Array 1 8462-6745 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESPH010000013.1 Capnocytophaga genosp. AHN8471 strain AHN 9798 AHN9798_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 8461 46 97.8 30 ................................T............. GGGCTAAAAGTTTGTCCCAGTATTTCGTTA 8385 46 100.0 30 .............................................. GCTCCTACTGTATGGGAATGAGAGAAGAAT 8309 46 97.8 29 ................................T............. TGGCAGAAAAAGCCATTAACAAGGAAGCT 8234 46 100.0 30 .............................................. GAAAGTGCTTGAAATGAGAAAATACAACCT 8158 46 100.0 31 .............................................. TATACCCCAAAACCACACCGCAAAGATAATA 8081 46 100.0 30 .............................................. TGAAATTTCTAATAAAAGAAATACAATCAT 8005 46 100.0 30 .............................................. GAAAAACACGGACGTAGAAAACGAAGAGCT 7929 46 100.0 30 .............................................. TAAGGGGGCTTTTGCTTTTTTTGCTTTTTT 7853 46 100.0 30 .............................................. GCTTTGTATATCTCTTGAAAAGAAAGTCCT 7777 46 100.0 30 .............................................. ATGGAAATGCAGGTACGGGTATCAATGTAC 7701 46 100.0 30 .............................................. AAAGTGATGTAACAAATCAACAAAGCAACT 7625 46 100.0 30 .............................................. ATGGTTAAAGCTTATGCAATCCATTTAGAA 7549 46 100.0 30 .............................................. GGGAGTTTGATTATGATAGTTATTCAAATT 7473 46 100.0 30 .............................................. GAGACACCTCATTATTATATTTGAAAAGTT 7397 46 100.0 29 .............................................. ATGGTTCGTAGTTTCATTCTTGAAGAGAT 7322 46 100.0 30 .............................................. AAGCTATAAAGGCACGAGTCCAGGACGGAT 7246 46 100.0 30 .............................................. TCTTTTTTTTGCCATAAAAAACCATCAAAC 7170 46 100.0 30 .............................................. CTGCTAAGAAAGAGGAAGCTATCCGCTTGT 7094 46 100.0 30 .............................................. CAACATCGTGCGCTTTTCGGTTCACCTCGA 7018 46 100.0 30 .............................................. ATTAAGAAAAAAAATATGCAAATCAAACCT 6942 46 100.0 30 .............................................. CTATTCGCTGTACACTGCTATTAAATTCCT 6866 46 100.0 30 .............................................. AAAGACGTGTTTACTAACATTCATCATTCA 6790 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 23 46 99.8 30 GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC # Left flank : AACAGTCGATATGTTGATGGACGGTTACAAGAAGTACGGCGTTGGATGGCTACAACAAACAATGGACGGGCTCTTGGCGGCGAGAGATTCAAGACAGTTTATGAATTCTTTAACCGAAGAACAAGCGAAAGAGTACGCGCACAAGCAGAGGGAAAGGCTGATGAATACATAATTGATTGTCAGCGAGAGGAACAGCGGAGTGTCATTGAATTTGCTAAACAAAACAACTTGTGGTATAGTCATTCAGATGTTGAACGATTAATTGATGGGTGTGAATGTGTAGGTTTAGGTCAAGAGTCAGTCGTTCATCTTTTACGAGATAAAACGACTGTATTGAAGCAAATGACTGGTCGTAATTTTGACCACTTAAATTATCCAATGGAAGCAGTTGTGCGTAATATAGCTATGTATAACGAATTGTTTCCAAACTCATATCTTCATTTAGAAGGTATATCAACAATCGATAGAAGAGAAGGTGAACAAGTATGTTTGTTGGTGAC # Right flank : CTCAATCTTTTAAAAGTTTTAGTATCAATCGGTTTTGCTTAAAAACAGTACTGAAAAACCTCCTCTTTTACCTTATAAACAAAGGCTAAAGAGGAGGTTTTACTTTTCTATTCTTCTTAAAAAAGCTCTAATTGCACATAGGTTTCGGGAGCTGCTGTTTCTCTCTGACAATAAAAAAACTCCATATCGCCAAACTGCTTATCAGTTAGGCACATAATAGCTATATTGCCATACTGAGGTAAGTTTTGTTTTACACGATTGATATGCACTTGGGCATTCTCCCTACTGGGGCAATGCCTTATGTACATCGAAAATTGAAAGAGCGTAAAGCCGTCCTTTATAAGTTTATCACGAAAGTTCTGTGCTTCTTTACGCATCTTCTTCGTTTCTGTTGGCAAATCGTATAATACTAATACCCACATAATTCTATAAGCATTATATCGTTCGGCTATGATCATAATTCAGGATAAGCTATCAGTCGCTTTTCACCCGTATAGCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.57%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 9275-9077 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAESPH010000013.1 Capnocytophaga genosp. AHN8471 strain AHN 9798 AHN9798_contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 9274 46 100.0 30 .............................................. GTTTTTAATTTTGTTGCTAACTTAAGAAAT 9198 46 97.8 30 ................................T............. CAATAAAAATTTTTCTGTGGCAGTGGTAAA 9122 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 3 46 99.3 30 GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC # Left flank : ATAGCCTATGGAGATCATTTGGTAACCCTACCCTTGTACTTAACAGGGATGGTGATTATCAGTTATCTTTTTGTGAGAGAGAGACCCCAAGAATGCCTACAAAGTGCCTTACGCATTGTTCTTCCGTTTACGGGGTTAATGCTTATTGCAGGGAGTCTGCCTGATGCGCATACGAGCTTGGCACTCGGTTATATTGCTGGCACTGCGGTGGCTTTCCTATTGGGAATGTGCATTGCTACTGTGAGCAAAACGTACCAAAAGATAGGTTTATCCGCGTTGGCTTTTCTGCTGGTAGTTGCCGTACGGTTGTCGTTTTCAGCGGAGTTTCAATATTTGATAGGCGTACATTGGTATACCTTAGGAAGTTAATCATCTAATAGAATATAGAAAGAGGTTGCTCAGAAGTCTGGGCAACCTTTTTTATGCTTTGTTACTTATAAAATATTTTTTTTGTATCTTTGCGATTTATTGTTGAACTATTTGATAAATTAAACATTTAT # Right flank : TATAATTAAAAGTCGTAGTCATAAGTATATTAAAAAGATAACATATAAAAATGGAAAAACAAGATACATCTACGAGCAAAAAGTTGCAAATCAAGCCACACAACAACAATCTACTAACAGTCGATATGTTGATGGACGGTTACAAGAAGTACGGCGTTGGATGGCTACAACAAACAATGGACGGGCTCTTGGCGGCGAGAGATTCAAGACAGTTTATGAATTCTTTAACCGAAGAACAAGCGAAAGAGTACGCGCACAAGCAGAGGGAAAGGCTGATGAATACATAATTGATTGTCAGCGAGAGGAACAGCGGAGTGTCATTGAATTTGCTAAACAAAACAACTTGTGGTATAGTCATTCAGATGTTGAACGATTAATTGATGGGTGTGAATGTGTAGGTTTAGGTCAAGAGTCAGTCGTTCATCTTTTACGAGATAAAACGACTGTATTGAAGCAAATGACTGGTCGTAATTTTGACCACTTAAATTATCCAATGGAAG # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.57%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAATTTTGTAGTTTTGCGATTGATAACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //