACCAAAACTCAAAATTCAAAAAGCCTAGTGGCTGGGGCTTAGGGCGTCGGGGCTAGGGATTAGGGAAAATATTAATTATTCAGATCCCTCTCTCCCTCCTCCCTCTCTCTTTTCCTGTTTCCCTCTCCCTATTGGCGATCGACTTTTGACTTTCATAGGGCTTTTCAAAATTCTGCTTTTGTTTTACAATCTCAGTAGCAAACAGATTTTTCGTCAACCTAAGCGGGAGCGAAAACCCCAGGAGGTTCACGAAAATCGCCAGAACCTTGACAAATCAATAAGTTTAGCGTTTTGAATAACGGCAGAAGTGGTGAATGACGTGGAAATGAGAAGCATGAAATGGACTTTTTTTTGCGATTCACGAAAACCCTTCGCCGAGGGCTTGCCCAGTAAAGTTTTCAGTCTGGGCAG # Right flank : CCGACTGGCATCCCGCTGTCAAACAAACATCAAAATTTATCTGCGTATCCCACGAGAAATCTACATATACATCTGCGTTCATCTGCGGTCAAAAAAACCTCCAAAAGGAGAGGTTGACAAAACCAACAAGATTTGTTTTGTGTAGGGGCGAAGCATTCGGGCGACCATTTATTGCACAAAACCCTAGATTTTCTGTCCGAATGCTTCGCCCTGCTGAGGTCTAAATAGAAATGACACTATCTTGCTTTTGCCATTCAGACAGAAAGATTGTTCGTAATTGCGATCAATTGTCGCCTGAATGCTTCGCCTTATATAATACATATTTTGTTCGTTTTGTCAATTAGTCCAGTAAAAGAGGTTAACAAAATAAAAAAGGTGTGTATGTCTATATAAACCTCGGCAGGGCGAAGCATTCGGGTAGAAAAATAGTTGATAATTGCGATCGATTGTCGCCCGAATGCTTCGCCCCTACATAATAAATATTTCGTTCTCAAGGCAAA # Questionable array : NO Score: 3.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTCAATTAACCTAATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCGTACCAAAATCCCCGTAAGGGGACTGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 54682-51984 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPW010000034.1 Planktothrix sp. FACHB-1375 contig34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 54681 37 100.0 36 ..................................... TTAGCAGTGTGCTTCTAGCACAAAGCAAAACGATCT 54608 37 100.0 42 ..................................... AATGCCTATTTCCCTAAAGATAGCTCTTTGGGCTTCAAGTTA 54529 37 100.0 48 ..................................... CTCCAATCTGTTCTTCTCCGATATGTTCCTTGATTTCGTTGCGTAGAT 54444 37 100.0 38 ..................................... CCATATCAAATGTAATTCCATTGCGATTTTCGCGCAGT 54369 37 100.0 33 ..................................... TTGGGACGAATTTATTCTGTTTTCCCCAGATGG 54299 37 100.0 39 ..................................... TCATCAAGGACTGCCCTCTGAATATGGGGGCAAATATTA 54223 37 100.0 33 ..................................... TTCGACTTCTGCTTTCGCAGCACTTTCGCAAGC 54153 37 100.0 32 ..................................... TCGGAACCAATATCATCGGCCTCTTGACCTGG 54084 37 100.0 32 ..................................... TTTCAAGCTTTTCTATTGCGTTAAGTATTTTG 54015 37 100.0 39 ..................................... GAAGACGCAATTTTGTATTCCTTAAAGCAGAATACAGAT 53939 37 100.0 37 ..................................... TAACGATGCCACTGTTTTTCTCGTCGGCATTTTTTAA 53865 37 100.0 38 ..................................... TCGGGTGGCTATCACTGTGGGTTCTGTTTAGAGTTTAT 53790 37 100.0 38 ..................................... TTGAGGTGATAGCATTAACATGAAACCAAAATATCTAT 53715 37 100.0 39 ..................................... CAATTTGTTGGTATCGATACGTCAATTTGTTGGTATCGA 53639 37 100.0 35 ..................................... GTGCAAGCCCCTACACTTGTTCCACCAGCCAAAAT 53567 37 100.0 37 ..................................... GCGTACCTCGCCGCTAAAAAAGGTGTTTCCGCTGAAG 53493 37 100.0 37 ..................................... GGGGAAATCAGAAGAGAATTAGGGATTTCTTTTTTGA 53419 37 100.0 38 ..................................... TTTAGCATGGCTTGTGTCCTTCGTTAGTTATTAGTCAG 53344 37 100.0 35 ..................................... TCCCAACCCAAAAGGAGATTGCTAAAAAAATCAAT 53272 37 100.0 37 ..................................... CAATGGATCGAGAAAGTTAAGATTCATATTACCTCTT 53198 37 100.0 34 ..................................... CGCATCCCCCGAAGTCGCGGCGGCTTACCTTCTT 53127 37 100.0 35 ..................................... TAATTGTTATTTAGTTGATAGCGAGTATCTTGCTT 53055 37 100.0 36 ..................................... TTGGCAAACCGGGAGAAACGCCATCTGCTGTGAGAT 52982 37 100.0 35 ..................................... GGGGAAGGCGAGGGCGGCGGGAAAGAATTGGCGGT 52910 37 100.0 36 ..................................... TCTTTGTAGGGCTTCCAGAAATCGCTACGAGTTGAT 52837 37 100.0 40 ..................................... ACCACTTCGGTGGCCGCGCCCCTATGGGTCTGGGGCTAGC 52760 37 100.0 35 ..................................... ATTCTGCTTGCAAACTCTGCACAAGCGCGGGATCG 52688 37 97.3 38 .................A................... TTAGATAAACAGTGGTATGTTTTAGCACCGAATATCAA 52613 37 100.0 33 ..................................... TTGTAGTTCCTAACAACCATCCACAGGTAGCAC 52543 37 100.0 38 ..................................... ATCAAAATCAATGGGTATTCCCCCCTAGTATGGGGGTC 52468 37 100.0 39 ..................................... CAAATACCTATCACAAAAAAGGGCGAGCATACATTTAGA 52392 37 100.0 37 ..................................... TAACTTAAAACCATATATTCTTCGATTTAAGTTTCCT 52318 37 100.0 38 ..................................... TTGTAGGAAACTATTATTATGTATGACTACCTTTTTAG 52243 37 100.0 40 ..................................... AAGGAAGTTATTAGGTGATATAGCTATCCCCGACTTTGAT 52166 37 100.0 39 ..................................... CAAAAATGCCGACCCGCAAGCTGCGATCGATAAGATCGC 52090 37 100.0 33 ..................................... CTAGCGATCGGAAGCTCCCCGCTCAAAAAAATC 52020 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================ ================== 37 37 99.9 37 GTTTCAATCCCGTTGCCGGGATTCTGTTGATTGAAAG # Left flank : ATAGTTGACGATCGTAAATTATCAATTCAAACGCGAATGCTTCGTCCAAGCAAGCAGAGGCAGAGATGAATATTAGTATTGTTGGCGATCGAGTAAAACTTGAGTTGGAATGGTACGAGCAACTTTGGGCTTTTACTTTAAATAAAATTTGGGAAATTCCGCTGAGTCATATCACCAGCGCGACATCGGCGGAACCGCAAAGTAGTTGGTCGGAAATTCGCGCACCAGGAACCTCTTTGCCAGGAGTAATTAAGGCGGGAACTTATTACAGCCGTAGGGGGAAGGAATTCTGGTATGTCACAAAAGATCGAGATTATTTGACGTTGGAATTACAGGATGAATCCTATAAAAGGATTATCTTGACGATTGATGATAGCGAAGCATGGGTAGCTCGAATTAATCAGAGTAAAATTAGTTAGCTGCTGCGTTCTCATCGTTTGGCTTGTTCGGTTGCATCGGTAGTGTAAGAATTTAGTTATAGCAACGGTTTCCAGCGTATT # Right flank : ACTGGCCCTTGAAACCCAGACAAACAAGGCATTCTGAAGGCACTTTTCGTGAACCTCATTTTTTGCCTCATTTCAGGCTCGCTTATTGCAAATTAATTGCAACTATTGCCTTTAGCCAAACGCTGAAACTATTTAATTGTCAAGGTTCTGGCGTTTTTCGTGAACCTCCCCAGGTTTTGGCTCCCGCTTCGGTTCACGAAAACTATGGTAAACCAATGGCATTTTCTTGTCAAGCGTTTCGCTCTATGGTATTGAAAATCCGATGGATGGGTGTTCGGCTGGTACAGCAGGCTCTTTCGGATTTACGGGGAAAAATGTTTGTCACTGTTACAGTCAATCGTGATGCTGGGTTACGGCACGCTCGGAAAGGGATAGGAAGAGGGAAAGGGAAGAGGGAGAGGGAAGAGGGAAGAGGGGAAATTTTGAATGATTGACTTTTGACTTTTGACTTTTGACTTTTGACTTTTGACTTTTGACTTTTAGATTGCCCGTGCCTAACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATCCCGTTGCCGGGATTCTGTTGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 40459-43857 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPW010000067.1 Planktothrix sp. FACHB-1375 contig67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 40459 37 100.0 36 ..................................... CAGTGCTGCCGAGTTTTGCAGCAGTGTGTTAAAAAC 40532 37 100.0 33 ..................................... TTCAGTAATTGCCCCATGAGTTGAGTGGAGGGC 40602 37 100.0 42 ..................................... CAACGAATCGTTAGTGGATGACGCCGCAGGGGGGCGCACTTT 40681 37 100.0 34 ..................................... AATAGGCCAAGCTGCAACACGCTACTTGATTTGA 40752 37 100.0 34 ..................................... ATAAAGCTAGATTCAGGGCTAGTCAGCCTTCTTC 40823 37 100.0 37 ..................................... CAAGCGAACCTGGGAGGGCAACCATGACACTCCCCAA 40897 37 100.0 43 ..................................... GGGAATTGGGTAGCAACAACCGAACCTGGAAAGTACTACATTG 40977 37 100.0 37 ..................................... AGCGGCATAATACCCCTGAGAACCTATATAAATATTA 41051 37 100.0 35 ..................................... AATATTGTCCCGTGGGGGACTTTTTTGAAGCTAGA 41123 37 100.0 37 ..................................... GTTTACGCTGAAACTTCCCCTAATTGCCAAGTCAGAG 41197 37 100.0 37 ..................................... CAAGGCTATCAAACTCACGGGTTACGAGCCCGTAGTC 41271 37 100.0 35 ..................................... TTGTAATGGTGACTGTGATGAAGAACTTCTAGAAC 41343 37 100.0 38 ..................................... CATACCACCTACAAGCACCAAGCGCAAAGATTCGTCTA 41418 37 100.0 34 ..................................... ATTGGAATATCGCAGGGTGGAGGTTCTCCTGCGG 41489 37 100.0 36 ..................................... CAGATATCTCATCGATGGTTGGTAAACTGAAATCTA 41562 37 100.0 36 ..................................... TCCGAAAACGATAGCGAGTATGCTCGACCCATCTTG 41635 37 100.0 34 ..................................... TTGGGTTTCAGGCGATGAAGATTTTGAGTTAGAA 41706 37 100.0 35 ..................................... TAGCTGCTTGCTGTTGAGAATCGAATCTGGCTTGG 41778 37 100.0 40 ..................................... CTTGCTTGAGGAGTATCTATTACCTGATAGATAGGAATGG 41855 37 100.0 35 ..................................... ATATTCTGAGGAGGGAGATATTTTGTAAATATCAA 41927 37 100.0 36 ..................................... TTTAAATATATATTCAAAAGAATTAGTAGAATTTAG 42000 37 100.0 35 ..................................... CTTACGCTATTGCCCCGAAGCGCCTTGCTTAGTGC 42072 37 100.0 36 ..................................... AAAAACCTAATGTGGCTGCGATAGTCGCCTTGTTGC 42145 37 100.0 35 ..................................... AGCTGGAAGGTTCGCTTTACTCGGAAACCGCTAAC 42217 37 100.0 35 ..................................... CCGAGAAATCGACGGGAATGGTAGACTCCATTAAA 42289 37 100.0 37 ..................................... CATATTTTAGCTTCCCCCGCTTTCAAGTGAAAAGGAA 42363 37 100.0 35 ..................................... CACCTTCTGGACGGCCAAACGCTTTACTATTACGA 42435 37 100.0 35 ..................................... GGCGCATACCTGACGTACATAGCGCAGTTCGAGAA 42507 37 100.0 38 ..................................... ATATCCCTCATGCCCAGTACGCCATCCGAAATGCGGAT 42582 37 100.0 32 ..................................... CATTAGTACTAGCACTTGCTGTAACTGCTGTG 42651 37 100.0 36 ..................................... TCTGAGTCGCAGGTTGAAAACCTTTGTCGCCTTAGT 42724 37 100.0 36 ..................................... CTGTGGCTTACTTTGAGCCTAAATTTCATGAGCCAA 42797 37 100.0 36 ..................................... AAACTTTACTAGAAATATGCTGAATGTTCCCCATAA 42870 37 100.0 38 ..................................... TCTACAAACACGCCCCGACTTGTGCCAGGGCGCTTTTT 42945 37 100.0 37 ..................................... TTACCAGAAATTTATAGAAGACAGAATCCTTTTGTTT 43019 37 100.0 35 ..................................... CCCTTCACAATTTTTAAATCGTACTTTTATTATAG 43091 37 100.0 35 ..................................... CAAGAGAGCGATCGCCTACGATTAGTTCTGCCAAT 43163 37 100.0 34 ..................................... TCCACGGGGCAAAATTGGTATGGGCAGCAGAAGC 43234 37 100.0 35 ..................................... GAGGAGTTTGATGAGATAATTATCCGAATGGTTGA 43306 37 100.0 34 ..................................... TTCCGCAGGTCGCCGTTTTCTGTAGACTTCTTGA 43377 37 100.0 35 ..................................... CCCTATCCTCGCCCTTTAGTTTCTATTTCATCTAT 43449 37 100.0 37 ..................................... TTTTTTTATGAAAAATTTAAGCTGAAAACCGCCTTTG 43523 37 100.0 36 ..................................... AAATCAACCTCGGTTGAATAACCCTAGAAATAAAAA 43596 37 100.0 37 ..................................... AAGAGAATCCACTTCAGTGTGCAATTTCAAAATTCTC 43670 37 100.0 41 ..................................... TCAGGTTCATCAACCCGAACCGCAGCCCGAACCCGAACCGC 43748 37 100.0 36 ..................................... ATGCTGAGTTTTTGGACTTCAAGAGCAGCAGCGCAA 43821 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 47 37 100.0 36 GTGGAAATCAACATTAATCCCTTTCAGGGATTGAAAC # Left flank : ATTCCAGAGGATAGTCGCCGGACAAAGGTGCATTCTATCCTCAAGTCTTACGGACAGTGGATGCAGTTTAGCGTGTTCGAGTGCGATTTGACCGAAACGCAATATGCTAAATTGCGATCGCGCCTAGCCAAAGTGATTAAACCTGAGTCCGACAGCATCCGCTTTTACTTCCTGTGCGGCTGCTGCCAAGGTAAGATCGAACGGATTGGGGGAGAAGCCGTGCGCGATAACTCGATTTTCTTCGCTTAGTTGCGACTACCAGTAGGTGTTTGGTGAGAGGGATGCTGCTTTCGAGGCGGTATCCCTCTTCTGGTAAGGGTTTCCAGCTTTTTGGAGGCAAAAGGGGTAGTCGCGAGCGCTGGAATGCTTGTGGAGAGAGGTTTTCGAGATTTTTTTTTCAGGGGTATTGCCAAACCCCCAGGCTGGAATGGTATATTTATATCTGTCAGTCGCAACCGTACCTTGAAAACTAAATACGATAAGGCTTCCGGGTGGATGCA # Right flank : CTAATAAATGTATATATAAAGAAAAAACTAACAAAAAACCCCTGGACAGGGCGTCAGGGGCTAGCGTTTTAACAGGCATCCACAATCAGAAATACAAGAGCGCAGCGAACTAAGCAAGAAGGTTTTGACCCCATTGGCGCTTGACCCCCTACCCGACAGGAGGGTAAGGGAATCGAAAAGCACGAATCGCGAGACAATCGATCGCACTGCTTAATTGCCCTCACCGAGAGGATAAGCAGATGCCTGACAAGATGAAGAAGACGGCGTGACATCTGTTAAATTGGCACTGAGAACGACTTTACCATCTGGTGCGATCGACCAACCAGTAGCTTCTACCAACTCAGTACTCGGTGTTGCCTGTTGGGTAGTGGGTGAAGAATTTTTGCGACGACCTCCTATCCCTGACATGATAGATCGATCGCGCAAATCCACCCAAACCGCCTCATCGGTAAGCGCATCAGTCGGACTGGGTGGCAAACCACCTCTACCCGTAACATAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGAAATCAACATTAATCCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 18055-16417 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPW010000069.1 Planktothrix sp. FACHB-1375 contig69, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 18054 37 100.0 37 ..................................... TAGAATAGTTTGCTCCGCACTGAAAGAGTCGTCTTCC 17980 37 100.0 35 ..................................... AACGAAAACGTCCTAGAAGATGATATATCGATAGT 17908 37 100.0 37 ..................................... CAACAAGACGCCGCTTAGGAGGTTTGTCGTGAGCAAC 17834 37 100.0 41 ..................................... GGATCGCTTCGTTTGTTTGGATCATAGCTTCGGCATAGTAC 17756 37 100.0 34 ..................................... GGGTAAGGTACTCTACCAAAAGGCACTATTTCTC 17685 37 100.0 34 ..................................... ACTACCAGCAAGATTTGAAAGATAGGATTTACTC 17614 37 100.0 35 ..................................... TTCAGTAGAATCCCTGAAATTAATGGTGAATTTTT 17542 37 100.0 35 ..................................... GATAAGCCCGGAGGATATCTTTCCCGCGCCACGTG 17470 37 100.0 36 ..................................... GAACTTTGCCGCTCTCAATTCTGCCTCTTCTTTAGA 17397 37 100.0 34 ..................................... ATGTTAGCAAGAATAGATTCCTTAGAAAGGGAAA 17326 37 100.0 34 ..................................... TTGAAGAACCTGCGTAAGAAAAAGAACTAAAACC 17255 37 100.0 37 ..................................... TTAGAAAGAGCGACAAAAGGATTATCCCTGTAAGTTT 17181 37 100.0 35 ..................................... CGTGCAAAGTACACATCGCCTGGTAGATAACTTGA 17109 37 100.0 34 ..................................... TTCACCAGGAAGGAAACCTATGACTTTTGAAGAA 17038 37 100.0 35 ..................................... CCAAAAATTCTGGCTTACCTGCTTTTATCCAGCCG 16966 37 100.0 35 ..................................... TCACAAAAGCTACCCAGAAAGGCTGGAAGCTGACC 16894 37 100.0 34 ..................................... AAGTGACATCTCACGACAACCCATGACATCTCAC 16823 37 100.0 40 ..................................... AAGACTAAGTTAGTAAGTCACACACAATAAGAACATATGG 16746 37 100.0 37 ..................................... AAAGAAGTAGGGTAAGTATCTGGCTAATTCTCCCCTG 16672 37 100.0 37 ..................................... GTACCTGGAACAATTGTTTTTTGAGCAGGATCTCCAA 16598 37 100.0 35 ..................................... AAGCTCCGGTTCGGGTTGGCTTTGCAATACCAATG 16526 37 100.0 36 ..................................... GAAAATGCCCCAAATTTTCCATCAGCAGGGGGGTCG 16453 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 23 37 100.0 36 GTTTCAGAAACATCTAATCCCTTTCAGGGATTGAAAC # Left flank : TCCACCGGTCGATAGGCATCAAATATTTGGATGCGCCAGTTGGGATGCTGTTGCTGTAGGTAGTTTTGGGCGGTGATGAGGTTGGCGAGGACGCTTTGACGGAGGTAATATGGCGATCGATCTCCGTAAGGTGCGCCGAGTTTTTCGTAGGGATGGGGAGACTCGACGGCGAATAGCTCTAGGGGAATGGCTACGAGGGGTTCGCCACATTCTACAATAGGAATCTGTTGGTAGGGTTTCATGGGTTGCTTGCGACTATCGGTAGGTGTTTTTTAGGGTAGAGCATTTTTTGGGGCTGGATTGCTTTGCTGGTACTGGTTTGAGTGCGATCGACGCGATCGAGGGGTAGTCGCAAACGCTGTAATCCTTACTACGTCTGGGTTTGAGAGAAAATTTTTCAACGGGTATTTACAAGTGGAAGCTGGAAATGGTACATTTATCTTCGGTAGTCGCAAACGAACCTTGAAAACTAAATACGATAAGGCTTTTGGAGGGCTGCG # Right flank : AACCAATTGCAAAAATTTAAAGCCCGCCAGGGGTTCAAACCCCTGGCTAATAGCGAAAGTCCACTTAAGTGGACTAAAATCTTTTTGCAGTTGCATCGCTCGGAATTGCACAAGCGATGATAAATCTCTGCAAACATAAATAAATTAAAATATTATTGCAGTCGGATTTATCCGACTTTCGCTATTAGCCTCAGACTTGAGTCTGAGGCGGTCTCTCATCCTGATAACCAAGATTAAAACATCAATATTAATGATGACAATTTTTCTTCTCACCATTATCCAAAGTCGGGACAGGATCGTAACCGCCGGGATGGAAGGGATGACAGCGCAAGATGCGCCGAACGGTCATCCAGCTACCGCGCAAGGGGCCAAAACGCTCGATCGCCTGCAAACCGTACTGAGAACAAGTGGGAGTAAAGCGACACGTAGGCGGAAACAAGGGCGAAATAAACATCCGGTAGCCGCGAATTAACCAAATCAGTAAAATTTTCATAGTGCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAACATCTAATCCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 8820-5840 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPW010000089.1 Planktothrix sp. FACHB-1375 contig89, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 8819 37 100.0 33 ..................................... ACTTACACGGGAAACTTGATAGGAAAAATCCCC 8749 37 100.0 37 ..................................... AAAAGCCAAGCATTGCACATTTGGGTAGTCGATGTCT 8675 37 100.0 35 ..................................... CCATTCACGCTTACGCTGGTAGGCGCGTCTTCAGG 8603 37 100.0 37 ..................................... TCGCTGCCACTGCTATTAACTACCTGGTATTTCGGAT 8529 37 100.0 36 ..................................... GCAGGGAGTTCGACACTATTTTGAGCAGGCTAATTT 8456 37 100.0 39 ..................................... ATTATGGGGGAATTTAAAGCTAATTTATCCCATATCCAC 8380 37 100.0 38 ..................................... AAATCGCTGGCGCTGCCGGACGAGGTAGCCGGAGTGTA 8305 37 100.0 37 ..................................... TATTCCGATCCTCGCCGGGGGATTGTAGCGGAGGCAA 8231 37 100.0 34 ..................................... CTCAAAAGCTACTCTGTCTGGTCTGTTCCAAAGG 8160 37 100.0 37 ..................................... TTCGCGCTGGGGATGTTTTCCCTCAAAATGAGGAAGA 8086 37 100.0 35 ..................................... ATCCAGGAAGATGGCTCACAGTTGAGCGCACAGGC 8014 37 100.0 34 ..................................... ACGACAGAACCATTTAGCGGACGCATTGGACTTG 7943 37 100.0 40 ..................................... ATAGCTGTTCTAACTGACTAGCTACGGACTCGCTATTAGC 7866 37 100.0 35 ..................................... CCTGATAAGGAAGATTGGAGGTTAGGACATCTAAG 7794 37 100.0 35 ..................................... TTGTAAGAATATTTCGGGAAAATATCGGGAAAATA 7722 37 100.0 39 ..................................... GCATTATCAGCCAAAATTACTTCTGCAACTTTTCTTCCA 7646 37 100.0 36 ..................................... ACGTATTCTCCAGAGAAACCAACCGACTATTTAATA 7573 37 100.0 39 ..................................... GCTTTATGAATGCTTTCCTTCTTTATTTCTCGAAGAAAA 7497 37 100.0 40 ..................................... ATTATTTTTACTAGGGATTTTAGAGCGCAGGAGGGATTTA 7420 37 100.0 40 ..................................... ATATTTCTTGGGTCGCGCTTTTGAGAGGCTTCTTGATAAG 7343 37 100.0 37 ..................................... AGGTAGGCAAATTTGCCTCCAGTTACGCCGCCAGAAA 7269 37 100.0 33 ..................................... AAATTTATTCCCCTTCCCTCTAGGAGTACTTAA 7199 37 100.0 38 ..................................... ACGGCTACCAGTTTCATCTCGCAAGAAATCATCCCGGT 7124 37 100.0 35 ..................................... CTGCAATTGAATCAAGATATGCACCTAATTGAGAA 7052 37 100.0 35 ..................................... AATTTATCTACTTCTTTTTCAGAGCTATTTTTCTT 6980 37 100.0 33 ..................................... CTATTATCCGATGCAATTCATAGTTTGTTAGCA 6910 37 100.0 37 ..................................... ATCAATTATTACTACTCCGAATCGTGTGCCGTATCCG 6836 37 100.0 38 ..................................... ACTTATTTCTACAATTACTCCGGGAACTATTGCTAAAC 6761 37 100.0 36 ..................................... TTAGGCAACTCTCCGGTTGCCCGGAGAGTGCTTTTT 6688 37 100.0 35 ..................................... GAGCGGCCAGTCGGCAACTATGGCAATTTCTCGGT 6616 37 100.0 38 ..................................... TGAAATTACAGCTTGTTTACCACGAAAAATCTGTGGAA 6541 37 100.0 37 ..................................... CGCGCAGGACGGCTGCTGAACTAGAAGAGATGGCTAG 6467 37 100.0 37 ..................................... ATTTAAAGCTAATTTATCCCATATCCATGACCGAAAT 6393 37 100.0 38 ..................................... CTGCAAAACCAGGCAACTCTATATGTGGAGTTTCTATG 6318 37 100.0 38 ..................................... CCCTAAAGTTGGTAAATTGTCGTGGTCGCCCTCTTTAC 6243 37 100.0 37 ..................................... CCGCCAAATCGCTCAGAGACCCCAATGCCGACTGTGG 6169 37 100.0 35 ..................................... TAAAGCCAGAAAAACTTCTGTGCTATATATTCAGA 6097 37 100.0 38 ..................................... CTGTTTTGTTTGCTTCAAATTTAAACCGTATTTTTTGG 6022 37 100.0 36 ..................................... TCTGTTGCCTCTTTGCGACCAAAAGGGATTTGATAG 5949 37 100.0 36 ..................................... TAATCGAACTATCGTCACGGAATACTGAGATTCCAA 5876 37 86.5 0 .....................AT...........CGA | ========== ====== ====== ====== ===================================== ======================================== ================== 41 37 99.7 37 CTTTCAATTAACAGAATCCCGGCAACGGGATTGAAAC # Left flank : TGATTAAGCCTGCGGAAGATTCGGTGCGAATTTACGTTTTGGATGCGGGATCGCTGAAAAGGACGATCGCATACGGTTCCGAGAAGCCACGACAGGAAAGTGCGATCGTACTTTAGTATTCCACAAAATTCGATCGCTCACAAAGCCCCTAACCTCTGCCAATCCCGGTTTCTCCATACCTCCGTCACCTGAAAACCCTGTCAATCATATCCACCTTCACCCGGTTTCTCCCCTGGAACCGGGTTTTAGTATCATAAGGAGTACCCCTTGACAAGAAAATGCCGTTCGTTTACTATAGTTTTCGTGAACCGAAGCGGGAGCCAAAACCTGGGGGGGTTCACGAAAAACGCCAGAACCTTGACAATTAAATAGTTTCAGCGTTTGGCCAAGTGTAATTGTTGCGAATTAGTTTCAATAACGAAGGCTGAAATGAGGTTAAAAATGAGGTTCACGAAAAATGGCTTCAGAATGGCCTCTCTGTCTTGGTTTTCGAGGGCAGA # Right flank : TCGGCGCGATCAAGCTAAATTATCGCGATATTGCTTATCTCGCTTCCCCGGTATCAACACATTTCCATATTCATCGCTCACTCCAGCTTTGGCAACCCCATGCACCGCAATTTTGCCTTTGCATATTGTGGCGCTATACTGTTCGTGGTGATGACCGTGAAATACTTTTTTGACTCCCAGCGCTTCCGCCAACTCGTCTAATTCCCTGAAACCATAGCGATGGCAAGAAGGAGCCTCATGAGTTACCAGTATATCGGCTCGCTTCTCCCAAAGTGCCTCGTACTCTTGCCAAAATATGCTGGCATGATGTTTGCGCGGAATATCGCCGCGCCAGCGTTCCTCTTTTCGGCAATAATGTAATAAGTCTTTGCGACTGCGAAATCTGGGTTTGATAGGCGGTCTCCAAATCTTTTCGCGGAATATGCCACCCAATCCGGCTACGCGCTTGCCATCAATCTCGACGACGCGGTTGTGCAGGTTGCGATCGCCCAATTTCGACC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAATTAACAGAATCCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 100754-98731 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPW010000014.1 Planktothrix sp. FACHB-1375 contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 100753 37 100.0 40 ..................................... ATGCCAATGCAAATAAACCCGCGATCGCTGTAATATTTCA 100676 37 100.0 36 ..................................... CCCTAAGCACTTCTTCGGCAACGCGCAGCCCGTCGC 100603 37 100.0 39 ..................................... TCTTCCTTGCTCCAAGCCAAGGACTTCATCGATCCGTGC 100527 37 100.0 37 ..................................... TCAACAATATCTCGCGATACCATCATAGCTGTCTGCA 100453 37 100.0 34 ..................................... TTCCAATTACAGCAGGGATAACTTTCCCCAATCC 100382 37 100.0 33 ..................................... ATTTGATTTAATCTCCAATTGCTCAATCAAATC 100312 37 100.0 36 ..................................... CCTGGTAGCGCCGGTTGCATTGTATTAAAAAACAAA 100239 37 100.0 41 ..................................... GCGGAAAATCGCTCTCTTTCTTTGGCTAATGCTTCATCCTT 100161 37 100.0 37 ..................................... TTATCGCCCTTAATTTCACAATCATCAGATTCTTAAT 100087 37 100.0 36 ..................................... GATTTATTCAGATAATAAACTTTTTCGCCTGGGGTG 100014 37 100.0 37 ..................................... ACTAGACAAGGCTGGCGGGCAAGGCAAGCTGGCGCAA 99940 37 100.0 41 ..................................... CTGCCAATCAGCCAAACAACATAGGCGATTTAAAAGATTTG 99862 37 100.0 34 ..................................... GTGTGATAGTAGCAGTATCCTCATCTCTGAGCCA 99791 37 100.0 35 ..................................... GGATTCGCGATTCGCTGCGATCACGCCAAAAAACT 99719 37 100.0 36 ..................................... TGACAACCACAAAACTTTGCTTGGGAGAGCTTTATC 99646 37 100.0 36 ..................................... CCTTTCCAGAGGAAAAGCTTCCAGGAACAAAGCCAA 99573 37 100.0 38 ..................................... CAGCCCAGTTGTATTTGGGGCGGGGTTGGCAGGGCGAG 99498 37 100.0 36 ..................................... AATCCAGATAAGCCCAGTTATTGGGGTTCTGAGTGG 99425 37 100.0 36 ..................................... ATTTCCAAAGCAGATTCGAGGGGGAGGTAGGTTTGA 99352 37 100.0 36 ..................................... AAAGGCGTAGAGTCTGCCAAATTCTATGAGATAAAT 99279 37 100.0 35 ..................................... ATTCCCATCAACTCTTCTCCAGGGAATATGAACTT 99207 37 100.0 37 ..................................... TGGATCGGAGGGGTCTTTAGTCGCGGCCATTAAATTC 99133 37 100.0 38 ..................................... ATATGATTCGATTTTACATATTAAAGAGTCCATTGTCT 99058 37 100.0 37 ..................................... GTTTAACTAACTGATCGTAGTTGTTAACGGGGGGGAT 98984 37 100.0 34 ..................................... CGGCCTCTTTGAATTTCCCTTATGCCACCTCGCG 98913 37 100.0 37 ..................................... TTTGATTTCCTCAAGCAGAGCTTCGATTCGATCGAGG 98839 37 100.0 35 ..................................... AACCCGCCAGCAGAAAAGATTTCCATCCTGCTAGA 98767 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 28 37 100.0 37 CTTTCAATTAACAGAATCCCGGCAACGGGATTGAAAC # Left flank : GGAGAGCGGGAGAGTGGGAGAGCGGGGGAGCGGGAGAGCGGGAGAGTGGGGGAGTGGGGAAAAAAGAATGAAACTGGTGGGTTATTTCTGTTGTGCTGTACTAGCCGAACGCCCATCCATCAAATTTTGCATACCATAGAGCGAAACGCTTGACAAGAAAATGCCATTCGTTTACTATAGTTTTCGTGAACCGAAGCGGGAGCCAAAACCTGGGGGGGTTCACGAAAAACGCCAGAACCTTGACAATTAAATACTTTCAGCGTTTGGCCAAGTGCAATTGTTGCGAATAAGTTTCAACAACGAAGGCTGAAATGAGGTTAAAAATGAGGTTCACGAAAAGTGCCTTCAGAATGGCCTCTCTGTCTTGGTTTTCGAGGGCAG # Right flank : AATTAGTGATTTCTGCACCCGTCTATCGGGAATCATCGTTTCCATTGCTGCAAAATGTACTCGTAGAAGCGTTCCGTATCGACTTTTTCCATCGCCTTAATTAAGCGTCCACCCGGCTCAACTTTAGTGCGACCCTGGCTGAGTCCACTGGTGACAATAACTGTTTCCCATTCGCGCAGTTGGTAAAACTCAGGATGTGCCAAATAAGCTGTCGCCAAAACATCCCAAAAATAAAAATCCTGGGGAATAACTAGCGCGTAACATTGTCCTGCTAAATCGGAAAGCGGATAGCGACGCTGTTTGCCAATTCGTTGCACAAATGCCGATGTTACTGGCACATTGTTGGTAACATCTAAAGAGCAAAGTACGATCGGAATGTTCGTTTGCCAAACTCTCTCTACAGCTATGGGGTCCCAGTAAGCGTTCCATTCCGCCGAACCGTCTTGTCCCGCTTCCAAAGAACGCTCTACATTACCGGGAACGTTAAGTGCGCCTCCCAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAATTAACAGAATCCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 5532-4558 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPW010000178.1 Planktothrix sp. FACHB-1375 contig178, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 5531 37 100.0 34 ..................................... GTCGCGATTCGAGACAGTATGAGCCAAGCAACAA 5460 37 100.0 34 ..................................... GTTGTCAGGGAATTGATTAAATTAGAATACTCTG 5389 37 100.0 35 ..................................... CTGTAGAAATCCCGGTTCGAGCGGCAGAACCCATG 5317 37 100.0 35 ..................................... CGCCTCGTATGGGAATGCAAATTCCGCATCATCGC 5245 37 100.0 35 ..................................... GCTATTTACTGATTCGCTTCCCCACCAATCCATAT 5173 37 100.0 38 ..................................... GAATACTACAAAGCAATCTCCCTTGTGATATCGAAGAA 5098 37 100.0 34 ..................................... GCAATGTATGCAATTCATAAAAACTTCGCTATTT 5027 37 100.0 39 ..................................... GTCGCCGGATTCAACGCTGTGATGGGTGCAGCCAAGATT 4951 37 100.0 31 ..................................... TAAGGCTTCTACGGTTCGTTTTCCCCAGTCG 4883 37 100.0 32 ..................................... AAGCTCTGACGAAACAGTCACAAATTCAGCAG 4814 37 100.0 35 ..................................... TCTTTATATTCTATAATTAATTTGCAAATCTCTTG 4742 37 100.0 34 ..................................... TTTAGCTTGTGAAATCTCTCGCCTGGTTTGCAAA 4671 37 100.0 40 ..................................... GTGCTTCATCCTCAATGACTGGAATTAACAAATCTTTGAC 4594 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ======================================== ================== 14 37 99.8 35 ATTTCAAACCACCAAAATCCCTTTCAGGGATTGAAAC # Left flank : TCAAATCTTTACTCTGATACAGCAAAATCGGTTGATTTTTTTCATAAGTCTTTATAAAATTTTATTTCGCGGGAGGGTCTAGGGCGTCGGGAAGAAGGAAGAGGGAAGAGGGAAAAATTTCTTACTTTTGACTTTTGACTTTTGACTTTTAGCGCCCCCACTCCTCTCGGTTAAGCTGGACAGTCCTGATGTTTTCGGGGTACGATCGCGATCGATCCTCGGCATTCTCTGCTCTGGCCAAGCTGTATCGCTGCGACTACCTGGGGGTGTTTGAGTTGGCAATGTCTGAATTTTGGCTGAAATCTTTGCTGGCTAAGGTTTTGACGGTTTTGGGTGCTAAAGGTGGTAGTCGCGGTCTCTGGAAGCCTTGTCACTACTGGCTTTTACGAAAAATTTTCGAGACCTACTTTACAAGCCGGTTCCTGAAATGGTATTCTTTATCTTGTCAGTCGCAAACGAACCTTGAAAACTTCATACTGTCTGGGTTTGAGGATGTTGCC # Right flank : ATTCACACAGAGACAAAGAAGATTTTCGTTGCAGAATCATTTCAAACCACTAATATCATGTCCGGTGCATCGGTAATGTCAGACTGATGCTCAAGATTATCTGTGAGAATCTGGGGTTAAATTTTTACCGCAGATGAAGAGAGATGAACGCAGATAAACGCAGATAAAGGCAAATAGAAAGGCATTTTTTGGCAATCGATGCTACGGGATATGAGATGAAACAAACAGAAAGATACCAAAAAAAAGAGGGAAAAGAGCATTTCCCTTTTCCCTCTGTCACTACCCAATACCAAAAACAAGCTATTCTTTATCCAAACGCAAAACAGCCATAAAAGCTTCTTGGGGTACATCTACAGTACCGATCGCTTTCATGCGCTTTTTACCTTTGGCTTGTTTTTGCAACAGTTTCTTCTTCCGCGAAATGTCGCCGCCGTAGCATTTTGCCAACACATCTTTTCGCAATGCGGGGATATGTTCGCTGGCAATAATTTTACTGCCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAAACCACCAAAATCCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 25413-25593 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPW010000107.1 Planktothrix sp. FACHB-1375 contig107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================== ================== 25413 34 97.1 39 ....T............................. AAGAGCAGCTTTTGGTATGTTCAAAATGATGATTTTGCG 25486 34 100.0 40 .................................. AAGTTCTTATCGATTCCGCCGATGAGGAGGATCTGGAGAA 25560 34 94.1 0 ..............................CG.. | ========== ====== ====== ====== ================================== ======================================== ================== 3 34 97.1 40 GTTTCAGTCCCCTTGCGGGGATGCGGTTAATTGA # Left flank : TGGAGATGAGTTGGCCGTTATGTCCGGCGGGTATGGTAGGCTGGTGCATATGCAGGGCTATGGCAAAGGCTGCTTGCACTTCACTTAACTTGATGTTTGTTGTGGGTAAAAATACTGGTTCGTTTTGTTGAGTTACTGACTGAATTTCTTTTTCCCACCCGCATATGTTGGGCAATCCGTCAATTATTTCGGGTAATTGGGGGAGGGTAGTAGGTTGTAATGTTGTAGGCATTTGTGTGAGGGATTTTTATAGGAAACATATTGAGTTTGACACAATTAATGCCAAGTCAAAAATCAAAAGTCAAAAGTGAAAAGCAGATAGAGACCTCGGCAGGGCGAAGCATTCGGACAGAAAAATCTTGAATTTGAGTTATGAATCGTCGCCCGAATGCTTCGCCCCTACATAATACATATTTCGTTCTTTCTGTCAATTTTTTTTACTGGACTGGCGTTCTAGCGACGCTACGGACACCATATCACCGTTTGATGGTAGCAAAAAA # Right flank : ATGCGATCGCAGAATAAGCTGTCGGTTCTTGCGGGTCGATCGGATAAAATCTTAGTTTTTGTTACCAATTTTACGGATGGTGCGTTAGGCACGGCAATTTAATTATTGGTTGCCATACTCAATTTCTCGCCCGTGCCTAAAACACCCTACTGTTAAATAATATTTTGGCAAATATTCTTTGATAATTTCCGATATTCTCGACTTTTTTACTTTTTCCTTTTACACTAAAAAAGTAGAATGATTTTGGTAGGGGCATCTGTAGGTCGTGTTTGTACAAATACAACTTTTGGTATGTTAGAAGCTTTTGATAGTCCGTCTGAGGCGGCATACACAAAAACTGATAAAACTTACTTTCGTAAAAAAATTCCAAACCTAATCGGTATACTAGCACAGCTATTCAAAAGCCGCAAAAGTACCGTGCCTAACTCCCCTATGGGTAGTCCTAATGCAGGGTCATCCTCGATGAAAACGGCACCTCTACCGAGTAATGAAAGCGATCG # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCCTTGCGGGGATGCGGTTAATTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //