Array 1 196797-197738 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWWQ01000013.1 Cronobacter sakazakii strain CE16 scaffold6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 196797 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAATA 196858 29 100.0 32 ............................. CGGAGATCCGGAAGTGTCCTGGCTGCTATATG 196919 29 100.0 32 ............................. CTCTTGCGCCCATTTCAGATCTCCTGCCAGTA 196980 29 100.0 31 ............................. GCCAGTATCGGAAATAACAACGATTTTGTCG 197040 29 89.7 32 T.CG......................... GTCCAGTAACCGCCAGTAATTTTGCTGACGGC 197101 29 96.6 32 .T........................... GTTTCTGCCTCTGAAGCCCAGCCGAGGGGATT 197162 29 96.6 32 .T........................... CCGCCACCCGATAGCGATAATTGCATCATGGT 197223 29 100.0 32 ............................. AATTATTAGACCAGGCGAAACTTGAAGAGGTC 197284 29 96.6 32 .T........................... GCGGGGATAGCGTTTGGCCTGTTGGTAGTAGT 197345 29 100.0 32 ............................. CTGTTGCTCCTCGTTCTGCAGGAAATTGGATC 197406 29 96.6 32 .T........................... CCTCTAATACACAGGAGTTGCCACCCGGCGAG 197467 29 96.6 32 .T........................... AGTGTCTACATTTAATGATGTCAGTTTGTGTT 197528 29 100.0 32 ............................. TCTTCCGGCGCGTCGGCCAGCTCCACCTGCTC 197589 29 96.6 32 ...........A................. ATAACGGCCAACTTTACATTTAAAAATGATGG 197650 29 100.0 32 ............................. AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 197711 28 79.3 0 G........-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================ ================== 16 29 96.8 32 CCGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGTTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGTGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAGGGCGAAAAAATGCCAATCAGTACAAAGGGTTACCGTTAGT # Right flank : GCTCAGGCTCTTAGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACAATCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 223975-224858 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWWQ01000013.1 Cronobacter sakazakii strain CE16 scaffold6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 223975 29 100.0 32 ............................. GAAATAATCACCGCGCGCGGCAGCGGGTTTGT 224036 29 100.0 32 ............................. ATATCGGTAGGCCCACGCAAGACCACTTTTTA 224097 29 100.0 32 ............................. GCGTTTGTCGATGCACTGTGTGACTTCAAGAA 224158 29 100.0 33 ............................. GCAGTGCGAGAAGTTGGCTGCGGAGAATGCGGC 224220 29 100.0 32 ............................. TCCGAAACCTACGGGCAGCCCGTGATGTATAA 224281 29 100.0 32 ............................. TAATCGAATTCGGCCTGCTTAACGATTTTCAC 224342 29 100.0 32 ............................. GCCCTTCTCGGTAATCCCCAGGGCGGATCATA 224403 29 100.0 32 ............................. ATAGTTGAGCGCCTGTCTCATCAATCGGACTA 224464 29 100.0 32 ............................. ACGAACCCAGCACGGCAAAACTGGCGGCAAAA 224525 29 100.0 32 ............................. CTCAGCTTATTACTCATAGGAGTTTTTCTGAT 224586 29 100.0 32 ............................. GGCTTGCTGATATCAACGCCCGCGAGCTGCAT 224647 29 100.0 32 ............................. CGTGGCGAGTCTTACCGTGTTCTTGATACCGG 224708 29 100.0 32 ............................. CACCGCGGCATGAGCAACTGCATTACGCTCAT 224769 29 100.0 32 ............................. ATTGCGGGATGACCAGTTCGCGAGCTTTCTGA 224830 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 100.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTGGCCGCCGGTGAAATCGAACCACCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCACTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAACCGTTGGTGAGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GTTGTTGAGTAGAATCGCCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCGGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //