Array 1 7275-4659 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFWZ01000006.1 Escherichia coli strain NGE-020 NODE_6_length_163637_cov_15.8166, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7274 28 100.0 32 ............................ ATCGATATCGAAGCAACGGATGTCGAAACACG 7214 28 100.0 32 ............................ TCTTGTCTCCCTTGGCCGCAGAAAGGAGACGG 7154 28 100.0 33 ............................ TCAGAATACGCATATGCGCACCTTAGTGCGCAT 7093 28 100.0 32 ............................ GCAGTCGTTAGACATCTGGCACTTGTCGCAGA 7033 28 100.0 32 ............................ GCGGGCAACATGCCATGAACCGGGCGCACGCT 6973 28 100.0 32 ............................ TTAAGCTCAGGCTTATATGCCACGTACTCAGC 6913 28 100.0 32 ............................ CAGCTCGTGACCGTCGAATCTGCTGTCGTGCT 6853 28 100.0 32 ............................ AGAGATATGTTGATAACAAAGTCGGGGTTTGT 6793 28 100.0 32 ............................ AGCGTTTCTGTCGCACGAAATCCGAATATAAG 6733 28 100.0 32 ............................ AGGGGAGTATTTTCTCCCACAACACGTTTTAG 6673 28 100.0 32 ............................ GATGGTCGCGACTGCTTCGACTGATACACGTT 6613 28 100.0 32 ............................ AGCGCGATCGCCTGCTGACTGCGCTGGAAAAG 6553 28 100.0 32 ............................ TAAACGGTTCAACTGAGTGGACCCTCAAAACC 6493 28 100.0 32 ............................ TCCCAGCGTGGTTTAATCAGGCGCTCATAGAC 6433 28 100.0 32 ............................ ATTAGTTATGGGGGCTATAGCAGCTGCAGCGG 6373 28 100.0 32 ............................ AACCTGACTTATGCTCCGGATTTCGTTTTTTT 6313 28 100.0 32 ............................ TGTGGCCTCCTGTTTAGTTTGTACGTTCCCAT 6253 28 100.0 33 ............................ CGTCCGGTTATGAGCGCCCCCCCTGTGGCCACC 6192 28 100.0 32 ............................ GGGGCAAATAGATAACGCGCAAAAGACGCCAG 6132 28 100.0 32 ............................ CCAAACGGGGCTTAAGCTGGATAAAACGCGGA 6072 28 100.0 32 ............................ GGTGACACCAATCCCACAGCGATTGTGTTACC 6012 28 100.0 32 ............................ GCTTTCTTCGCAGCTCTGTGGTCGGCGCTAAA 5952 28 100.0 33 ............................ GCTGAAGAATACGCCTACCTGCGCCACCACCGC 5891 28 100.0 32 ............................ CAATAGCTAACTCAGAGAATTAGCTATCAGCT 5831 28 100.0 32 ............................ AAAAGAAGGCCGACTATGCGGCATGATTCAAA 5771 28 100.0 32 ............................ CGTCTGAAGCCTGGACGATTATTCAAGGTAAA 5711 28 100.0 32 ............................ GATGACTGAAGTGATACCGTAGCCCTGGCTTC 5651 28 100.0 32 ............................ ACGGAATGATGCAGGCTGTAATTTGAATAACC 5591 28 100.0 33 ............................ TTCTGCAGCGATTTCAGCAAGATTTTCATCAAT 5530 28 100.0 32 ............................ CATAATGTATGCCCCGTCAGGGGCAAAAACGT 5470 28 100.0 33 ............................ AGACAAGAGCTTGTCATAGTAGCGGGGCGGCAT 5409 28 100.0 32 ............................ TGATTACCCTCCAGAAAATGGTGTACTGATGC 5349 28 100.0 33 ............................ ACTCGTACTACAACCACGGGCGGTTGTATTGCT 5288 28 100.0 32 ............................ AGGTGACACCGAGCTTACAGCGATTGTGTTAC 5228 28 100.0 32 ............................ AGGTGACACCGAGCTTACAGCGATTGTGTTAC 5168 28 100.0 32 ............................ ATGTCGCCTGTATCAAACGTCAGGGCATCCGC 5108 28 100.0 33 ............................ ATCCATACAATTTGCCAGAGATGTATCGACGGG 5047 28 100.0 33 ............................ GAAGCTCCCGTTTCAGGACAACCCGATCGTCGG 4986 28 100.0 32 ............................ AGCATCTGTATTAAGCCAATCAGACATAACTT 4926 28 100.0 32 ............................ GCCACTGGGTGAATCCACTTTTTACGGGGGCT 4866 28 100.0 32 ............................ GCCAAGATATTCTGGGCGCTGGACACGAGAAT 4806 28 100.0 32 ............................ TTTAGGATTATGAAGATGACTAAAGAAGAGTT 4746 28 100.0 32 ............................ TCTGTGGCTTGCCGCCAAAAGAAGGCCGACTA 4686 28 96.4 0 ........T................... | ========== ====== ====== ====== ============================ ================================= ================== 44 28 99.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGGTTTGCATAAGCTGTTTGGCGGCGTGGGCTTTATCAGCGGTATGCTGGTGGAGAAAGGGCTGCCGGGGTTTATCGCCTACGGCGTATTGATTGGCGAAGTGGTGGCGCCGATCCTGATTATTGTCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTTACGATGATCGTGGCATGGCTGATGGTGGGATTGGATGAGACATTCGCGCTCGACAAGGTCGGCGCATGGGCGATTGAAAGCCTGGTGTACTTCTTTATCGGCTCGCTGGCGGTGGCGTTTTTAGGGGCAGGGCGGTTTGCGCTGGGGAAAACACCTGCGTGGCGGTAGGGGTTGGAATCTGTTCCGAGGGAAGGGGTCTACGGACCCTTTTTTATTGGTGAGTTTTAAGTTGTTGATTTCACAACGGTGAATTGTTGGTGGGGAAAAAAGGGTTTACGGAGAATTTTAGGGGGATTTCTTTATATCACAAGAAGATAGGTGTAGATTGTTCCA # Right flank : GCACTTCAGCCGGGTAAGCGTCGGTGGTTAGGGTCGAATGCCGAACAGGCAGTAGGCACAACGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACGAACGAGCGTTTATTGTTTATGCGAGGACCAGATCGCCCTGCGGATGGCACGAGCATGCCAGCACGTAACCCTCGGCAATTTCCGCGTCGGACAGCGTCATGGTGCTGGTGACGGTGTACTCCCCGGAAACCACCTTTGTTTTACAGCAGCCGCACACCCCGGCACGGCAGGCCGCCGCCACCGGCACGTTGTTGCTTTCCAGCGCCTCCAGCAGCGTCGTGCCCACGCGGCCAAAGAAGGTCTGCGCAGGCTGCAGTTTGGTGAACTGAATCCCGCTGGTTGCCGCTTCCGCCACCGGCGTGAAGAACTGCTCTTTGAAGAAACGGGTCACGCCGAGCGCTTTCACGTCTTCTTCCACGATAGCCATGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10671-12207 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFWZ01000010.1 Escherichia coli strain NGE-020 NODE_10_length_143028_cov_15.4657, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10671 28 100.0 33 ............................ GGTTACTCAGCCGGGTTATGTCGATATGTACAT 10732 28 100.0 32 ............................ AGCATCCGTATTAAGCCAATCAGACATAACTT 10792 28 100.0 32 ............................ CTAAAAAAGATGGTTTTGTATTTACTGAAAAA 10852 28 100.0 33 ............................ TGGCGATTCTGTTGATTATTTAATCCCGCAAAT 10913 28 100.0 32 ............................ GACAAGTTCAGCAGCCTCTGTGACGCGCCAGC 10973 28 100.0 33 ............................ TTGCCTCTGCTAATGCTGTTCGTGCTAATTATC 11034 28 100.0 33 ............................ ACTTGATGTAACTGTGCCAGGTGACACCGAGCT 11095 28 100.0 33 ............................ TGATACAGATGGACATTATTATATTAGCCCGAA 11156 28 100.0 33 ............................ AAAATGCAGAATGCGCACCGTTAGTGCGCATAA 11217 28 100.0 33 ............................ TTGTTCAAAGTCGGGAGCTTGTCAAACTTCTGT 11278 28 100.0 33 ............................ CGTGGAGACTCCAGGACCTCGACAAACACTCGA 11339 28 100.0 32 ............................ AATCCGGCTGGTCCAATTGGGAGCCAAATAGA 11399 28 100.0 32 ............................ GTTCTCGTGAGTGGGCAATCCGCTGTACACAC 11459 28 100.0 32 ............................ TATTTCACAAATAGAATATAACGCGAAATCGC 11519 28 100.0 32 ............................ ATAAGAAACGCCGGTTCGTCTTGCACAGCGAT 11579 28 100.0 32 ............................ CGCTTAAGGAAAAGGGTTATGTCACGATGATC 11639 28 100.0 32 ............................ TCAGGAAGGCCTATGAGCTTCAATGTCGATCC 11699 28 100.0 32 ............................ GTTAACACCTGTGGGAATTCCGAAATAATCGG 11759 28 100.0 32 ............................ TACGGGAAATCGGCTCTTTATGCTTTACAAGC 11819 28 100.0 32 ............................ ACGTCGCTGGCTGGCTCGTTTGCTGGGGCTTT 11879 28 100.0 32 ............................ AAAAATTCCCCCGCCCGCTTATGTCGGAATTT 11939 28 100.0 32 ............................ CGCTGCGGGTGGCTGCGACACGTTCTATGTCG 11999 28 100.0 32 ............................ GAACCGGGCGATAGTCCTGCTGCACTGTGTGA 12059 28 100.0 32 ............................ AGTCGACGCGCTCGGACGTTGCCAGGGTGAAC 12119 28 100.0 33 ............................ TGACGGGAAATCACGAGGACTTTCCACAGGCAT 12180 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCCCACAAACGCAGCCCGTATGTCGTTGCCTAGGGGCTTATCTGGAAGAGGTAAAATCCGGACTCACAGAATCTATGCGTGATTTTCAGGTGGTGGAATTTGAGGACGAAGCGGAAAAACCGCGACAAAAAGAGTGGTTGCTGGAAGATACAGAAACGAAATGCGACTACTGCCGGGCGTTAAACCATGTGCTGCTGGTGTCGCATTTTGACCGAGATATGTTGCCGCACCTGACGGGGTTGCTGCATGACATTACGCATTCAATGGCCGCGGATGTCGTTGCACCTCAAAGTGCAGAAACGGTAATTCATATTATTTCCTGAGTGCTATCTGAGGCGTCGGGGGTGTTCCTCTGACGCCATTGGTTTAAACCCTTTTTTCTGATGCTTACGTAACATATTGATTTATATGGTTATAATTTACGTCCCAGAAAAAGGGTTTTATGCGAAAAAGTTGATTATTTTGTTTGCTAACAATAGGATGGCGTTGTTTCCTTTCA # Right flank : AGCGCAGATTGCCGCCCGTCTCGGACGAACAGTGTTCACTGCCGCACGGGTAGCACAACTAAAAACAACTCTCTATAACATTCAGCTTACCTATTTAAAATTTAATACTATCAAACCCACATTCTTTATTTTTCGCAATGAATAAAAAATTCATTCACATACCAATTATATTCCAATGAATATATTGTTCGTAAAAATAATGCATTAAATGGAAAAGTGATTTTTCACTTTATTATCGCGGTAATTACTCTTCATTTGATACCCGTCACATTTGTTTTCATCTTATCTTCGATAACATACCGCGCATTCAACACATTGAAATAAAAGCCCTTGCTATGTCCGTAAACAGCATCACTCCAACAGACTTAAAAACCATCCTGCATTCAAAGCGCGCCAATATTTATTACCTGGAAAAATGTCGCATCCAGGTGAATGGCGGGCGTGTTGAATATGTCACCCAGGAAGGAAAAGAATCTTTTTACTGGAATATTCCCATCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 21764-22992 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFWZ01000010.1 Escherichia coli strain NGE-020 NODE_10_length_143028_cov_15.4657, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 21764 28 100.0 32 ............................ AGTCTACGCGCTCGGACGTTGCCAGCGTAAAC 21824 28 96.4 32 C........................... ACTCCCAGTGACGAAAAGTAGTCCTGGACGAT 21884 28 100.0 32 ............................ TCACCCTGAGCGCGCATTTCTTTCAGGATCTG 21944 28 100.0 32 ............................ ACAAGCTGGCGAACGATGGAACTCGCTTCGGT 22004 28 100.0 32 ............................ ACGCCGCTGGTGATTGATTACGAGCACCAGAC 22064 28 100.0 32 ............................ GTCTGCGTAACGCCAGGTTATTTTCTCGTACA 22124 28 100.0 32 ............................ AGAAAAATTCATACGGCGAAAAAGATAACAGC 22184 28 100.0 32 ............................ GGCGGCGAACTCATTACAGGGAACGGCGCAAT 22244 28 100.0 32 ............................ GATAGAGTTCCACCTTGGTCAAAAATTAATGA 22304 28 100.0 32 ............................ TGACGGGCGCTGCGTGCGTCGAGGCACTGGAA 22364 28 100.0 32 ............................ TGCCTGCGACATCGCGCGCAGCCCTTTAACAT 22424 28 100.0 32 ............................ CCATAGAGAAGGTGGCGGAGCTGGCTGGAGTG 22484 28 100.0 32 ............................ TGGGTTGCGTGGCGTGCTTTGTTCAGGCTGGC 22544 28 100.0 32 ............................ CGTGAAAGAGTGCAGATGTTCAAACTGTAATA 22604 28 100.0 32 ............................ TATTTTATTCGTCAGTTCTTCGGCCAGATCCC 22664 28 100.0 32 ............................ ACCCGGCAGGGACATCGACCGTGACGCTCTGG 22724 28 100.0 33 ............................ CCGAACGTGGCTGGCTGAGTACCAGGACCGAAC 22785 28 100.0 32 ............................ TTACCTCGGGGTGAAGTTTTAGTGGCTCCGCT 22845 28 100.0 32 ............................ GCTGGAATCAAAGTGATGGAGTGAGTATAAGG 22905 28 82.1 31 A...A......C...C......C..... ATAGAAAATAAGGCCTAACAGTCCTCGGACC C [22929] 22965 28 71.4 0 ....A...T..A....A....CCT...G | ========== ====== ====== ====== ============================ ================================= ================== 21 28 97.6 32 GTGCTCTGCCGTACAGGCAGCTTAGAAA # Left flank : AACGGGCCACGCGTTCGCTCTCGTCGGGCGTTAACGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTGATACCCGTGACACGCAAAATGTCCGCTTTCGACATGGACGTCCACTCGTGGATGTTGTCGAGCACACTGACGGGTAATCCCTGATTGAGAAATTCAATCAACCGCATACCTCGGTTGGCGGGTAAACCGGCGTAACGCCAAAGTGCGTTATCAGCAGGTTTCTGTGCGGGGATCCATGTTCTCATGTCACCTCCTGAGTAATGTCATTTGTCATGGGTAAGTATAGCCATTTGTCAGGGGGGGTGGAATGGGTGTTTTTGTTTGGGGGATTAATGCGAAGAAAGGTGTTTTGACCCTAATTTTTAGCGTTTGTGTAATAGATTGATTTTAAATGATTATTTTTGGTGGATGAAAAAGAGGGGGAGAGAAGGATTTTTAGCTTTTTTTGTATGCAAATCATAAAGGTGTGGAGATATTATTTCA # Right flank : GCTGGAACGAACGGCTAAATAATTGTTCAAATAATCAACTGCGACACAAAAAAATAAGGCCGGGATTAACCCGACCTTTTAAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGTAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTGAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACGGAAAGCGCATTCGTAAAGGGGATACAACA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //