Array 1 122029-123947 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHOV010000001.1 Aerococcus urinae isolate Au-12-B98, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 122029 29 100.0 32 ............................. TCTCAACTCAAAAGTTAGGCGAAAGAATTAAC 122090 29 96.6 33 ............................A CGGCTATACCCAAAGGGATATAGCTAATATTGT 122152 29 100.0 32 ............................. ATCACTACCATTGAAGGCAATACTGGGAATCC 122213 29 100.0 32 ............................. CAAACACGATCAAGCTAATAAATGTTTTCATG 122274 29 100.0 32 ............................. AGTTACATTTCTAACACCACCAGCAAACACTT 122335 29 100.0 32 ............................. TATAAAGAGATCGCTTTTGAAATGGATCAAAC 122396 29 96.6 32 ............................C ACTCACCTCCTTCCTTTAAGCGAAAGAGCGGA 122457 29 100.0 32 ............................. GCATCAAAGACAAACCGTTACCTAGTTCGTTT 122518 29 96.6 32 ............................C AGTTAAGTCATGGGAGCGGTCAACAGGCTCAA 122579 29 100.0 32 ............................. CATCACCCCTTAGCTGATCTCACAAGAGCGAT 122640 29 96.6 32 ............................C AAAGAATTAGGAGGATAAAAACATGCCAGAAA 122701 29 96.6 32 ............................C TATGAAGTTGTAAGATGAGTTCTTCGTCTACC 122762 29 100.0 32 ............................. CCTTATAGTTACCTGCACAGATTTGATACTTA 122823 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 122884 29 96.6 32 ............................C AAAATAAGAAGTTTGAGAAAACAAAGAGGTTG 122945 29 96.6 32 ............................C GTGTTAAGATAAAAGTAAGTTAAGGGAAAGCA 123006 29 100.0 32 ............................. TGGTTTGTCCTAGTATGTAGTCGATGCTTACC 123067 29 100.0 32 ............................. ACAAGCTATAACTATCATCACTCATAATATAT 123128 29 100.0 32 ............................. TCGAAACTAGGCGCTTTGCCTAGTCTAGGGAA 123189 29 96.6 32 ............................C CAATTGGTCTATGTTTAATTTCATTTCAATTT 123250 29 100.0 32 ............................. GTCGTAAGCGATCAAGCTAATAAATGTTTTCA 123311 29 100.0 32 ............................. ACCCTGACGATCGTTTATACGATATAGATGAA 123372 29 100.0 32 ............................. GGGAGTCTGAAACTCTATACCTTAAAAAGACA 123433 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 123494 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 123555 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 123615 29 96.6 32 .C........................... AAAATCAGTTATCGAGAAGCCCAACAGATTCT 123676 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 123737 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 123798 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 123858 29 93.1 32 .C..........................C AGTGGAATAAGTCATTCTGTCACCAGCTAAAC 123919 28 75.9 0 ......-....C.......T.T.A...TG | A [123937] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.5 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : GCAAATTGCTATGTGCTTTCAAGCGTATCGAAGCGAGGATTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACACGATCTCTGTGTTTACTGGAAGGTTGGCCGCGGGAATCTGATCAAATTACAAATTCACCGAATTATTGAAGCTGAATATGACTTTGGTCAACGGGACAATGCCTTGTTGTGTCCACATTGTCAGGAACAACTGGGTTCCCTTAGTGAACATAAGGGACGGCCTTGTTATTTCTTGCATCGGGGCCGAGTACAGACTAAACGTTTGCAGCATTATAAATGCTAGCAAAAGCCCTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGAAATTGGGCAGGTTCGGAATTACAAAGCTTGATTTGATAGGGATCTTTTAGT # Right flank : GAAAGGAAGTTAGCTATGTATTTATACTATGCAATCTTTACTCCATCAGAAGACAAATATGCTATTGAATTTCCAGATTTAGATGACGCTTACTCTTTCGGTGAAGATATGAACGATGCCCTCTATATGGCTAAGGATCTTCTTGAAGGATGGTTAATTGTAGCCAAAAAAGAAGGCGATTCAATCCCCAAAGCATCGTCTCCTGATGACTTGAAAATTTCTGAAGATGCATTACTGGTTCCTATTAAAGTGGATCTTGAACTTAGCTAATTGAAACATAGTCAACAATTGCTCGAGAAAACTTTAAACACTTTATGATATTTAAAGAAACTTAGTCTAGAGGCAGGGGCTTTTCGCTCATGAAGAGGTCCCCCCTTAGTCTGGTGCTTTATTGGTAAGCGTAATATATGATAATAGAAAGTAGGAGACTCGCTGTGACGCAAGAAAAGAAACGCCCTCGTGGCCGTCCAGCAACAGGGCGAAAGCGCGATAAAACTTTG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 142898-143656 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHOV010000001.1 Aerococcus urinae isolate Au-12-B98, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 142898 29 96.6 32 ............................C GAAATCTGGGAAAGTATCAAGACGTACTTTGC 142959 29 100.0 32 ............................. GGCATGACTATCGGAGGCGAGTCTATCTTTAC 143020 29 100.0 32 ............................. AAAATAATCGTCCCACAAGTGGTGGACACATG 143081 29 100.0 32 ............................. GTGTCTAGTAATCCCATAATTTAATCTTCTCC 143142 29 96.6 32 ............................C AAGCTAACGTAGGGCTAACCTACAAGGTTGAT 143203 29 96.6 32 ............................C GACAACTTGATCTCCAACTCAATGGGATCATA 143264 29 96.6 33 ............................C CTAAGTTTTAAGCCATTCGAGGGCAAAATAAAA 143326 29 100.0 32 ............................. TCTTGCTGCCTCGTTAACTTGTTTTTCTGCCG 143387 29 100.0 32 ............................. ATACTTTTGGCAAAGACAAGATTAAAGCAGTA 143448 29 100.0 32 ............................. GGTACGAATAACTCCATGATTATCCACCCGGG 143509 29 96.6 32 ............................C GCTGACCTGGAATGACTTCATCCCCGCACTAA 143570 28 93.1 32 ......................-A..... GTTTGATCTAGCAACATCTTTGCCTAATCCAA 143630 27 86.2 0 .................--.......TT. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 97.1 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : CTGAAAGATTCTATTATAGAAATTGCAGCACTTACGATTAAAAATGGAGAAATAGTTAAGGAATTTGAATGTCTTATAAATTATGAGGGAAAATTGCCTCTTGAAATTACTTCATTAACAGGTATTGATGATCAACTTTTGAAAAAAGAAGGTCAGAAACTAGAAAATGTTTTGAAAGAGTTCAAAGCATTTGTTGGTGAGGTAGATCTTGTTGGCTATAATATTTCCTTTGATATTAAATTTATTAATTATCATCTAAAAAAATTAAACTTACCTAAATTAAATAACAAAAGTATCGATTTAATGAGTTTTGTTAAAAAGGAAAAATTATTTTTGCCTAATTATAAATTAGAATCAGCCCTAACGGCCTACGGGATTAACGAAGAAGTTCCTCATAGAGCTTTAGCTGATGTGCATTTGATTTATGGGTTAGCGCTAAAAGTAAATAAATTTTTAAAATTTATGAATAGACAGTCGCGTAGTTAAAGGGATCTTTTAGT # Right flank : TGTTTAATTGTTATAAGATTATTTTTATAATCATTCTTCCATCTTCTAATTTTGGACAGAATAAAAGCACCTCACCTTCGATTGGCTAGTGCTTATTAGCATATTGGTTCTACTTTAGGTAAATTAATAAACTCTTTATAAGCTTCAACTACTTCACTTGGAGCACTTGGGCTAAGTCTTCTCTTGTCTTTAGAATCAGAAAAATCAAAATAAATATAATCTTCTATGATTTTATATAATTTTTCTTCTTTTTCAATTAAATTCATTTTTTACTCCTTGATAATAGCTATTTTAAAATCAAAGTTTGAAAGTGCACCAATAAGTGATACTTCAGCAAAAATTATACTTTCTTTCTTATTAATCGATTTCATTCCCAGATATTTACTAATGCCTTTAGTTAAATTATATCCGTCGTTATTTAACATATCAACGATTGCATCAGCATTTTCAACAAAATCGCTATAAAATAGATGTCTCGATATCGGATTACTAATACACTT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //