Array 1 17044-18013 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK366050.1 Acidovorax oryzae ATCC 19882 T336DRAFT_scaffold00014.14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 17044 32 100.0 36 ................................ TTGAGCGCGGCCAGCGTGCCCGGGGCCACCAGGAGC 17112 32 100.0 36 ................................ TCCGCGCTCGGTGACTTCCGAGCCGTGCGCCTGGTG 17180 32 100.0 34 ................................ TGCCCGCCATCGATCCACTTGGAATAGGTGCGAA 17246 32 100.0 35 ................................ GTCCACAATGAACAATGGCCCCTGGCCGGTTACAG 17313 32 100.0 35 ................................ CATTCTGGCGGAGAGGGTGTCATCCATGGATCTAG 17380 32 100.0 34 ................................ TGCATGATGTAGTAGCAGTCCCAGCCGTGCTTAC 17446 32 100.0 36 ................................ CTGAGCGGTTGCGGGGTCCGCCGCGTGGGCAGCGGC 17514 32 100.0 36 ................................ GCTGGCAGCCCGCCCCATGCAGCCTGCAGCGCCTGC 17582 32 100.0 37 ................................ GTGAAGTACCTGCCTGCTGACGATGCCGCCGCATGCC 17651 32 100.0 35 ................................ CATGTCACAGCTCCTTTTCAAGGGTCATCGTCTTG 17718 32 100.0 34 ................................ CTGCATCACGACTCCACCCCCTGCATACGCTCAA 17784 32 100.0 35 ................................ ACAGCGGTGGAAGGTTGGCGGTGTTTTCTCATCGC 17851 32 100.0 33 ................................ ATCCCTGACGCTGATTTTTCGCCCAGCGTGCAG 17916 32 100.0 34 ................................ TTCACGACACGCTTGCCCAGGTCCGGCGCCTTGA 17982 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 15 32 100.0 35 GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC # Left flank : ACCGCCAACGTGGTGCTGAACGTGGCCTTCGGCCAGCCCACCATGGCGGTGGACACGCACATCTTCCGCGTGAGCAACCGCACCGGCCTGGCCCCCGGCAAGAACCCGCTGGCCGTGGAAATGCAGCTGCTGAAGCGCGTGCCCGCCGAATATGCCGTGGATTCGCACCACTGGCTCATCCTGCTGGGCCGCTACGTCTGCCAGGCGAGAAAGCCGCGCTGCTGGGAATGCGTGGTGGCGCCGTGGTGCGATTACCAGCCGAAGACGGCGGCGCCCTGAGGGGGGCCCTGCTTCCGCTCTTTCCTTCCTTATTTTTGCCGGGCGTTGCGAACCGCGAGTGACCGGGCTGCGCGCCTGGGGTTCGCGCGGGTGCAAGTGGTTGAGGGGAAAGGGAGTTTTTCCTGGGTGGCGGACGGGCGCGCATGCTGCGGGTCGATGGGGAGCAGGTTCGCGGATGTGCAGGGTAAATGGCTGGGGTGGCGCGGGTTTATAAAGATGCC # Right flank : CCGGCGCCTGCGCGAAATCGTCCAGTCCTACCTGGAGTCGTGAATCGCCCCGGGCTTAGAGGAGGCTCCTTCGTTTGAGAATGGAGCTATGAGGAAGTCCCCGAAGTTTTCCCCGGAAGTTGTAGAGCGCTCGGTGCGCATGGTCTTGGAATCGCAGGGCCAGTACGAATCGCAATGGGCAGCCATCGAGTCCATTGCATCCAAGATCGGCTGCACGAGCGAGACGCTGCGGCGCTGGGTTCGCCAGGCAGAGACGGACCAGGGCCTGCGCCCGGGAGCGACCACAGCCGAGCAACAGCGCATCAAGGAACTGGAGCGCGAGGTCCGCGAACTGCGCCAGACCAACGAGATTCTGAAGCTGGCCAGCGCGTATTTCGCCAAGGCGGAACTCGACCGCCACCACAAGAAGTGATGGGCTTCATCGACGCGCAGCGCGAGCACTTCGGGGTCGAGTCGATCTGCAAAGCCTTGCAGGTTGCCCCGTCGGGCTATTGGCGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 19365-19530 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK366050.1 Acidovorax oryzae ATCC 19882 T336DRAFT_scaffold00014.14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 19365 32 84.4 35 AGTCG........................... CGTGTCGAATGCTGCGATCGGCCTGGTGCTCTTGA 19432 32 100.0 35 ................................ TCGGCCATAGTCGGCCTCCTGTGTTGTGTGCCCTG 19499 32 87.5 0 ............................NNNN | ========== ====== ====== ====== ================================ =================================== ================== 3 32 90.6 36 GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC # Left flank : TACGTGGCCTTCGTCGTGGACGTGTACGCGCGGTTCATCGTGGGTTGGCGGGTCAGCAGTTCCATGCGAACGGATTTCGTCCTCGACGCGCTGGAGCAGGCGCTGTACGCGCGCAAGCCCGAGCGCGATGGCGCCTTGATCCATCACTCGGACCGCGGCTCGCAATACGTCAGCATCCGCTACAGCGAGCGGCTGGCCGAAGCAGGCATCGAGCCCTCGGTAGGCAGCAAGGGCGACAGCTATGACAACGCCCTGGCCGAGACCATCAACGGCTTGTACAAGACCGAATTGATCCACCGCCGGGCGCCCTGGAAGAGCAAGGAAGCCGTTGAACTCGCCACGCTCGAATGGGTCTCGTGGTTCAACCATCACCGGTTGATGGAGCCCATCGGCTACATCCCGCCGGCCGAAGCTGAGGCGAACTACCATCGGCAACTCGCAGGTCAGGCCATGTCGGTCTGACTCACACCAACTGGCCTCCACGAAAGCCGGGGCGGTTC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGGGCACGTCGCGCCCTGCGCGGGCGCACGGGTTGAAACACGC # Questionable array : NO Score: 4.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.80,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //