Array 1 51698-53225 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTUT01000042.1 Pseudomonas aeruginosa strain AZPAE14841 AZPAE14841_contig_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 51698 28 100.0 32 ............................ AGCATGTAAGTCCAGAACTTGTCGATCTTCTT 51758 28 100.0 32 ............................ TGACTGAGGGCAAGACTTGGAGCCTCCACGAC 51818 28 100.0 32 ............................ ATGCGGACCGATGGTGTCGGCAAAGACCAGCT 51878 28 100.0 32 ............................ CCCGATTCCACCTCCGCAACGAGACCGACCGT 51938 28 100.0 32 ............................ AGAAGGCCTGACCGAGCAGTTAACCCCCATAT 51998 28 100.0 32 ............................ AAGGGAAGTTCTGCCGAAGCATGTTGCTCAGG 52058 28 100.0 32 ............................ TCTTGGGAAGTGATCACGCGGAGCACGCGCTC 52118 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 52178 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 52238 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 52298 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 52358 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 52418 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 52478 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 52538 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 52598 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 52658 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 52718 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 52778 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 52838 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 52898 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 52958 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 53018 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 53078 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 53138 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 53198 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 26 28 98.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 63698-61750 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTUT01000042.1 Pseudomonas aeruginosa strain AZPAE14841 AZPAE14841_contig_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 63697 28 100.0 32 ............................ ACATTGACGCCAAGCAGATCCACGACTTCGTG 63637 28 100.0 32 ............................ ATCGAGGACATCAAGGCACTGAAGGCCAAGTT 63577 28 100.0 32 ............................ TCTCCGCCGTGGATGCCAGCAAGGTCGAGATA 63517 28 100.0 32 ............................ TAGTTGCGCAGGTTGACCGGACGCTGCAAGAC 63457 28 100.0 32 ............................ GTAAAACCCTGCTGGTCGAGAGAACTGCCAGC 63397 28 100.0 32 ............................ TTCGTACTCCGGCGTCAGAGCGATTCGGTTGG 63337 28 100.0 32 ............................ TGATCGACAGGGTGATGGACCACATTGCGCCG 63277 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 63217 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 63157 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 63097 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 63037 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 62977 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 62917 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 62857 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 62797 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 62737 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 62677 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 62617 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 62557 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 62497 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 62437 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 62377 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 62317 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 62257 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 62197 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 62137 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 62077 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 62017 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 61957 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 61897 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 61837 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 61777 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 33 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //