Array 1 14143-15134 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCVU01000001.1 Ligilactobacillus ruminis DSM 20403 = NBRC 102161, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 14143 36 86.1 39 A.....C.T.TT........................ GGTATCATATACCATACCAACGCCGGAAGAAACAATCGA G,A,A [14145,14147,14150] 14221 36 100.0 39 .................................... CGGATCGTACATGATGAATAATGGAGGCGCAAGAAAATA 14296 36 100.0 36 .................................... AATTGTTGAGATCGATTTTGATATTACGGAGTTTTT 14368 36 100.0 37 .................................... GAAGAATTAGGTGGTATCGAGCCCGAAGACGGCAAAC 14441 36 100.0 38 .................................... ATTTGCATTGAAATTAGTTCTTTTTGTTTTGTTACTTA 14515 36 100.0 39 .................................... ACGGAGTACGAACATGAATACCAAACAAACAAGTATTCA 14590 36 100.0 39 .................................... GACTTATTGGCTATGAGGATATTTTAGTGGAGCTTAAAG 14665 36 100.0 37 .................................... TATATTGATTGTGATAAAATATTTAAAGGTCGCTCGC 14738 36 100.0 36 .................................... GAAAAAGCAATCATTATCAATGAACACAATAAGGGC 14810 36 100.0 37 .................................... GTTTAGCTACATTGTACCTAATTTTTGGGTATTGACA 14883 36 100.0 38 .................................... AAGACGATCAACCATAAAGAAATATTGAGCATAATCTC 14957 36 100.0 35 .................................... AATTTGTCGGAAACGTTGTATCGCAAGAAAAACGG 15028 36 100.0 35 .................................... ATAGACAAAAGGAATTAGATAATAGTAAGTTATTA 15099 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 14 36 99.0 37 GTTTTCGTCTCCTTCACTCGGAGATAGGTAATTATC # Left flank : GATCGGTCTTACCGCAAACGAGATAGATTTTCATATTATTTATATTTGAAAACATTTTGATCACGATACCAAAGATAGTTGTTCAAATTTTTGAGAATCTCTCTTAAAGCTCCATTGTAAATTCGAATTTCAACATCTTCCGTAATAATTTTCGCAGCCATTTCCCTAACTGGACGGTATGTTTCTTTAGGGCTTCGGTCAACAAGGTTGACTCCCGCGACGTCATCCAATTTCATATTTAAACCTCCGATTATACTTGATGTTTAAAGCATGCCAAGATATCGGAGGTTTATGAGGAACGCTTATTTAAAGACCGCTTACGATGGGGCGAATATCAGTATCCTCTTTTTATATACGGAAAACGCACCTGTCGGATTCAAGTGCGTTTAGCATTGACGAACATATTGACTGCGTCTCATCTTTTCATCTTGGTTGTAGCACGAAAAACTCTGCTATACAAAAGCTTGCTTTAAATAACAGAATTATCCCGTATTTTTTAC # Right flank : CCGACGCATCCAAAAACACCATAACAACGGCATTTTCATCCTGTCCAAGCCGCCCGGAACCCGGGCGAGACGTACCTAAATGGAACAGCACCGCCCAATTTGACGGCAGTACATCGTACCAATGCATCGAACATCTATATTTTATCCTATTTTTTATGAATATGCAACCCAGTCTCGAATTTTCAGTCAGTTCGCCCCTTGCATGTTGCCTTGACAATAATCAAAAGAGGCTGGAAAAAACTCCTTCTTCACTCCTGAATTAAATGAAATGCCGAACAAAGGCGTCGTAATTCGACTGATTTTGTCCGGCATTCTTTCAATTTTAAGACATGAAAACCCGCTTTTCTATAAAATACAGAACTGCGAATCTCCTTCTCAATCAGGGCTCCAAGGAGGGATTACGGGCAAATTGCCGATTTCTTAAGATTTGATCGTAAATTCCAGTCTTCTACGAAGAATTATCCCGAATACACAAAGTCCCGGATGAAATTTGCAGTTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTTCACTCGGAGATAGGTAATTATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 31195-32967 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCVU01000001.1 Ligilactobacillus ruminis DSM 20403 = NBRC 102161, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 31195 33 100.0 34 ................................. TCATGCAACTTTTTTCTTTTACAAAATTATTACT 31262 33 100.0 33 ................................. TTTGAGTATCATGTAACGTGAGATGTTTTTCGT 31328 33 100.0 35 ................................. CAATATTGTTGAGCAATCTCTTGCTCTCATCATAT 31396 33 100.0 35 ................................. AAGAAGATATTGACCGTGGCTATGTTGACAAGCGA 31464 33 100.0 33 ................................. GTCATTAATGGTGTTATGGGTAACAAAGAATAT 31530 33 100.0 33 ................................. TGTCCGACTGTAATTAGAGGAGCTTATTAAAAC 31596 33 100.0 35 ................................. CCGGAATATCCTTTTGAGTGTCGTCAATGATCAAC 31664 33 100.0 36 ................................. CCTGCACTTCCTTGATGCCCACGTTTTCCAAGGGCT 31733 33 100.0 36 ................................. ATTGGCAGGTCAAAAGTTCAAAGTGTATACAGTAAT 31802 33 100.0 34 ................................. ACTTAATGTTGATCTGACAACACTTGGAGTTGAT 31869 33 100.0 34 ................................. AGATAGTGAGTGCGAGTGTAAGTATTTTCTAAAC 31936 33 100.0 33 ................................. GTTACCTGAATGACTTGCAACAGTCTGACCGTT 32002 33 100.0 33 ................................. GTGATGTCAACTCATTTTCATAACTTGTTTTAA 32068 33 100.0 34 ................................. ACAAACAACACTTACTAAAGTTAGAAACAATGCC 32135 33 100.0 36 ................................. CCTCAAGGTGACGTTGGTCCAGCTGGTGAAAAAGGG 32204 33 100.0 33 ................................. TGATTAAGTTCATCAATTGTCGGCTTGGAAATT 32270 33 100.0 35 ................................. TAACCATTAAAATAGAAAAAGTTGCGGTTAGGATT 32338 33 100.0 32 ................................. ACTGGCGAAGTCAGAACGATTTGTACCATATT 32403 33 100.0 33 ................................. GCTTGTGACGTTATATAATAAAAGAGTAGTAAA 32469 33 100.0 35 ................................. AATTACAATATGTAACCGACAGCACTCACTTTAGT 32537 33 100.0 33 ................................. TATGACGTCAATTAATGATGTCATGCAAGTTGC 32603 33 100.0 33 ................................. AAGCGCATCATTCTGATAACTTGCAACATCTAC 32669 33 100.0 33 ................................. GGAATTGCAATTGCACCACGTGTTCCCAATGCT 32735 33 100.0 34 ................................. GTGTGCCTAACGCAGAAAAACTCGCAATCTGTCT 32802 33 100.0 33 ................................. GCATTGCTTGTTGCATGAGCTTTATTGTTGCTT 32868 33 100.0 34 ................................. TCTCACGGTTGACAATGAGGACAAGGATTAGAAT 32935 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 27 33 100.0 34 ATTTCAACTCACGCCCCCTATACAGAGGGCGAC # Left flank : CCCTTTCAAGCGACAAGACGACGCTTGAATCCTACGGGTTCGTCAGTCGGGAAGGATTTGAGGGGGCGTTTGGGGGATGAGGATAATGGTAGAACATAAGAAAGAGAGGTCTGGAAAGTTCCGTTCTATTTTCAAACTAAATTAATGCCGGACAAAGTCGGTCAACTTGCGGATGATTTGTTCGGTATTCTATTGATATGACTTAATTTTTATGCTTCATACATTCTGTGACGGACACATTCAGATAACATTTACAGATTTAGTATCATCAATTTGATTTTAATCGTAAGCGGAAATAAGCGTTTAAGCCTCTGATATCTTGATATGATTTAAACATCAAGTATATCTGAGGTTTATAAAAACACTTACGTTGGTTCATATATAAGTAAAAACCGGATGATGTTCACAAACTAATTTCGAATCATCCGGTTTTTTTGCTGAAAATACATTTTTTTCCAACCTTGCTACTATTCATAACATCATTGATATGACATTCAGCT # Right flank : CAGCAAAAAACAGGCAATATAGCCCAATTTTTCGCATCATAATAAATAACTATAATCCTTACAACCGAAGATTAAGAAATATATTATGAATATTATTCGGCAATCATTAAAAACAAGGTGCGAATACTTCGAAAAAATATGTTCACTTTTGATTCGCAAATATTTTGTTATAAAATAAGCGTACCTTTGATATCAAAACTTTCTTTAATTCCAATGTGTTCTATCTTGTTTTTGTACTTATCACCCAAATTATAGAAACGCAAACTATCTTCATCTTTATTTATAATACCTTCTAAAGTAGCCTTAACTTGTCGATATTCTGTAGAATTTAATTGACATTCAAAAACAGAATTTTGAACCCTTTGACCGTAATTAACGCACTCTTTTGCTACCTTTCTTAGTCGTTTTCTACCAGCCGATGTTTCAGTACTAACATCATATGCTATTAAAATAAGCATAACTAACTTCACCTACTTCCAGAAAAAAGGTGGATACTCATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAACTCACGCCCCCTATACAGAGGGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //